RchiOBHm_Chr3g0467911

membrane-associated kinase regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015652
Physical Location & Seq
Reverse (-)
14036499 .. 14050865
14367 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1230 bp
ATGGTGGTTGGTGTCCACTGGTTACTACTCCTTGAGTTGACTCGGTCAAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGATGAAGTTTCACATGAGAATGGCCAGAAACCAAGCTTCAAGTGATCATCAAACGTCAGATGAAGACTACATAGACATGGAAGTAAGTTCTTCTTCCTCAAACTTCTTCTGTTATTCCATTAGCTCTAGTCCACCACAAACCAGAGAGTTTGAGTTCCAAATGTCCTCAGTTCCTGACCATGACAAGCAGTCCACTACTTCTCCAGCTGATGAGCTCTTCTACAAAGGAACACTCCTCCCTCTTCATCTCCCACCTCGCTTGCAAATGGTCCAAAGTATCCTCCAAACCTCAAACAGTACCAAACTTGATACCAAAACCCAACAAGCTATTGAACAAAGCTTCAACCTTCCCTTCATCAAAAGCTCTAGAACTGCTCCCAACACTAACACAAGTACCCCATTGGATAGGTCCTGCAATATCTCACCCTCAGAGTCTTGCAGAGTAAGTAGTGAGCTAAACCCCGATGATTATGTCTCTGAATGGACAGAAGAAATGAGTGCTTTCATTGGTGATGATCCTTCAAAAAAATCTAATTGGTCAAAAAAGCTGAAGCAAATAAAGCAGTTCATTTTGAGTCAAAAGCTCAAGGCTTCAAGGGCATATGTTAAGTCCTTGTTCAGTAAGTCCACTTGTGCAGATCATGAGTACTCCTCAGCCAAGTCAGCAAGCAATGCAGAACCAGAAAATGGCTCAAAAGGTAACAAGGATTCCTTAAACAAGTACATGAAGATGGCAAAGAAGAATCCATTTGGGAAAATTGACAATGGGAGATATCAGATTTCAAGTACTACTCTCATGAAGAGCATTGAGAAAGAAATGGCTGAGGAAAATGCCAACACAAATCACAGAAAGTCATTCTCTGGGGCATTTCAACAACACTCAATGTGTTCCTCAACAACTTCATCTGTTTCTTCTTCTTCATCTTCTTCCTTTTCATTTAGTTCAAGTGGGTTCTCAGATTCACAGTTGCTCAAGAGGAGTATCAGTGCAAATTCTGAGATTGAGAGCTCCATTGAAGGAGCCATTGCTCACTGTAAACAGTCACAGCAGATTGTGGGTGTGAAGAGACAGTTTGTGGGGGTCAAGAGACACCAGGATTTGCCCAATGCCACATCCAAAGCCATGCGAGAGACACACATGATTGCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

409

Amino Acids

45.88

Weight (kDa)

9.02

Isoelectric Point (pI)

