Rorug03G0090500

membrane-associated kinase regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015652
Physical Location & Seq
Forward (+)
7044942 .. 7053943
9002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0090500.1

Sequence Viewer

Length: 1170 bp
ATGGCAACTATGAGATTGCTGCTCTTTCTTGCTTTATACTCTGTAGGGATTCATGTGATCTCCTCTCTTACGGACCAAAATGACGCTGCGGTGATGATGATCTTGAGAGATTCATGGAAAAACACACCATCTAGCTGGGAACACTCCGATGATCCCTGCGGTGTGCCATGGGAAGGAGTCAACTGTACTGGTGCAAGGGTGACTGAATTGAGTTTATCAGCCATGGGGCTCATAGGGGAACTTTCCACCGGCTACATTGGGCAACTCGATGAACTAACGTCTTTGGATGTGTCATTCAATCCTGGTATCACAGGTCGTATTTCTCTACAAATATCATTTCTCCTGAAGTTAAATACCCTGAACCTAGCTGGATGCAGCTTCAGTGGTAGTATTCCAGATCAGTTGGGAGATATTGAACAGCTAACCTTCTTGGCTCTGAATTCAAATAACTTATCTGGAACAATACCTTCTGCTTTGGGTCAACTCTCCAACCTCTACTTGCTTGATCTATCAGACAATCAGCTGACTGGACCTCTCCCAATCTCAACCTCTACTTCTCCAGGAGGATTAGACCTCTTGTTAAAGGCTGAACACTTCCATTTGAGCAACAACCAGCTTTCAGGTTCCATTCCACCCGAGCTTTTCAGTTCTGACATGAGACTGATTCATCTGTTCCTTGATGGAAATAAACTTACCGGGGTTATTCCAATGACTTTAGGACTTGTTCAGACTTTTGAGATGGTCCGGCTTAATAGAAATACTCTGACCGGAAGTGTCCCCTCAAACCTAAACAACCTTACAAATGTCAATGAACTGAATTTGGGCAACAACAACTTGACAGGCCTTTTGCCAGACTTGACTGGAATGAATTCCCTCAATTATGTAGACCTTAGTAACAACTCATTTGACCCATCAGTAGCTCCACTTTGGTTCTCAACCTTACCCACACTTACCACTCTGGTTATGGAATTCGGATCACTTCAAGGGCCTGTGCCAGAGAAGCTTTTCAGCCTTCCAGAATTACAGGAAGTGAAACTGAAATACAATACATTTAACGGTACACTGAACATGGGTGATAACATCAGTCTACAACTGGAGCTTGTGGATCTCCAGAACAATCAGATTTCCCATCTCACTATAGGAGAAGAATACAAGGATGCATTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

42.17

Weight (kDa)

4.36

Isoelectric Point (pI)

