RchiOBHm_Chr3g0464051

Protein SSUH2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016198
Physical Location & Seq
Forward (+)
11296156 .. 11299729
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1284 bp
ATGGAGCAGTCTCTGCTTTCGGAAGAGCAACGAAATGGATCAGAGGAGAAGTCGAGTGAGAACTGGAGCTCGTACCAGTACGTGGGGAGATCCGGCTCTGTGATCCCGACGGCTTCGTTGGCCGGAACTGAAGTCAGCGTCGAAGAGATACGATCAGCGGCGGCTTATTCTGAGCACTACCCACCTTCTCTTCATAGCGGTTTGGTTAGTTCGCCGGAGCCTGATCTTGATGAGCAATCTGTTGTTTACCAAGGTGGATATGGAGGAGGTGCTGGCAGCACCACAAGTGAGTTTCATAGGCAAACACTGGATGAAGTAGAGATACGGGAGTTGCTCATTGATCATGTTGGCCATAGATGCTGTTGGGGAAGTCGTCCTGCTCGCACCTGGAAAATTCAGAGAGTGGAAGATTGCAACGTTTATGTGGGAACACTAGATACCTTCATTGAAGAAAGGGAAACTGTAAGAGAAACAGAGCCATACCTTGGTGGCAGTTTTGATGGAAGGGATAAGGGACCCGAACTGGGAGTCTGGGAATTGGATTTGAAGTCTCAATTTCCTGTTTTATTTATACCTCATAAAGAATCACGGGAGATAATTCCTCATTCAGAGTCCATTGCGAAATGCTCAGGTTGTGCAGGGCGAGGGGGTACCGTCTGTCCTAAATGCAATGCAAATGAAGAACCTGGATCCTACAAAGAGAACCAGATGACTCAGTGCTCTGCTTGTCATGGAAGGGGCTTACTTGCTCATAAAGATGGATCTGACTCAATATGTGTGACTTGCAATGGCAAGGGACAGATTCCTTGTGCAACATGTGGATCTCGTGGTCTAGTTAAATGTTTGACATGTGAAGGAAGTGGTTCTCTTCGGTCCCGCAATGTTGCCCTTGTTAGATGGAAGACACTTTCAACTAGAAAGGTAAGTGCAACAAGCGGAGCAGCATCTGTTCCCGATGATGTTTTCCACAGAGCCAAAGGGGTCCAGTTGTGCAACTCCCAGGCACATCAATGCACTCCAGCCTTCTTTGCCGACTCTTATTTCCTCAACAAGTTCTCATCGGAAGTCATCGCAGACAGAGCTCCTGTGCCTGTCTCTGCAAGGGTCATAAGCGAAAGGCACACCATATCCGTAGTTCCAGTGACACGCGTCACAATGGCTCATCGCAACCGATTATTCAGTTTCTACATCATTGGGTTTAGCAGGGAGGTGTATCTAAAGGACTACTATCCCTCTCGGTTTTGCTGGGGCTTGTGCCCGTGCTTGGAGTGGTTGAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

427

Amino Acids

47.03

Weight (kDa)

6.25

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38000
fragaria_vesca FvH4_6g12250
malus_domestica MD12G1158600.v1.1
prunus_persica Prupe.6G269000_v2.0.a1
pyrus_communis pycom12g15060
rosa_chinensis RchiOBHm_Chr3g0464051
rosa_laevigata RLG00000024726
rosa_multiflora Rmu_sc0004616.1_g000002
rosa_roxburghii Rroxscaffold_6G00416030
rosa_rugosa Rorug03G0070300 Rorug03G0070400
rosa_samantha Rh3BG131500 Rh3CG133800 Rh3DG132800
rosa_wichuraiana Rw3G010750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 650
AccB7I CCANNNNNTGG 2 cut(s) 82, 485
AccII CGCG 1 cut(s) 1149
AciI CCGC 5 cut(s) 158, 161, 198, 877, 936
AclI AACGTT 1 cut(s) 417
AclWI GGATC 7 cut(s) 46, 84, 97, 684, 697, 769, 829
AcoI YGGCCR 2 cut(s) 120, 349
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 3 cut(s) 74, 80, 652
AfiI CCNNNNNNNGG 4 cut(s) 82, 485, 524, 1264
AflIII ACRYGT 3 cut(s) 815, 848, 1147
AgsI TTSAA 4 cut(s) 449, 547, 912, 1276
