RchiOBHm_Chr3g0464511

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015068
Physical Location & Seq
Forward (+)
11627965 .. 11630192
2228 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGGTGAAGGATAGGAGGATTGGTGTGGCCATGGACTTCTCAAAGAGCAGCAAAAACGCTCTTCAATGGGCCGTAGACAACTTGGTCGACAAAGGTGACACCCTCTGCATCATCCACATCAACAGCAACAAAGTCGACGAGTCTCGCAACGTCCTCTGGGCCAAATCTGGTTCTCCTCTTATTCCATTGTCTGAGTTTAGAGAGCCTGAGGTTATGAAAAAGTATGGGGTACAAACTGATATGGAAGTTCTTGATACACTCGACACTGCTTCTAGGCAGAAAGAGGTGAGCATTATTACAAAGCTGTACTGGGGAGATGCAAGGGAGAAGCTTCTTGAAGCAGTTGAGGATCTGAAATTAGACTCTCTGGTGATGGGAAGCAGAGGACTTGGTACCCTTAAAAGGGTTATACTTGGAAGTGTGAGCGACTATGTGATGACGAATGCTTCAATCCCTGTGACCATTGTCAAGGACCTTGACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

161

Amino Acids

17.97

Weight (kDa)

5.73

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 5 - 157 4.2e-30 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53990 AT3G53990
fragaria_vesca FvH4_6g12670
malus_domestica MD04G1139800.v1.1 MD12G1155300.v1.1
prunus_persica Prupe.6G265200_v2.0.a1
pyrus_communis pycom04g12770
rosa_chinensis RchiOBHm_Chr3g0464511
rosa_laevigata RLG00000024689
rosa_roxburghii Rroxscaffold_6G00415600
rosa_rugosa Rorug03G0008900 Rorug03G0072800
rosa_samantha Rh3BG135100 Rh3CG137700 Rh3DG136400
rosa_wichuraiana Rw3G011040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 83
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 1 cut(s) 392
AccI GTMKAC 3 cut(s) 75, 87, 135
AclWI GGATC 1 cut(s) 357
AcoI YGGCCR 1 cut(s) 27
AfaI GTAC 3 cut(s) 231, 308, 394
AfiI CCNNNNNNNGG 2 cut(s) 402, 403
AgsI TTSAA 3 cut(s) 65, 338, 450
AluBI AGCT 2 cut(s) 304, 331
AluI AGCT 2 cut(s) 304, 331
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 357
AoxI GGCC 3 cut(s) 27, 69, 159
ApeKI GCWGC 1 cut(s) 48
Asp718I GGTACC 1 cut(s) 392
AspS9I GGNCC 3 cut(s) 69, 159, 472
AsuHPI GGTGA 4 cut(s) 16, 107, 298, 382
AvaII GGWCC 1 cut(s) 472
AxyI CCTNAGG 1 cut(s) 207
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 472
BmgT120I GGNCC 3 cut(s) 69, 159, 472
BmiI GGNNCC 1 cut(s) 394
BmrI ACTGGG 1 cut(s) 319
BmsI GCATC 2 cut(s) 117, 307
BmuI ACTGGG 1 cut(s) 319
BoxI GACNNNNGTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 30
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 402, 403
Bse1I ACTGG 1 cut(s) 314
Bse21I CCTNAGG 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 402, 403
BseMII CTCAG 2 cut(s) 183, 198
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 60
BshFI GGCC 3 cut(s) 29, 71, 161
BshNI GGYRCC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 402, 403
BsmAI GTCTC 1 cut(s) 147
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 3 cut(s) 29, 71, 161
Bsp143I GATC 1 cut(s) 349
Bsp19I CCATGG 1 cut(s) 30
BspANI GGCC 3 cut(s) 29, 71, 161
BspCNI CTCAG 2 cut(s) 184, 199
BspLI GGNNCC 1 cut(s) 394
BspPI GGATC 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 192, 207
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 349
BstPAI GACNNNNGTC 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu36I CCTNAGG 1 cut(s) 207
BsuRI GGCC 3 cut(s) 29, 71, 161
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 264
Cfr13I GGNCC 3 cut(s) 69, 159, 472
Csp6I GTAC 3 cut(s) 230, 307, 393
CviAII CATG 1 cut(s) 31
CviJI RGCY 6 cut(s) 29, 71, 161, 205, 304, 331
CviKI_1 RGCY 6 cut(s) 29, 71, 161, 205, 304, 331
CviQI GTAC 3 cut(s) 230, 307, 393
DdeI CTNAG 2 cut(s) 192, 207
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 472
Eco81I CCTNAGG 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 34
FaiI YATR 6 cut(s) 32, 215, 225, 242, 410, 432
FatI CATG 1 cut(s) 30
FblI GTMKAC 3 cut(s) 75, 87, 135
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 1 cut(s) 273
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 3 cut(s) 29, 71, 161
Hin1II CATG 1 cut(s) 34
HincII GTYRAC 2 cut(s) 88, 136
HindII GTYRAC 2 cut(s) 88, 136
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 2 cut(s) 140, 362
HphI GGTGA 4 cut(s) 16, 107, 298, 382
Hpy166II GTNNAC 3 cut(s) 76, 88, 136
Hpy188I TCNGA 2 cut(s) 193, 354
Hpy188III TCNNGA 2 cut(s) 251, 335
Hpy8I GTNNAC 3 cut(s) 76, 88, 136
Hpy99I CGWCG 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 108, 320
HpyF3I CTNAG 2 cut(s) 192, 207
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 34
KpnI GGTACC 1 cut(s) 396
Kzo9I GATC 1 cut(s) 349
LguI GCTCTTC 1 cut(s) 66
LpnPI CCDG 6 cut(s) 142, 153, 219, 295, 353, 468
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 2 cut(s) 117, 307
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 95, 457
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 1 cut(s) 53
MflI RGATCY 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 1 cut(s) 356
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 2 cut(s) 149, 356
MnlI CCTC 8 cut(s) 9, 113, 164, 186, 202, 277, 340, 377
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 448
NcoI CCATGG 1 cut(s) 30
NdeII GATC 1 cut(s) 349
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 2 cut(s) 95, 457
PciSI GCTCTTC 1 cut(s) 66
PctI GAATGC 1 cut(s) 448
PkrI GCNGC 1 cut(s) 50
PleI GAGTC 2 cut(s) 148, 356
PpsI GAGTC 2 cut(s) 148, 356
PpuMI RGGWCCY 1 cut(s) 472
PshAI GACNNNNGTC 1 cut(s) 464
Psp5II RGGWCCY 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 3 cut(s) 69, 159, 472
PspPPI RGGWCCY 1 cut(s) 472
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 3 cut(s) 231, 308, 394
RsaNI GTAC 3 cut(s) 230, 307, 393
SalI GTCGAC 2 cut(s) 86, 134
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 3 cut(s) 69, 159, 472
SchI GAGTC 2 cut(s) 149, 356
SetI ASST 7 cut(s) 97, 153, 213, 288, 306, 333, 477
SfaNI GCATC 2 cut(s) 117, 307
SinI GGWCC 1 cut(s) 472
Sse9I AATT 1 cut(s) 356
SspMI CTAG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 30
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 87, 135, 261
TasI AATT 1 cut(s) 356
TatI WGTACW 1 cut(s) 306
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 2 cut(s) 95, 457
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 2 cut(s) 95, 457
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 472
XmiI GTMKAC 3 cut(s) 75, 87, 135
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.