63.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015652)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14700
malus_domestica MD04G1117200.v1.1 MD12G1132800.v1.1
prunus_persica Prupe.6G246800_v2.0.a1
pyrus_communis pycom04g10690
rosa_chinensis RchiOBHm_Chr3g0467911
rosa_laevigata RLG00000024468
rosa_multiflora Rmu_sc0001793.1_g000046 Rmu_sc0001793.1_g000047
rosa_roxburghii Rroxscaffold_6G00413320
rosa_rugosa Rorug03G0090500
rosa_samantha Rh3AG138800 Rh3BG160400 Rh3CG160400 Rh3DG161000
rosa_wichuraiana Rw3G013150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 764
AclWI GGATC 1 cut(s) 587
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 1069
AcuI CTGAAG 1 cut(s) 647
AfaI GTAC 5 cut(s) 376, 472, 725, 800, 865
AfiI CCNNNNNNNGG 1 cut(s) 764
AgsI TTSAA 9 cut(s) 117, 410, 421, 600, 672, 861, 950, 1023, 1094
AhdI GACNNNNNGTC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 1170
Alw21I GWGCWC 2 cut(s) 294, 1088
Alw26I GTCTC 4 cut(s) 556, 1138, 1159, 1202
AlwI GGATC 1 cut(s) 587
AlwNI CAGNNNCTG 1 cut(s) 251
AoxI GGCC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 1069
AspS9I GGNCC 2 cut(s) 346, 486
AsuHPI GGTGA 2 cut(s) 492, 599
AvaII GGWCC 2 cut(s) 346, 486
BaeI ACNNNNGTAYC 2 cut(s) 454, 487
BalI TGGCCA 1 cut(s) 101
BanII GRGCYC 2 cut(s) 294, 1088
BbsI GAAGAC 1 cut(s) 147
Bbv12I GWGCWC 2 cut(s) 294, 1088
BbvCI CCTCAGC 2 cut(s) 730, 900
BccI CCATC 1 cut(s) 802
BciT130I CCWGG 1 cut(s) 1172
BciVI GTATCC 1 cut(s) 365
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 4 cut(s) 556, 1138, 1159, 1202
BfaI CTAG 2 cut(s) 204, 444
BfuI GTATCC 1 cut(s) 365
BmcAI AGTACT 2 cut(s) 725, 865
Bme1390I CCNGG 1 cut(s) 1172
Bme18I GGWCC 2 cut(s) 346, 486
BmeRI GACNNNNNGTC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 346, 486
BmiI GGNNCC 1 cut(s) 1099
BmrFI CCNGG 1 cut(s) 1172
BpiI GAAGAC 1 cut(s) 147
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 2 cut(s) 730, 900
BpuEI CTTGAG 3 cut(s) 53, 647, 1034
BsaXI ACNNNNNCTCC 4 cut(s) 262, 292, 1048, 1078
Bsc4I CCNNNNNNNGG 1 cut(s) 764
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 2 cut(s) 754, 1101
BseBI CCWGG 1 cut(s) 1172
BseGI GGATG 1 cut(s) 1190
BseLI CCNNNNNNNGG 1 cut(s) 764
BseMI GCAATG 2 cut(s) 754, 1101
BseMII CTCAG 6 cut(s) 258, 519, 744, 891, 1047, 1065
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 3 cut(s) 302, 718, 1069
BsgI GTGCAG 1 cut(s) 732
BshFI GGCC 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 294, 1088
BslI CCNNNNNNNGG 1 cut(s) 764
BsmAI GTCTC 4 cut(s) 556, 1138, 1159, 1202
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 2 cut(s) 294, 1088
Bsp143I GATC 3 cut(s) 121, 592, 715
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 6 cut(s) 257, 518, 743, 892, 1046, 1066
BspHI TCATGA 2 cut(s) 718, 873
BspLI GGNNCC 1 cut(s) 1099
BspPI GGATC 1 cut(s) 587