AjnI CCWGG 3 cut(s) 386, 685, 999
AluBI AGCT 2 cut(s) 69, 1082
AluI AGCT 2 cut(s) 69, 1082
Alw21I GWGCWC 4 cut(s) 71, 177, 722, 1084
Alw26I GTCTC 3 cut(s) 15, 555, 1099
AlwI GGATC 7 cut(s) 46, 84, 97, 684, 697, 769, 829
AlwNI CAGNNNCTG 2 cut(s) 13, 947
AoxI GGCC 2 cut(s) 120, 349
ApeKI GCWGC 2 cut(s) 276, 941
ApoI RAATTY 1 cut(s) 393
ArsI GACNNNNNNTTYG 2 cut(s) 513, 545
Asp700I GAANNNNTTC 1 cut(s) 862
Asp718I GGTACC 1 cut(s) 650
AspS9I GGNCC 3 cut(s) 515, 873, 982
AvaII GGWCC 3 cut(s) 515, 873, 982
BaeGI GKGCMC 1 cut(s) 1259
BaeI ACNNNNGTAYC 2 cut(s) 314, 347
BalI TGGCCA 1 cut(s) 351
BamHI GGATCC 1 cut(s) 689
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 2 cut(s) 71, 1084
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BauI CACGAG 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 908
Bbv12I GWGCWC 4 cut(s) 71, 177, 722, 1084
BbvI GCAGC 2 cut(s) 288, 953
BccI CCATC 3 cut(s) 494, 752, 891
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 3 cut(s) 388, 687, 1001
BclI TGATCA 1 cut(s) 340
BcoDI GTCTC 3 cut(s) 15, 555, 1099
BfaI CTAG 3 cut(s) 434, 833, 915
BisI GCNGC 4 cut(s) 159, 162, 277, 942
BlsI GCNGC 4 cut(s) 160, 163, 278, 943
Bme1390I CCNGG 3 cut(s) 388, 687, 1001
Bme18I GGWCC 3 cut(s) 515, 873, 982
BmgT120I GGNCC 3 cut(s) 515, 873, 982
BmiI GGNNCC 7 cut(s) 219, 516, 517, 652, 691, 875, 983
BmrFI CCNGG 3 cut(s) 388, 687, 1001
BmrI ACTGGG 1 cut(s) 533
BmsI GCATC 2 cut(s) 347, 953
BmuI ACTGGG 1 cut(s) 533
BoxI GACNNNNGTC 1 cut(s) 1148
BpiI GAAGAC 1 cut(s) 908
BpmI CTGGAG 2 cut(s) 85, 1002
Bpu10I CCTNAGC 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 250, 484, 999
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 485, 524, 1264
Bse1I ACTGG 6 cut(s) 68, 76, 312, 528, 985, 1139
Bse3DI GCAATG 4 cut(s) 615, 676, 793, 886
BseBI CCWGG 3 cut(s) 388, 687, 1001
BseDI CCNNGG 3 cut(s) 250, 484, 999
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 4 cut(s) 82, 485, 524, 1264
BseMI GCAATG 4 cut(s) 615, 676, 793, 886
BseMII CTCAG 3 cut(s) 162, 642, 728
BseNI ACTGG 6 cut(s) 68, 76, 312, 528, 985, 1139
BseRI GAGGAG 2 cut(s) 59, 279
BseSI GKGCMC 1 cut(s) 1259
BseXI GCAGC 2 cut(s) 288, 953
BseYI CCCAGC 1 cut(s) 1245
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 1149
BshFI GGCC 2 cut(s) 122, 351
BshNI GGYRCC 1 cut(s) 650
BsiHKAI GWGCWC 4 cut(s) 71, 177, 722, 1084
BsiSI CCGG 3 cut(s) 93, 123, 215
BslFI GGGAC 3 cut(s) 528, 810, 859
BslI CCNNNNNNNGG 4 cut(s) 82, 485, 524, 1264
BsmAI GTCTC 3 cut(s) 15, 555, 1099
BsmFI GGGAC 3 cut(s) 528, 810, 859
