Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0015652

Physical Location & Seq

Genomic Coordinates Reverse (-)

13838284 .. 13840454

Gene Structure 2171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG160400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGAATGGCCAGAAACCAAGCTTCAAGTGATCATCAAACGTCAGATGAAGACTACATAGACATGGAAGTAAGTTCTTCTTCCTCAAACTTCTTCTGTTATTCCATTAGCTCTAGTCCACCACAAACCAGAGAGTTTGAGTTCCAAATGTCCTCAGTTCCTGACCATGACAAGCAGTCCACTACTTCTCCAGCTGATGAGCTCTTCTACAAAGGAACACTCCTCCCTCTTCATCTCCCACCTCGCTTGCAAATGGTCCAAAGTATCCTCCAAACCTCAAACAGTACCAAACTTGATACCAAAACCCAACAAGCTATTGAACAAAGCTTCAACCTTCCCTTCATCAAAAGCTCTAGAACTGCTCCCAACACTAACACAAGTACCCCATTGGATAGGTCCTGCAATATCTCACCCTCAGAGTCTTGCAGAGTAAGTAGTGAGCTAAACCCCGATGATTATGTCTCTGAATGGACAGAAGAAATGAGTGCTTTCATTGGTGATGATCCTTCAAAAAAATCTAATTGGTCAAAAAAGCTGAAGCAAATAAAGCAGTTCATTTTGAGTCAAAAGCTCAAGGCTTCAAGGGCATATGTTAAGTCCTTGTTCAGTAAGTCCACTTGTGCAGATCATGAGTACTCCTCAGCCAAGTCAGCAAGCAATGCAGAACCAGAAAATGGCTCAAAAGGTAACAAGGATTCCTTAAACAAGTACATGAAGATGGCAAAGAAGAATCCATTTGGGAAAATTGACAATGGGAGATATCAGATTTCAAGTACTACTCTCATGAAGAGCATTGAGAAAGAAATGGCTGAGGAAAATGCCAACACAAATCACAGAAAGTCATTCTCTGGGGCATTTCAACAACACTCAATGTGTTCCTCAACAACTTCATCTGTTTCTTCTTCTTCATCTTCTTCCTTTTCATTTAGTTCAAGTGGGTTCTCAGATTCACAGTTGCTCAAGAGGAGTATCAGTGCAAATTCTGAGATTGAGAGCTCCATTGAAGGAGCCATTGCTCACTGTAAACAGTCACAGCAGATTGTGGGTGTGAAGAGACAGTTTGTGGGGGTCAAGAGACACCAGGATTTGCCCAATGCCACATCCAAAGCCATGCGAGAGACACACATGATTGCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

379

Amino Acids

42.06

Weight (kDa)

8.72

Isoelectric Point (pI)

