Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001793.1

Orthogroup ID

OG0015652

Physical Location & Seq

Genomic Coordinates Reverse (-)

205297 .. 206430

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001793.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

atggccagaaaccaagcttcaagtgatcatcaaacgtcagatgaagactacatagacatggaagtaagttcttcttcctcaaacttcttctgttattccattagctctagtccaccacaaaccagagagtttgagttccaaatgtcctcagttcctgaccatgacaagcagtcaactacttctccagctgatgagctcttctacaaaggaacactcctccctcttcatctcccacctcgcttgcaaatggtccaaagtatcctccaaacctcaaacagtaccaaacttgataccaaaacccaacaagctattgaacaaagcttcaaccttcccttcatcaaaagctctagaactgctcccaacactaacacaagtaccccattggataggtcctgcaatatctcaccctcagagtcttgcagagtaagtagtgagctaaaccccgatgattatgtatctgaatggacagaagaaatgagtgctttcattggtgatgatccttcaaaaaaatctaattggtcaaaaaagctgaagcaaataaagcagttcattttgagtcaaaagctcaaggcttcaagggcatatgttaagtccttgttcagtaagtccacttgtgcagatcatgagtactcctcagccaagtcagcaagcaatgcagaaccagaaaatggctcaaaaggtaacaaggattccttaaacaagtacatgaagatggcaaagaagaatccatttgggaaaattgacaatgggagatatcagatttcaagtactactctcatgaagagcattgagaaagaaatggctgaggaaaatgccaacacaaatcacagaaagtcattctctggggcatttcaacaacactcaatgtgttcctcaacaacttcatctgtttcttcttcttcatcttcttccttttcatttagttcaagtgggttctcagattcacagttgctcaagaggagtatcagtgcaaattctgagattgagagctccattgaaggagccattgctcactgtaaacagtcacagcagattgtgggtgtgaagagacagtttgtgggggtcaagagacaccaggatttgcccaatgccacatccaaagccatgcgagagacacacatgattgcattatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

41.77

Weight (kDa)

8.57

Isoelectric Point (pI)