BsnI GGCC 2 cut(s) 122, 351
Bsp1286I GDGCHC 5 cut(s) 71, 177, 722, 1084, 1259
Bsp143I GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
BspACI CCGC 5 cut(s) 158, 161, 198, 877, 936
BspANI GGCC 2 cut(s) 122, 351
BspCNI CTCAG 3 cut(s) 163, 641, 727
BspFNI CGCG 1 cut(s) 1149
BspLI GGNNCC 7 cut(s) 219, 516, 517, 652, 691, 875, 983
BspPI GGATC 7 cut(s) 46, 84, 97, 684, 697, 769, 829
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 650
BsrDI GCAATG 4 cut(s) 615, 676, 793, 886
BsrI ACTGG 6 cut(s) 68, 76, 312, 528, 985, 1139
BssECI CCNNGG 3 cut(s) 250, 484, 999
BssMI GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 250, 484
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 3 cut(s) 388, 687, 1001
Bst4CI ACNGT 2 cut(s) 463, 655
Bst6I CTCTTC 4 cut(s) 18, 138, 195, 873
BstAPI GCANNNNNTGC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 274, 382
BstDEI CTNAG 3 cut(s) 171, 628, 714
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 1149
BstKTI GATC 9 cut(s) 41, 92, 105, 155, 226, 343, 692, 764, 824
BstMAI GTCTC 3 cut(s) 15, 555, 1099
BstMBI GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
BstMWI GCNNNNNNNGC 5 cut(s) 13, 119, 357, 1028, 1079
BstNI CCWGG 3 cut(s) 388, 687, 1001
BstNSI RCATGY 2 cut(s) 819, 852
BstPAI GACNNNNGTC 1 cut(s) 1148
BstSCI CCNGG 3 cut(s) 386, 685, 999
BstSLI GKGCMC 1 cut(s) 1259
BstUI CGCG 1 cut(s) 1149
BstV1I GCAGC 2 cut(s) 288, 953
BstV2I GAAGAC 1 cut(s) 908
BstX2I RGATCY 4 cut(s) 89, 689, 761, 821
BstYI RGATCY 4 cut(s) 89, 689, 761, 821
BsuRI GGCC 2 cut(s) 122, 351
BtgZI GCGATG 2 cut(s) 1054, 1148
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 3 cut(s) 305, 722, 1146
Cac8I GCNNGC 2 cut(s) 274, 382
CaiI CAGNNNCTG 2 cut(s) 13, 947
Cfr13I GGNCC 3 cut(s) 515, 873, 982
CseI GACGC 2 cut(s) 127, 1138
Csp6I GTAC 3 cut(s) 73, 79, 651
CviAII CATG 4 cut(s) 344, 731, 816, 849
CviQI GTAC 3 cut(s) 73, 79, 651
DdeI CTNAG 3 cut(s) 171, 628, 714
DpnI GATC 9 cut(s) 40, 91, 104, 154, 225, 342, 691, 763, 823
DpnII GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
EaeI YGGCCR 2 cut(s) 120, 349
Eam1104I CTCTTC 4 cut(s) 18, 138, 195, 873
EarI CTCTTC 4 cut(s) 18, 138, 195, 873
Ecl136II GAGCTC 2 cut(s) 69, 1082
Eco130I CCWWGG 2 cut(s) 250, 484
Eco24I GRGCYC 2 cut(s) 71, 1084
Eco47I GGWCC 3 cut(s) 515, 873, 982
Eco53kI GAGCTC 2 cut(s) 69, 1082
Eco57I CTGAAG 1 cut(s) 150
EcoICRI GAGCTC 2 cut(s) 69, 1082
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 3 cut(s) 386, 685, 999
EcoT14I CCWWGG 2 cut(s) 250, 484
EcoT38I GRGCYC 2 cut(s) 71, 1084