BspQI GCTCTTC 2 cut(s) 299, 872
BsrDI GCAATG 2 cut(s) 754, 1101
BsrI ACTGG 1 cut(s) 23
BssMI GATC 3 cut(s) 121, 592, 715
Bst2UI CCWGG 1 cut(s) 1172
Bst4CI ACNGT 5 cut(s) 374, 1044, 1112, 1119, 1149
Bst6I CTCTTC 5 cut(s) 47, 299, 324, 872, 1136
BstAPI GCANNNNNTGC 1 cut(s) 749
BstC8I GCNNGC 2 cut(s) 338, 745
BstDEI CTNAG 6 cut(s) 244, 505, 730, 900, 1033, 1074
BstF5I GGATG 1 cut(s) 1190
BstKTI GATC 3 cut(s) 124, 595, 718
BstMAI GTCTC 4 cut(s) 556, 1138, 1159, 1202
BstMBI GATC 3 cut(s) 121, 592, 715
BstMWI GCNNNNNNNGC 4 cut(s) 637, 674, 740, 749
BstNI CCWGG 1 cut(s) 1172
BstSCI CCNGG 1 cut(s) 1170
BstV2I GAAGAC 1 cut(s) 147
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 1190
BtsIMutI CAGTG 3 cut(s) 16, 1069, 1108
Cac8I GCNNGC 2 cut(s) 338, 745
CaiI CAGNNNCTG 1 cut(s) 251
CciI TCATGA 2 cut(s) 718, 873
Cfr13I GGNCC 2 cut(s) 346, 486
Csp6I GTAC 5 cut(s) 375, 471, 724, 799, 864
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 8 cut(s) 91, 154, 257, 719, 802, 874, 1201, 1216
CviQI GTAC 5 cut(s) 375, 471, 724, 799, 864
DdeI CTNAG 6 cut(s) 244, 505, 730, 900, 1033, 1074
DpnI GATC 3 cut(s) 123, 594, 717
DpnII GATC 3 cut(s) 121, 592, 715
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 5 cut(s) 47, 299, 324, 872, 1136
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 5 cut(s) 47, 299, 324, 872, 1136
Ecl136II GAGCTC 2 cut(s) 292, 1086
Eco24I GRGCYC 2 cut(s) 294, 1088
Eco32I GATATC 1 cut(s) 851
Eco47I GGWCC 2 cut(s) 346, 486
Eco53kI GAGCTC 2 cut(s) 292, 1086
Eco57I CTGAAG 1 cut(s) 647
EcoICRI GAGCTC 2 cut(s) 292, 1086
EcoO109I RGGNCCY 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 1170
EcoRV GATATC 1 cut(s) 851
EcoT38I GRGCYC 2 cut(s) 294, 1088
FaeI CATG 8 cut(s) 94, 157, 260, 722, 805, 877, 1204, 1219
FalI AAGNNNNNCTT 4 cut(s) 154, 186, 773, 805
FatI CATG 8 cut(s) 90, 153, 256, 718, 801, 873, 1200, 1215
FauNDI CATATG 1 cut(s) 679
FbaI TGATCA 1 cut(s) 121
FokI GGATG 1 cut(s) 1177
FriOI GRGCYC 2 cut(s) 294, 1088
FspBI CTAG 2 cut(s) 204, 444
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 8 cut(s) 94, 157, 260, 722, 805, 877, 1204, 1219
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 111, 415
HinfI GANTC 6 cut(s) 40, 509, 652, 785, 820, 1037
HphI GGTGA 2 cut(s) 492, 599
Hpy166II GTNNAC 6 cut(s) 16, 39, 209, 270, 705, 1115
Hpy188I TCNGA 6 cut(s) 136, 508, 556, 855, 1036, 1075
Hpy188III TCNNGA 6 cut(s) 251, 444, 719, 874, 1051, 1162
Hpy8I GTNNAC 6 cut(s) 16, 39, 209, 270, 705, 1115
HpyAV CCTTC 4 cut(s) 434, 439, 606, 1088
HpyCH4III ACNGT 5 cut(s) 374, 1044, 1112, 1119, 1149
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 7 cut(s) 340, 492, 516, 713, 752, 1067, 1223
HpyF10VI GCNNNNNNNGC 4 cut(s) 637, 674, 740, 749
HpyF3I CTNAG 6 cut(s) 244, 505, 730, 900, 1033, 1074
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 8 cut(s) 94, 157, 260, 722, 805, 877, 1204, 1219