24.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015652)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14700
malus_domestica MD04G1117200.v1.1 MD12G1132800.v1.1
prunus_persica Prupe.6G246800_v2.0.a1
pyrus_communis pycom04g10690
rosa_chinensis RchiOBHm_Chr3g0467911
rosa_laevigata RLG00000024468
rosa_multiflora Rmu_sc0001793.1_g000046 Rmu_sc0001793.1_g000047
rosa_roxburghii Rroxscaffold_6G00413320
rosa_rugosa Rorug03G0090500
rosa_samantha Rh3AG138800 Rh3BG160400 Rh3CG160400 Rh3DG161000
rosa_wichuraiana Rw3G013150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 885, 1087
AciI CCGC 2 cut(s) 89, 159
AclWI GGATC 3 cut(s) 146, 982, 1113
AcsI RAATTY 4 cut(s) 439, 817, 868, 968
AcuI CTGAAG 2 cut(s) 364, 365
AfaI GTAC 2 cut(s) 187, 1060
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 4 cut(s) 298, 416, 444, 983
AjnI CCWGG 2 cut(s) 301, 559
Alw26I GTCTC 1 cut(s) 652
AlwI GGATC 3 cut(s) 146, 982, 1113
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 2 cut(s) 841, 986
ApeKI GCWGC 3 cut(s) 19, 86, 375
ApoI RAATTY 4 cut(s) 439, 817, 868, 968
ArsI GACNNNNNNTTYG 2 cut(s) 829, 861
AseI ATTAAT 1 cut(s) 1163
Asp700I GAANNNNTTC 2 cut(s) 868, 1004
AspS9I GGNCC 4 cut(s) 73, 530, 742, 986
AsuC2I CCSGG 1 cut(s) 697
AsuHPI GGTGA 3 cut(s) 103, 211, 1085
AvaI CYCGRG 1 cut(s) 635
AvaII GGWCC 3 cut(s) 73, 530, 742
BanII GRGCYC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 6, 73, 387
BccI CCATC 5 cut(s) 136, 674, 733, 919, 1137
BciT130I CCWGG 2 cut(s) 303, 561
BcnI CCSGG 1 cut(s) 697
BcoDI GTCTC 1 cut(s) 652
BfaI CTAG 2 cut(s) 132, 365
BfmI CTRYAG 2 cut(s) 42, 1137
BisI GCNGC 3 cut(s) 20, 87, 376
BlsI GCNGC 3 cut(s) 21, 88, 377
Bme1390I CCNGG 3 cut(s) 303, 561, 697
Bme18I GGWCC 3 cut(s) 73, 530, 742
BmeT110I CYCGRG 1 cut(s) 635
BmgT120I GGNCC 4 cut(s) 73, 530, 742, 986
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 3 cut(s) 303, 561, 697
BmsI GCATC 2 cut(s) 362, 1147
BpmI CTGGAG 3 cut(s) 543, 1094, 1115
BpuEI CTTGAG 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 697
BsaBI GATNNNNATC 1 cut(s) 98
BsaJI CCNNGG 3 cut(s) 167, 222, 696
BsaWI WCCGGW 1 cut(s) 767
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 4 cut(s) 193, 532, 865, 1098
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 2 cut(s) 303, 561
BseDI CCNNGG 3 cut(s) 167, 222, 696
BseGI GGATG 3 cut(s) 292, 377, 1162
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 173
BseNI ACTGG 4 cut(s) 193, 532, 865, 1098
BseRI GAGGAG 1 cut(s) 52
BseXI GCAGC 3 cut(s) 6, 73, 387
BseYI CCCAGC 1 cut(s) 135
BshFI GGCC 2 cut(s) 843, 988
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 4 cut(s) 249, 696, 745, 768
BslFI GGGAC 1 cut(s) 761
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 652
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 2 cut(s) 843, 988
BsoBI CYCGRG 1 cut(s) 635
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 7 cut(s) 57, 99, 151, 397, 505, 974, 1105
Bsp19I CCATGG 2 cut(s) 167, 222
BspACI CCGC 2 cut(s) 89, 159
BspANI GGCC 2 cut(s) 843, 988
BspLI GGNNCC 1 cut(s) 625
BspPI GGATC 3 cut(s) 146, 982, 1113