ErhI CCWWGG 2 cut(s) 250, 484
FaeI CATG 4 cut(s) 347, 734, 819, 852
FaqI GGGAC 3 cut(s) 528, 810, 859
FatI CATG 4 cut(s) 343, 730, 815, 848
FauI CCCGC 1 cut(s) 884
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 4 cut(s) 159, 162, 277, 942
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 2 cut(s) 71, 1084
Fsp4HI GCNGC 4 cut(s) 159, 162, 277, 942
FspBI CTAG 3 cut(s) 434, 833, 915
GluI GCNGC 4 cut(s) 159, 162, 277, 942
GsaI CCCAGC 1 cut(s) 1249
GsuI CTGGAG 2 cut(s) 85, 1002
HaeIII GGCC 2 cut(s) 122, 351
HapII CCGG 3 cut(s) 93, 123, 215
HgaI GACGC 2 cut(s) 127, 1138
Hin1II CATG 4 cut(s) 347, 734, 819, 852
HinfI GANTC 7 cut(s) 528, 584, 611, 712, 767, 802, 1034
HpaII CCGG 3 cut(s) 93, 123, 215
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 7 cut(s) 22, 43, 172, 399, 610, 766, 1063
Hpy188III TCNNGA 3 cut(s) 106, 227, 953
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 2 cut(s) 112, 143
HpyAV CCTTC 6 cut(s) 195, 451, 498, 729, 848, 1033
HpyCH4III ACNGT 2 cut(s) 463, 655
HpyCH4IV ACGT 2 cut(s) 81, 417
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 119, 357, 1028, 1079
HpyF3I CTNAG 3 cut(s) 171, 628, 714
HpySE526I ACGT 2 cut(s) 81, 417
Hsp92II CATG 4 cut(s) 347, 734, 819, 852
KflI GGGWCCC 1 cut(s) 515
KpnI GGTACC 1 cut(s) 654
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 5 cut(s) 4, 66, 217, 938, 1087
Lsp1109I GCAGC 2 cut(s) 288, 953
LweI GCATC 2 cut(s) 347, 953
MaeI CTAG 3 cut(s) 434, 833, 915
MaeII ACGT 2 cut(s) 81, 417
MaeIII GTNAC 3 cut(s) 778, 1141, 1150
MalI GATC 9 cut(s) 40, 91, 104, 154, 225, 342, 691, 763, 823
MboI GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
MboII GAAGA 8 cut(s) 35, 155, 182, 419, 461, 692, 860, 913
MflI RGATCY 4 cut(s) 89, 689, 761, 821
MhlI GDGCHC 5 cut(s) 71, 177, 722, 1084, 1259
MlsI TGGCCA 1 cut(s) 351
MluCI AATT 4 cut(s) 393, 536, 554, 597
MluI ACGCGT 1 cut(s) 1147
MluNI TGGCCA 1 cut(s) 351
MlyI GAGTC 5 cut(s) 537, 620, 706, 761, 1028
MnlI CCTC 9 cut(s) 37, 257, 260, 585, 612, 638, 1055, 1201, 1243
Mox20I TGGCCA 1 cut(s) 351
MroXI GAANNNNTTC 1 cut(s) 862
MscI TGGCCA 1 cut(s) 351
MseI TTAA 1 cut(s) 837
MslI CAYNNNNRTG 2 cut(s) 756, 1009
Msp20I TGGCCA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 3 cut(s) 93, 123, 215
MspR9I CCNGG 3 cut(s) 388, 687, 1001
MvaI CCWGG 3 cut(s) 388, 687, 1001
MvnI CGCG 1 cut(s) 1149
MwoI GCNNNNNNNGC 5 cut(s) 13, 119, 357, 1028, 1079
NdeII GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
NlaIII CATG 4 cut(s) 347, 734, 819, 852