64.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14700
malus_domestica	MD04G1117200.v1.1 MD12G1132800.v1.1
prunus_persica	Prupe.6G246800_v2.0.a1
pyrus_communis	pycom04g10690
rosa_chinensis	RchiOBHm_Chr3g0467911
rosa_laevigata	RLG00000024468
rosa_multiflora	Rmu_sc0001793.1_g000046 Rmu_sc0001793.1_g000047
rosa_roxburghii	Rroxscaffold_6G00413320
rosa_rugosa	Rorug03G0090500
rosa_samantha	Rh3AG138800 Rh3BG160400 Rh3CG160400 Rh3DG161000
rosa_wichuraiana	Rw3G013150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	674
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	979
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	5 cut(s)	286, 382, 635, 710, 775
AfiI	CCNNNNNNNGG	1 cut(s)	674
AgsI	TTSAA	9 cut(s)	27, 320, 331, 510, 582, 771, 860, 933, 1004
AhdI	GACNNNNNGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	1080
Alw21I	GWGCWC	2 cut(s)	204, 998
Alw26I	GTCTC	4 cut(s)	466, 1048, 1069, 1112
AlwI	GGATC	1 cut(s)	497
AlwNI	CAGNNNCTG	1 cut(s)	161
AoxI	GGCC	1 cut(s)	9
ApoI	RAATTY	1 cut(s)	979
AspS9I	GGNCC	2 cut(s)	256, 396
AsuHPI	GGTGA	2 cut(s)	402, 509
AvaII	GGWCC	2 cut(s)	256, 396
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BalI	TGGCCA	1 cut(s)	11
BanII	GRGCYC	2 cut(s)	204, 998
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	204, 998
BbvCI	CCTCAGC	2 cut(s)	640, 810
BccI	CCATC	1 cut(s)	712
BciT130I	CCWGG	1 cut(s)	1082
BciVI	GTATCC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	31
BcoDI	GTCTC	4 cut(s)	466, 1048, 1069, 1112
BfaI	CTAG	2 cut(s)	114, 354
BfuI	GTATCC	1 cut(s)	275
BmcAI	AGTACT	2 cut(s)	635, 775
Bme1390I	CCNGG	1 cut(s)	1082
Bme18I	GGWCC	2 cut(s)	256, 396
BmeRI	GACNNNNNGTC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	256, 396
BmiI	GGNNCC	1 cut(s)	1009
BmrFI	CCNGG	1 cut(s)	1082
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	623, 655
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	2 cut(s)	640, 810
BpuEI	CTTGAG	2 cut(s)	557, 944
BsaXI	ACNNNNNCTCC	4 cut(s)	172, 202, 958, 988
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
Bse3DI	GCAATG	2 cut(s)	664, 1011
BseBI	CCWGG	1 cut(s)	1082
BseGI	GGATG	1 cut(s)	1100
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseMI	GCAATG	2 cut(s)	664, 1011
BseMII	CTCAG	6 cut(s)	168, 429, 654, 801, 957, 975
BseRI	GAGGAG	3 cut(s)	212, 628, 979
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	2 cut(s)	204, 998
BslI	CCNNNNNNNGG	1 cut(s)	674
BsmAI	GTCTC	4 cut(s)	466, 1048, 1069, 1112
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	2 cut(s)	204, 998
Bsp143I	GATC	3 cut(s)	31, 502, 625
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	6 cut(s)	167, 428, 653, 802, 956, 976
BspHI	TCATGA	2 cut(s)	628, 783
BspLI	GGNNCC	1 cut(s)	1009
BspPI	GGATC	1 cut(s)	497
BspQI	GCTCTTC	2 cut(s)	209, 782
BsrDI	GCAATG	2 cut(s)	664, 1011
BssMI	GATC	3 cut(s)	31, 502, 625
Bst2UI	CCWGG	1 cut(s)	1082
Bst4CI	ACNGT	5 cut(s)	284, 954, 1022, 1029, 1059
Bst6I	CTCTTC	4 cut(s)	209, 234, 782, 1046
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	248, 655
BstDEI	CTNAG	6 cut(s)	154, 415, 640, 810, 943, 984
BstF5I	GGATG	1 cut(s)	1100
BstKTI	GATC	3 cut(s)	34, 505, 628
BstMAI	GTCTC	4 cut(s)	466, 1048, 1069, 1112
BstMBI	GATC	3 cut(s)	31, 502, 625
BstMWI	GCNNNNNNNGC	4 cut(s)	547, 584, 650, 659
BstNI	CCWGG	1 cut(s)	1082
BstSCI	CCNGG	1 cut(s)	1080
BstV2I	GAAGAC	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	1100
BtsIMutI	CAGTG	2 cut(s)	979, 1018
Cac8I	GCNNGC	2 cut(s)	248, 655
CaiI	CAGNNNCTG	1 cut(s)	161
CciI	TCATGA	2 cut(s)	628, 783
Cfr13I	GGNCC	2 cut(s)	256, 396
Csp6I	GTAC	5 cut(s)	285, 381, 634, 709, 774
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CviAII	CATG	7 cut(s)	64, 167, 629, 712, 784, 1111, 1126
CviQI	GTAC	5 cut(s)	285, 381, 634, 709, 774
DdeI	CTNAG	6 cut(s)	154, 415, 640, 810, 943, 984
DpnI	GATC	3 cut(s)	33, 504, 627
DpnII	GATC	3 cut(s)	31, 502, 625
DriI	GACNNNNNGTC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	4 cut(s)	209, 234, 782, 1046
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	4 cut(s)	209, 234, 782, 1046
Ecl136II	GAGCTC	2 cut(s)	202, 996