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 4 cut(s) 193, 532, 865, 1098
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 167, 222, 696
BssMI GATC 7 cut(s) 57, 99, 151, 397, 505, 974, 1105
BssT1I CCWWGG 2 cut(s) 167, 222
Bst2UI CCWGG 2 cut(s) 303, 561
Bst4CI ACNGT 2 cut(s) 185, 1058
BstDEI CTNAG 1 cut(s) 890
BstDSI CCRYGG 2 cut(s) 167, 222
BstF5I GGATG 3 cut(s) 292, 377, 1162
BstKTI GATC 7 cut(s) 60, 102, 154, 400, 508, 977, 1108
BstMAI GTCTC 1 cut(s) 652
BstMBI GATC 7 cut(s) 57, 99, 151, 397, 505, 974, 1105
BstMWI GCNNNNNNNGC 1 cut(s) 1000
BstNI CCWGG 2 cut(s) 303, 561
BstSCI CCNGG 3 cut(s) 301, 559, 695
BstSFI CTRYAG 2 cut(s) 42, 1137
BstV1I GCAGC 3 cut(s) 6, 73, 387
BstX2I RGATCY 1 cut(s) 1105
BstXI CCANNNNNNTGG 1 cut(s) 135
BstYI RGATCY 1 cut(s) 1105
BsuRI GGCC 2 cut(s) 843, 988
BtgI CCRYGG 2 cut(s) 167, 222
BtsCI GGATG 3 cut(s) 292, 377, 1162
BtsIMutI CAGTG 2 cut(s) 388, 1061
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 4 cut(s) 73, 530, 742, 986
CseI GACGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 186, 1059
CviAII CATG 6 cut(s) 53, 114, 168, 223, 655, 1069
CviQI GTAC 2 cut(s) 186, 1059
DdeI CTNAG 1 cut(s) 890
DpnI GATC 7 cut(s) 59, 101, 153, 399, 507, 976, 1107
DpnII GATC 7 cut(s) 57, 99, 151, 397, 505, 974, 1105
Eco130I CCWWGG 2 cut(s) 167, 222
Eco147I AGGCCT 1 cut(s) 843
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 3 cut(s) 73, 530, 742
Eco57I CTGAAG 2 cut(s) 364, 365
Eco88I CYCGRG 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 986
EcoRI GAATTC 3 cut(s) 439, 868, 968
EcoRII CCWGG 2 cut(s) 301, 559
EcoT14I CCWWGG 2 cut(s) 167, 222
EcoT22I ATGCAT 1 cut(s) 1162
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 2 cut(s) 167, 222
FaeI CATG 6 cut(s) 56, 117, 171, 226, 658, 1072
FaqI GGGAC 1 cut(s) 761
FatI CATG 6 cut(s) 52, 113, 167, 222, 654, 1068
FblI GTMKAC 2 cut(s) 885, 1087
Fnu4HI GCNGC 3 cut(s) 20, 87, 376
FokI GGATG 2 cut(s) 299, 384
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 20, 87, 376
FspBI CTAG 2 cut(s) 132, 365
GluI GCNGC 3 cut(s) 20, 87, 376
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 3 cut(s) 543, 1094, 1115
HaeIII GGCC 2 cut(s) 843, 988
HapII CCGG 4 cut(s) 249, 696, 745, 768
HgaI GACGC 1 cut(s) 92
Hin1II CATG 6 cut(s) 56, 117, 171, 226, 658, 1072
HincII GTYRAC 2 cut(s) 181, 482
HindII GTYRAC 2 cut(s) 181, 482
HindIII AAGCTT 1 cut(s) 1001
HinfI GANTC 4 cut(s) 49, 110, 177, 664
HpaII CCGG 4 cut(s) 249, 696, 745, 768
HphI GGTGA 3 cut(s) 103, 211, 1085
Hpy166II GTNNAC 5 cut(s) 181, 482, 886, 1061, 1088
Hpy188I TCNGA 8 cut(s) 148, 438, 514, 652, 729, 765, 974, 1122
Hpy188III TCNNGA 6 cut(s) 103, 343, 395, 456, 1016, 1111
Hpy8I GTNNAC 5 cut(s) 181, 482, 886, 1061, 1088
HpyAV CCTTC 4 cut(s) 167, 436, 477, 1022
HpyCH4III ACNGT 2 cut(s) 185, 1058
HpyCH4IV ACGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 194, 375, 1160
HpyF10VI GCNNNNNNNGC 1 cut(s) 1000
HpyF3I CTNAG 1 cut(s) 890
HpySE526I ACGT 1 cut(s) 278
Hsp92II CATG 6 cut(s) 56, 117, 171, 226, 658, 1072
Kzo9I GATC 7 cut(s) 57, 99, 151, 397, 505, 974, 1105
LmnI GCTCC 2 cut(s) 925, 1096
Lsp1109I GCAGC 3 cut(s) 6, 73, 387