NlaIV GGNNCC 7 cut(s) 219, 516, 517, 652, 691, 875, 983
NmuCI GTSAC 3 cut(s) 778, 1141, 1150
NspI RCATGY 2 cut(s) 819, 852
PciI ACATGT 2 cut(s) 815, 848
PciSI GCTCTTC 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 862
PfeI GAWTC 2 cut(s) 584, 802
PflMI CCANNNNNTGG 2 cut(s) 82, 485
PkrI GCNGC 4 cut(s) 160, 163, 278, 943
PleI GAGTC 5 cut(s) 536, 619, 706, 761, 1028
PpsI GAGTC 5 cut(s) 536, 619, 706, 761, 1028
Ppu21I YACGTR 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 515
PscI ACATGT 2 cut(s) 815, 848
PshAI GACNNNNGTC 1 cut(s) 1148
Psp124BI GAGCTC 2 cut(s) 71, 1084
Psp1406I AACGTT 1 cut(s) 417
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 3 cut(s) 386, 685, 999
PspFI CCCAGC 1 cut(s) 1245
PspGI CCWGG 3 cut(s) 386, 685, 999
PspN4I GGNNCC 7 cut(s) 219, 516, 517, 652, 691, 875, 983
PspPI GGNCC 3 cut(s) 515, 873, 982
PspPPI RGGWCCY 1 cut(s) 515
PsrI GAACNNNNNNTAC 2 cut(s) 421, 453
PstNI CAGNNNCTG 2 cut(s) 13, 947
PsuI RGATCY 4 cut(s) 89, 689, 761, 821
RsaI GTAC 3 cut(s) 74, 80, 652
RsaNI GTAC 3 cut(s) 73, 79, 651
RseI CAYNNNNRTG 2 cut(s) 756, 1009
SacI GAGCTC 2 cut(s) 71, 1084
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 1 cut(s) 837
SatI GCNGC 4 cut(s) 159, 162, 277, 942
Sau3AI GATC 9 cut(s) 38, 89, 102, 152, 223, 340, 689, 761, 821
Sau96I GGNCC 3 cut(s) 515, 873, 982
SchI GAGTC 5 cut(s) 537, 620, 706, 761, 1028
ScrFI CCNGG 3 cut(s) 388, 687, 1001
SduI GDGCHC 5 cut(s) 71, 177, 722, 1084, 1259
SfaNI GCATC 2 cut(s) 347, 953
SinI GGWCC 3 cut(s) 515, 873, 982
SmiMI CAYNNNNRTG 2 cut(s) 756, 1009
Sse9I AATT 4 cut(s) 393, 536, 554, 597
SsiI CCGC 5 cut(s) 158, 161, 198, 877, 936
SspMI CTAG 3 cut(s) 434, 833, 915
SstI GAGCTC 2 cut(s) 71, 1084
StyD4I CCNGG 3 cut(s) 386, 685, 999
StyI CCWWGG 2 cut(s) 250, 484
TaaI ACNGT 2 cut(s) 463, 655
TaiI ACGT 2 cut(s) 84, 420
TaqI TCGA 2 cut(s) 53, 141
TaqII GACCGA 1 cut(s) 861
TasI AATT 4 cut(s) 393, 536, 554, 597
TauI GCSGC 2 cut(s) 161, 164
TfiI GAWTC 2 cut(s) 584, 802
Tru1I TTAA 1 cut(s) 837
Tru9I TTAA 1 cut(s) 837
TscAI CASTG 3 cut(s) 312, 722, 1146
TseFI GTSAC 3 cut(s) 778, 1141, 1150
TseI GCWGC 2 cut(s) 276, 941
Tsp45I GTSAC 3 cut(s) 778, 1141, 1150
TspDTI ATGAA 5 cut(s) 182, 284, 327, 433, 693
TspGWI ACGGA 1 cut(s) 1120
TspRI CASTG 3 cut(s) 312, 722, 1146
Van91I CCANNNNNTGG 2 cut(s) 82, 485
VpaK11BI GGWCC 3 cut(s) 515, 873, 982
XapI RAATTY 1 cut(s) 393
XceI RCATGY 2 cut(s) 819, 852
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 862
XspI CTAG 3 cut(s) 434, 833, 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.