65.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015652)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14700
malus_domestica	MD04G1117200.v1.1 MD12G1132800.v1.1
prunus_persica	Prupe.6G246800_v2.0.a1
pyrus_communis	pycom04g10690
rosa_chinensis	RchiOBHm_Chr3g0467911
rosa_laevigata	RLG00000024468
rosa_multiflora	Rmu_sc0001793.1_g000046 Rmu_sc0001793.1_g000047
rosa_roxburghii	Rroxscaffold_6G00413320
rosa_rugosa	Rorug03G0090500
rosa_samantha	Rh3AG138800 Rh3BG160400 Rh3CG160400 Rh3DG161000
rosa_wichuraiana	Rw3G013150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	668
AclWI	GGATC	1 cut(s)	491
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	973
AcuI	CTGAAG	1 cut(s)	551
AfaI	GTAC	5 cut(s)	280, 376, 629, 704, 769
AfiI	CCNNNNNNNGG	1 cut(s)	668
AgsI	TTSAA	9 cut(s)	21, 314, 325, 504, 576, 765, 854, 927, 998
AhdI	GACNNNNNGTC	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	1074
Alw21I	GWGCWC	2 cut(s)	198, 992
Alw26I	GTCTC	3 cut(s)	1042, 1063, 1106
AlwI	GGATC	1 cut(s)	491
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	973
AspS9I	GGNCC	2 cut(s)	250, 390
AsuHPI	GGTGA	2 cut(s)	396, 503
AvaII	GGWCC	2 cut(s)	250, 390
BaeI	ACNNNNGTAYC	2 cut(s)	358, 391
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	198, 992
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	198, 992
BbvCI	CCTCAGC	2 cut(s)	634, 804
BccI	CCATC	1 cut(s)	706
BciT130I	CCWGG	1 cut(s)	1076
BciVI	GTATCC	1 cut(s)	269
BclI	TGATCA	1 cut(s)	25
BcoDI	GTCTC	3 cut(s)	1042, 1063, 1106
BfaI	CTAG	2 cut(s)	108, 348
BfuI	GTATCC	1 cut(s)	269
BmcAI	AGTACT	2 cut(s)	629, 769
Bme1390I	CCNGG	1 cut(s)	1076
Bme18I	GGWCC	2 cut(s)	250, 390
BmeRI	GACNNNNNGTC	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	250, 390
BmiI	GGNNCC	1 cut(s)	1003
BmrFI	CCNGG	1 cut(s)	1076
BpiI	GAAGAC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	617, 649
BpmI	CTGGAG	1 cut(s)	168
Bpu10I	CCTNAGC	2 cut(s)	634, 804
BpuEI	CTTGAG	2 cut(s)	551, 938
BsaXI	ACNNNNNCTCC	4 cut(s)	166, 196, 952, 982
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse3DI	GCAATG	2 cut(s)	658, 1005
BseBI	CCWGG	1 cut(s)	1076
BseGI	GGATG	1 cut(s)	1094
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMI	GCAATG	2 cut(s)	658, 1005
BseMII	CTCAG	6 cut(s)	162, 423, 648, 795, 951, 969
BseRI	GAGGAG	3 cut(s)	206, 622, 973
BsgI	GTGCAG	1 cut(s)	636
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	2 cut(s)	198, 992
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	3 cut(s)	1042, 1063, 1106
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	198, 992
Bsp143I	GATC	3 cut(s)	25, 496, 619
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	6 cut(s)	161, 422, 647, 796, 950, 970
BspHI	TCATGA	2 cut(s)	622, 777
BspLI	GGNNCC	1 cut(s)	1003
BspPI	GGATC	1 cut(s)	491
BspQI	GCTCTTC	2 cut(s)	203, 776
BsrDI	GCAATG	2 cut(s)	658, 1005
BssMI	GATC	3 cut(s)	25, 496, 619
Bst2UI	CCWGG	1 cut(s)	1076
Bst4CI	ACNGT	5 cut(s)	278, 948, 1016, 1023, 1053
Bst6I	CTCTTC	4 cut(s)	203, 228, 776, 1040
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstC8I	GCNNGC	2 cut(s)	242, 649
BstDEI	CTNAG	6 cut(s)	148, 409, 634, 804, 937, 978
BstF5I	GGATG	1 cut(s)	1094
BstKTI	GATC	3 cut(s)	28, 499, 622
BstMAI	GTCTC	3 cut(s)	1042, 1063, 1106
BstMBI	GATC	3 cut(s)	25, 496, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	541, 578, 644, 653
BstNI	CCWGG	1 cut(s)	1076
BstSCI	CCNGG	1 cut(s)	1074
BstV2I	GAAGAC	1 cut(s)	51
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	1094
BtsIMutI	CAGTG	2 cut(s)	973, 1012
Cac8I	GCNNGC	2 cut(s)	242, 649
CaiI	CAGNNNCTG	1 cut(s)	155
CciI	TCATGA	2 cut(s)	622, 777
Cfr13I	GGNCC	2 cut(s)	250, 390
Csp6I	GTAC	5 cut(s)	279, 375, 628, 703, 768
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	7 cut(s)	58, 161, 623, 706, 778, 1105, 1120
CviQI	GTAC	5 cut(s)	279, 375, 628, 703, 768
DdeI	CTNAG	6 cut(s)	148, 409, 634, 804, 937, 978
DpnI	GATC	3 cut(s)	27, 498, 621
DpnII	GATC	3 cut(s)	25, 496, 619
DriI	GACNNNNNGTC	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	203, 228, 776, 1040
Eam1105I	GACNNNNNGTC	1 cut(s)	169
EarI	CTCTTC	4 cut(s)	203, 228, 776, 1040