LweI GCATC 2 cut(s) 362, 1147
MaeI CTAG 2 cut(s) 132, 365
MaeII ACGT 1 cut(s) 278
MaeIII GTNAC 2 cut(s) 199, 893
MalI GATC 7 cut(s) 59, 101, 153, 399, 507, 976, 1107
MboI GATC 7 cut(s) 57, 99, 151, 397, 505, 974, 1105
MboII GAAGA 1 cut(s) 1157
MflI RGATCY 1 cut(s) 1105
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 7 cut(s) 206, 439, 817, 868, 877, 968, 1019
MlyI GAGTC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 8 cut(s) 73, 503, 543, 557, 559, 584, 790, 884
Mph1103I ATGCAT 1 cut(s) 1162
MroXI GAANNNNTTC 2 cut(s) 868, 1004
MseI TTAA 5 cut(s) 350, 581, 750, 1053, 1163
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 4 cut(s) 249, 696, 745, 768
MspR9I CCNGG 3 cut(s) 303, 561, 697
MvaI CCWGG 2 cut(s) 303, 561
MwoI GCNNNNNNNGC 1 cut(s) 1000
NciI CCSGG 1 cut(s) 697
NcoI CCATGG 2 cut(s) 167, 222
NdeII GATC 7 cut(s) 57, 99, 151, 397, 505, 974, 1105
NlaIII CATG 6 cut(s) 56, 117, 171, 226, 658, 1072
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 1162
PceI AGGCCT 1 cut(s) 843
PdmI GAANNNNTTC 2 cut(s) 868, 1004
PfeI GAWTC 3 cut(s) 49, 110, 664
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 3 cut(s) 21, 88, 377
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 1163
Psp6I CCWGG 2 cut(s) 301, 559
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 2 cut(s) 301, 559
PspN4I GGNNCC 1 cut(s) 625
PspPI GGNCC 4 cut(s) 73, 530, 742, 986
PsuI RGATCY 1 cut(s) 1105
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 2 cut(s) 187, 1060
RsaNI GTAC 2 cut(s) 186, 1059
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 5 cut(s) 350, 581, 750, 1053, 1163
SatI GCNGC 3 cut(s) 20, 87, 376
Sau3AI GATC 7 cut(s) 57, 99, 151, 397, 505, 974, 1105
Sau96I GGNCC 4 cut(s) 73, 530, 742, 986
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 3 cut(s) 303, 561, 697
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 362, 1147
SfcI CTRYAG 2 cut(s) 42, 1137
SinI GGWCC 3 cut(s) 73, 530, 742
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 7 cut(s) 206, 439, 817, 868, 877, 968, 1019
SseBI AGGCCT 1 cut(s) 843
SsiI CCGC 2 cut(s) 89, 159
SspMI CTAG 2 cut(s) 132, 365
StuI AGGCCT 1 cut(s) 843
StyD4I CCNGG 3 cut(s) 301, 559, 695
StyI CCWWGG 2 cut(s) 167, 222
TaaI ACNGT 2 cut(s) 185, 1058
TaiI ACGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 267
TasI AATT 7 cut(s) 206, 439, 817, 868, 877, 968, 1019
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 3 cut(s) 49, 110, 664
Tru1I TTAA 5 cut(s) 350, 581, 750, 1053, 1163
Tru9I TTAA 5 cut(s) 350, 581, 750, 1053, 1163
TscAI CASTG 2 cut(s) 388, 1068
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 3 cut(s) 19, 86, 375
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 6 cut(s) 41, 102, 285, 656, 825, 881
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 2 cut(s) 388, 1068
VpaK11BI GGWCC 3 cut(s) 73, 530, 742
VspI ATTAAT 1 cut(s) 1163
XapI RAATTY 4 cut(s) 439, 817, 868, 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 961
XmiI GTMKAC 2 cut(s) 885, 1087
XmnI GAANNNNTTC 2 cut(s) 868, 1004
XspI CTAG 2 cut(s) 132, 365
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.