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 592, 715
LguI GCTCTTC 2 cut(s) 299, 872
LmnI GCTCC 3 cut(s) 457, 1091, 1097
MaeI CTAG 2 cut(s) 204, 444
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 3 cut(s) 21, 776, 1119
MalI GATC 3 cut(s) 123, 594, 717
MboI GATC 3 cut(s) 121, 592, 715
MhlI GDGCHC 2 cut(s) 294, 1088
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 3 cut(s) 610, 834, 1069
MluNI TGGCCA 1 cut(s) 101
MlyI GAGTC 3 cut(s) 34, 518, 661
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 2 cut(s) 684, 791
MslI CAYNNNNRTG 3 cut(s) 95, 152, 806
Msp20I TGGCCA 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 1172
MvaI CCWGG 1 cut(s) 1172
MwoI GCNNNNNNNGC 4 cut(s) 637, 674, 740, 749
NdeI CATATG 1 cut(s) 679
NdeII GATC 3 cut(s) 121, 592, 715
NlaIII CATG 8 cut(s) 94, 157, 260, 722, 805, 877, 1204, 1219
NlaIV GGNNCC 1 cut(s) 1099
NmuCI GTSAC 1 cut(s) 1119
PagI TCATGA 2 cut(s) 718, 873
PciSI GCTCTTC 2 cut(s) 299, 872
PfeI GAWTC 3 cut(s) 785, 820, 1037
PflFI GACNNNGTC 1 cut(s) 43
PflMI CCANNNNNTGG 1 cut(s) 764
PleI GAGTC 3 cut(s) 34, 517, 660
PpsI GAGTC 3 cut(s) 34, 517, 660
PpuMI RGGWCCY 1 cut(s) 486
Psp124BI GAGCTC 2 cut(s) 294, 1088
Psp5II RGGWCCY 1 cut(s) 486
Psp6I CCWGG 1 cut(s) 1170
PspGI CCWGG 1 cut(s) 1170
PspN4I GGNNCC 1 cut(s) 1099
PspPI GGNCC 2 cut(s) 346, 486
PspPPI RGGWCCY 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 251
PsyI GACNNNGTC 1 cut(s) 43
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 5 cut(s) 376, 472, 725, 800, 865
RsaNI GTAC 5 cut(s) 375, 471, 724, 799, 864
RseI CAYNNNNRTG 3 cut(s) 95, 152, 806
SacI GAGCTC 2 cut(s) 294, 1088
SapI GCTCTTC 2 cut(s) 299, 872
SaqAI TTAA 2 cut(s) 684, 791
Sau3AI GATC 3 cut(s) 121, 592, 715
Sau96I GGNCC 2 cut(s) 346, 486
ScaI AGTACT 2 cut(s) 725, 865
SchI GAGTC 3 cut(s) 34, 518, 661
ScrFI CCNGG 1 cut(s) 1172
SduI GDGCHC 2 cut(s) 294, 1088
SinI GGWCC 2 cut(s) 346, 486
SmiMI CAYNNNNRTG 3 cut(s) 95, 152, 806
SmlI CTYRAG 3 cut(s) 32, 662, 1049
SmoI CTYRAG 3 cut(s) 32, 662, 1049
Sse9I AATT 3 cut(s) 610, 834, 1069
SspMI CTAG 2 cut(s) 204, 444
SstI GAGCTC 2 cut(s) 294, 1088
StyD4I CCNGG 1 cut(s) 1170
TaaI ACNGT 5 cut(s) 374, 1044, 1112, 1119, 1149
TaiI ACGT 1 cut(s) 134
TaqII GACCGA 1 cut(s) 33
TasI AATT 3 cut(s) 610, 834, 1069
TatI WGTACW 3 cut(s) 723, 798, 863
TfiI GAWTC 3 cut(s) 785, 820, 1037
Tru1I TTAA 2 cut(s) 684, 791
Tru9I TTAA 2 cut(s) 684, 791
TscAI CASTG 3 cut(s) 23, 1069, 1115
TseFI GTSAC 1 cut(s) 1119
Tsp45I GTSAC 1 cut(s) 1119
TspRI CASTG 3 cut(s) 23, 1069, 1115
Tth111I GACNNNGTC 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 764
VpaK11BI GGWCC 2 cut(s) 346, 486
XapI RAATTY 1 cut(s) 1069
XbaI TCTAGA 1 cut(s) 443
XspI CTAG 2 cut(s) 204, 444
ZrmI AGTACT 2 cut(s) 725, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.