Ecl136II	GAGCTC	2 cut(s)	196, 990
Eco24I	GRGCYC	2 cut(s)	198, 992
Eco32I	GATATC	1 cut(s)	755
Eco47I	GGWCC	2 cut(s)	250, 390
Eco53kI	GAGCTC	2 cut(s)	196, 990
Eco57I	CTGAAG	1 cut(s)	551
EcoICRI	GAGCTC	2 cut(s)	196, 990
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	1074
EcoRV	GATATC	1 cut(s)	755
EcoT38I	GRGCYC	2 cut(s)	198, 992
FaeI	CATG	7 cut(s)	61, 164, 626, 709, 781, 1108, 1123
FalI	AAGNNNNNCTT	4 cut(s)	58, 90, 677, 709
FatI	CATG	7 cut(s)	57, 160, 622, 705, 777, 1104, 1119
FauNDI	CATATG	1 cut(s)	583
FbaI	TGATCA	1 cut(s)	25
FokI	GGATG	1 cut(s)	1081
FriOI	GRGCYC	2 cut(s)	198, 992
FspBI	CTAG	2 cut(s)	108, 348
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	61, 164, 626, 709, 781, 1108, 1123
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	2 cut(s)	15, 319
HinfI	GANTC	5 cut(s)	413, 556, 689, 724, 941
HphI	GGTGA	2 cut(s)	396, 503
Hpy166II	GTNNAC	4 cut(s)	113, 174, 609, 1019
Hpy188I	TCNGA	6 cut(s)	40, 412, 460, 759, 940, 979
Hpy188III	TCNNGA	6 cut(s)	155, 348, 623, 778, 955, 1066
Hpy8I	GTNNAC	4 cut(s)	113, 174, 609, 1019
HpyAV	CCTTC	4 cut(s)	338, 343, 510, 992
HpyCH4III	ACNGT	5 cut(s)	278, 948, 1016, 1023, 1053
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	7 cut(s)	244, 396, 420, 617, 656, 971, 1127
HpyF10VI	GCNNNNNNNGC	4 cut(s)	541, 578, 644, 653
HpyF3I	CTNAG	6 cut(s)	148, 409, 634, 804, 937, 978
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	7 cut(s)	61, 164, 626, 709, 781, 1108, 1123
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	25, 496, 619
LguI	GCTCTTC	2 cut(s)	203, 776
LmnI	GCTCC	3 cut(s)	361, 995, 1001
LpnPI	CCDG	9 cut(s)	19, 136, 168, 198, 406, 675, 828, 1061, 1088
MaeI	CTAG	2 cut(s)	108, 348
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	680, 1023
MalI	GATC	3 cut(s)	27, 498, 621
MboI	GATC	3 cut(s)	25, 496, 619
MhlI	GDGCHC	2 cut(s)	198, 992
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	514, 738, 973
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	422, 565
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	588, 695
MslI	CAYNNNNRTG	2 cut(s)	56, 710
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	1076
MvaI	CCWGG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	4 cut(s)	541, 578, 644, 653
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	3 cut(s)	25, 496, 619
NlaIII	CATG	7 cut(s)	61, 164, 626, 709, 781, 1108, 1123
NlaIV	GGNNCC	1 cut(s)	1003
NmuCI	GTSAC	1 cut(s)	1023
PagI	TCATGA	2 cut(s)	622, 777
PciSI	GCTCTTC	2 cut(s)	203, 776
PfeI	GAWTC	3 cut(s)	689, 724, 941
PflMI	CCANNNNNTGG	1 cut(s)	668
PleI	GAGTC	2 cut(s)	421, 564
PpsI	GAGTC	2 cut(s)	421, 564
PpuMI	RGGWCCY	1 cut(s)	390
Psp124BI	GAGCTC	2 cut(s)	198, 992
Psp5II	RGGWCCY	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	1074
PspGI	CCWGG	1 cut(s)	1074
PspN4I	GGNNCC	1 cut(s)	1003
PspPI	GGNCC	2 cut(s)	250, 390
PspPPI	RGGWCCY	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	5 cut(s)	280, 376, 629, 704, 769
RsaNI	GTAC	5 cut(s)	279, 375, 628, 703, 768
RseI	CAYNNNNRTG	2 cut(s)	56, 710
SacI	GAGCTC	2 cut(s)	198, 992
SapI	GCTCTTC	2 cut(s)	203, 776
SaqAI	TTAA	2 cut(s)	588, 695
Sau3AI	GATC	3 cut(s)	25, 496, 619
Sau96I	GGNCC	2 cut(s)	250, 390
ScaI	AGTACT	2 cut(s)	629, 769
SchI	GAGTC	2 cut(s)	422, 565
ScrFI	CCNGG	1 cut(s)	1076
SduI	GDGCHC	2 cut(s)	198, 992
SinI	GGWCC	2 cut(s)	250, 390
SmiMI	CAYNNNNRTG	2 cut(s)	56, 710
SmlI	CTYRAG	2 cut(s)	566, 953
SmoI	CTYRAG	2 cut(s)	566, 953
Sse9I	AATT	3 cut(s)	514, 738, 973
SspMI	CTAG	2 cut(s)	108, 348
SstI	GAGCTC	2 cut(s)	198, 992
StyD4I	CCNGG	1 cut(s)	1074
TaaI	ACNGT	5 cut(s)	278, 948, 1016, 1023, 1053
TaiI	ACGT	1 cut(s)	38
TasI	AATT	3 cut(s)	514, 738, 973
TatI	WGTACW	3 cut(s)	627, 702, 767
TfiI	GAWTC	3 cut(s)	689, 724, 941
Tru1I	TTAA	2 cut(s)	588, 695
Tru9I	TTAA	2 cut(s)	588, 695
TscAI	CASTG	2 cut(s)	973, 1019
TseFI	GTSAC	1 cut(s)	1023
Tsp45I	GTSAC	1 cut(s)	1023
TspRI	CASTG	2 cut(s)	973, 1019
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	250, 390
XapI	RAATTY	1 cut(s)	973
XbaI	TCTAGA	1 cut(s)	347
XspI	CTAG	2 cut(s)	108, 348
ZrmI	AGTACT	2 cut(s)	629, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.