Eco24I	GRGCYC	2 cut(s)	204, 998
Eco32I	GATATC	1 cut(s)	761
Eco47I	GGWCC	2 cut(s)	256, 396
Eco53kI	GAGCTC	2 cut(s)	202, 996
Eco57I	CTGAAG	1 cut(s)	557
EcoICRI	GAGCTC	2 cut(s)	202, 996
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	1080
EcoRV	GATATC	1 cut(s)	761
EcoT38I	GRGCYC	2 cut(s)	204, 998
FaeI	CATG	7 cut(s)	67, 170, 632, 715, 787, 1114, 1129
FalI	AAGNNNNNCTT	4 cut(s)	64, 96, 683, 715
FatI	CATG	7 cut(s)	63, 166, 628, 711, 783, 1110, 1125
FauNDI	CATATG	1 cut(s)	589
FbaI	TGATCA	1 cut(s)	31
FokI	GGATG	1 cut(s)	1087
FriOI	GRGCYC	2 cut(s)	204, 998
FspBI	CTAG	2 cut(s)	114, 354
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	11
Hin1II	CATG	7 cut(s)	67, 170, 632, 715, 787, 1114, 1129
HindIII	AAGCTT	2 cut(s)	21, 325
HinfI	GANTC	5 cut(s)	419, 562, 695, 730, 947
HphI	GGTGA	2 cut(s)	402, 509
Hpy166II	GTNNAC	4 cut(s)	119, 180, 615, 1025
Hpy188I	TCNGA	6 cut(s)	46, 418, 466, 765, 946, 985
Hpy188III	TCNNGA	6 cut(s)	161, 354, 629, 784, 961, 1072
Hpy8I	GTNNAC	4 cut(s)	119, 180, 615, 1025
HpyAV	CCTTC	4 cut(s)	344, 349, 516, 998
HpyCH4III	ACNGT	5 cut(s)	284, 954, 1022, 1029, 1059
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	7 cut(s)	250, 402, 426, 623, 662, 977, 1133
HpyF10VI	GCNNNNNNNGC	4 cut(s)	547, 584, 650, 659
HpyF3I	CTNAG	6 cut(s)	154, 415, 640, 810, 943, 984
HpySE526I	ACGT	1 cut(s)	41
Hsp92II	CATG	7 cut(s)	67, 170, 632, 715, 787, 1114, 1129
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	3 cut(s)	31, 502, 625
LguI	GCTCTTC	2 cut(s)	209, 782
LmnI	GCTCC	3 cut(s)	367, 1001, 1007
LpnPI	CCDG	9 cut(s)	25, 142, 174, 204, 412, 681, 834, 1067, 1094
MaeI	CTAG	2 cut(s)	114, 354
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	686, 1029
MalI	GATC	3 cut(s)	33, 504, 627
MboI	GATC	3 cut(s)	31, 502, 625
MhlI	GDGCHC	2 cut(s)	204, 998
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	3 cut(s)	520, 744, 979
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	2 cut(s)	428, 571
Mox20I	TGGCCA	1 cut(s)	11
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	2 cut(s)	594, 701
MslI	CAYNNNNRTG	2 cut(s)	62, 716
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	1082
MvaI	CCWGG	1 cut(s)	1082
MwoI	GCNNNNNNNGC	4 cut(s)	547, 584, 650, 659
NdeI	CATATG	1 cut(s)	589
NdeII	GATC	3 cut(s)	31, 502, 625
NlaIII	CATG	7 cut(s)	67, 170, 632, 715, 787, 1114, 1129
NlaIV	GGNNCC	1 cut(s)	1009
NmuCI	GTSAC	1 cut(s)	1029
PagI	TCATGA	2 cut(s)	628, 783
PciSI	GCTCTTC	2 cut(s)	209, 782
PfeI	GAWTC	3 cut(s)	695, 730, 947
PflMI	CCANNNNNTGG	1 cut(s)	674
PleI	GAGTC	2 cut(s)	427, 570
PpsI	GAGTC	2 cut(s)	427, 570
PpuMI	RGGWCCY	1 cut(s)	396
Psp124BI	GAGCTC	2 cut(s)	204, 998
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	1080
PspGI	CCWGG	1 cut(s)	1080
PspN4I	GGNNCC	1 cut(s)	1009
PspPI	GGNCC	2 cut(s)	256, 396
PspPPI	RGGWCCY	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	5 cut(s)	286, 382, 635, 710, 775
RsaNI	GTAC	5 cut(s)	285, 381, 634, 709, 774
RseI	CAYNNNNRTG	2 cut(s)	62, 716
SacI	GAGCTC	2 cut(s)	204, 998
SapI	GCTCTTC	2 cut(s)	209, 782
SaqAI	TTAA	2 cut(s)	594, 701
Sau3AI	GATC	3 cut(s)	31, 502, 625
Sau96I	GGNCC	2 cut(s)	256, 396
ScaI	AGTACT	2 cut(s)	635, 775
SchI	GAGTC	2 cut(s)	428, 571
ScrFI	CCNGG	1 cut(s)	1082
SduI	GDGCHC	2 cut(s)	204, 998
SinI	GGWCC	2 cut(s)	256, 396
SmiMI	CAYNNNNRTG	2 cut(s)	62, 716
SmlI	CTYRAG	2 cut(s)	572, 959
SmoI	CTYRAG	2 cut(s)	572, 959
Sse9I	AATT	3 cut(s)	520, 744, 979
SspMI	CTAG	2 cut(s)	114, 354
SstI	GAGCTC	2 cut(s)	204, 998
StyD4I	CCNGG	1 cut(s)	1080
TaaI	ACNGT	5 cut(s)	284, 954, 1022, 1029, 1059
TaiI	ACGT	1 cut(s)	44
TasI	AATT	3 cut(s)	520, 744, 979
TatI	WGTACW	3 cut(s)	633, 708, 773
TfiI	GAWTC	3 cut(s)	695, 730, 947
Tru1I	TTAA	2 cut(s)	594, 701
Tru9I	TTAA	2 cut(s)	594, 701
TscAI	CASTG	2 cut(s)	979, 1025
TseFI	GTSAC	1 cut(s)	1029
Tsp45I	GTSAC	1 cut(s)	1029
TspRI	CASTG	2 cut(s)	979, 1025
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	2 cut(s)	256, 396
XapI	RAATTY	1 cut(s)	979
XbaI	TCTAGA	1 cut(s)	353
XspI	CTAG	2 cut(s)	114, 354
ZrmI	AGTACT	2 cut(s)	635, 775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.