Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017799

Physical Location & Seq

Genomic Coordinates Forward (+)

24500242 .. 24502071

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGACCTCCTTCACGCACAAAGGGAAAATGGAACTCATGGCATGCTCTCTCTCTCTCTTCCCTTAACCATTATCAACGACCACCCACCACTACCCTCATTTCTCTTGTTGGCGCTTCTGCCTCACCACCTCCTCCACAATTTTCAATATTCATTACGCTATCATACTCCACCTGAGTATCCGGCGCCGTTTCGGCATATGTCGCCACGTACTTCGGCGACTGTGGCGGTAGATGCTCAGGTGCTCCCGTCACCGTCCCCAGGAATCCGACGCTCGCTACATGCTTCTCCGTCCAGTAACCTGCCGAAGCTGAAATCTGCTGAGGCATTGTCACCGGAGGAAGCTTTCCGACACCTTTTGCATGTAGTAATCATCGACGGTGGCACAGTAGCCTCCTCCTCCTACTCCGATGAGGTTGTCATCGCTCTTTCTTCGGTATTGATGATCAGTTTGATCTCCAATTTGCAGCCTCTGCAAGTTTTGCAGTTGATTTTGGAACTCCTTTTGTGGATGAATTCATTTGGGAATGTGGATGTGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAAAAGGGAGCAGATGCACTGGAACACTGGTTGTGTGTTAATGGGTTTTCGGCAACTACTATTCATGGTGACAGAACACAACAGGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005777 GO:0005886 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042579 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04622 ko05161 ko05203 map04622 map05161 map05203

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

219

Amino Acids

24.02

Weight (kDa)

6.2

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017799)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478861 RchiOBHm_Chr6g0289461
rosa_laevigata	RLG00000012297 RLG00000034839
rosa_multiflora	Rmu_sc0004838.1_g000006
rosa_roxburghii	Rroxscaffold_7G00166750 Rroxscaffold_7G00177950
rosa_samantha	Rh3AG220300 Rh3DG264300 Rh6BG266800 Rh6CG328500 Rh6DG259500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	184
AciI	CCGC	1 cut(s)	227
AcsI	RAATTY	1 cut(s)	514
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	4 cut(s)	310, 344, 542, 657
AluI	AGCT	4 cut(s)	310, 344, 542, 657
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	557
AlwNI	CAGNNNCTG	1 cut(s)	472
ApeKI	GCWGC	1 cut(s)	466
ApoI	RAATTY	1 cut(s)	514
AspLEI	GCGC	2 cut(s)	115, 187
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	116, 243, 324, 647
AvaII	GGWCC	1 cut(s)	4
BaeI	ACNNNNGTAYC	2 cut(s)	161, 194
BanI	GGYRCC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	246
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	478
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	261
BciVI	GTATCC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	557
BfoI	RGCGCY	2 cut(s)	116, 188
BfuAI	ACCTGC	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	189
BglI	GCCNNNNNGGC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	467
BlsI	GCNGC	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	223, 571
Bpu10I	CCTNAGC	2 cut(s)	237, 321
BsaAI	YACGTR	1 cut(s)	209
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	3 cut(s)	294, 591, 599
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	2 cut(s)	516, 538
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	3 cut(s)	165, 251, 312
BseNI	ACTGG	3 cut(s)	294, 591, 599
BseRI	GAGGAG	3 cut(s)	122, 385, 388
BseXI	GCAGC	1 cut(s)	478
BshNI	GGYRCC	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	2 cut(s)	182, 335
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	2 cut(s)	444, 453
BspACI	CCGC	1 cut(s)	227
BspCNI	CTCAG	3 cut(s)	166, 250, 313
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	184
BsrI	ACTGG	3 cut(s)	294, 591, 599
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	2 cut(s)	444, 453
BssNI	GRCGYC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	4 cut(s)	223, 255, 380, 388
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	185
BstAPI	GCANNNNNTGC	2 cut(s)	472, 481
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	44, 275, 540
BstDEI	CTNAG	3 cut(s)	174, 237, 321
BstF5I	GGATG	2 cut(s)	516, 538
BstH2I	RGCGCY	2 cut(s)	116, 188
BstHHI	GCGC	2 cut(s)	115, 187
BstKTI	GATC	2 cut(s)	447, 456
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	2 cut(s)	444, 453
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 202, 224, 233, 472, 481
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	3 cut(s)	46, 284, 365
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	478
BsuI	GTATCC	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	516, 538
BtsIMutI	CAGTG	2 cut(s)	584, 592
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	3 cut(s)	44, 275, 540
CaiI	CAGNNNCTG	1 cut(s)	472
CfoI	GCGC	2 cut(s)	115, 187
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	5 cut(s)	38, 43, 281, 362, 632
CviJI	RGCY	6 cut(s)	310, 344, 392, 469, 542, 657
CviKI_1	RGCY	6 cut(s)	310, 344, 392, 469, 542, 657
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	3 cut(s)	174, 237, 321
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	2 cut(s)	446, 455
DpnII	GATC	2 cut(s)	444, 453
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
FaeI	CATG	5 cut(s)	41, 46, 284, 365, 635
FaiI	YATR	8 cut(s)	39, 44, 165, 198, 200, 282, 363, 633
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	5 cut(s)	37, 42, 280, 361, 631
FauNDI	CATATG	1 cut(s)	198
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	467
FokI	GGATG	2 cut(s)	523, 545
Fsp4HI	GCNGC	1 cut(s)	467
GlaI	GCGC	2 cut(s)	114, 186
GluI	GCNGC	1 cut(s)	467
HaeII	RGCGCY	2 cut(s)	116, 188
HapII	CCGG	2 cut(s)	182, 335
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	2 cut(s)	115, 187
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	5 cut(s)	41, 46, 284, 365, 635
Hin6I	GCGC	2 cut(s)	113, 185
HinP1I	GCGC	2 cut(s)	113, 185
HindIII	AAGCTT	2 cut(s)	342, 540
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	2 cut(s)	182, 335
HphI	GGTGA	4 cut(s)	116, 243, 324, 647
Hpy188I	TCNGA	3 cut(s)	269, 350, 409
Hpy99I	CGWCG	2 cut(s)	273, 380
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	4 cut(s)	223, 255, 380, 388
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	6 cut(s)	361, 466, 475, 484, 538, 584
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 202, 224, 233, 472, 481
HpyF3I	CTNAG	3 cut(s)	174, 237, 321
HpySE526I	ACGT	1 cut(s)	208
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	5 cut(s)	41, 46, 284, 365, 635
HspAI	GCGC	2 cut(s)	113, 185
KasI	GGCGCC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	2 cut(s)	444, 453
LmnI	GCTCC	2 cut(s)	249, 575
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	2 cut(s)	223, 571
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	4 cut(s)	249, 296, 330, 635
MalI	GATC	2 cut(s)	446, 455
MboI	GATC	2 cut(s)	444, 453
MboII	GAAGA	2 cut(s)	50, 423
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	139, 460, 514
Mly113I	GGCGCC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	292, 373
MseI	TTAA	2 cut(s)	65, 606
MspI	CCGG	2 cut(s)	182, 335
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	6 cut(s)	193, 202, 224, 233, 472, 481
NarI	GGCGCC	1 cut(s)	185
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	2 cut(s)	444, 453
NlaIII	CATG	5 cut(s)	41, 46, 284, 365, 635
NlaIV	GGNNCC	1 cut(s)	186
NmuCI	GTSAC	3 cut(s)	249, 330, 635
NspI	RCATGY	3 cut(s)	46, 284, 365
PaeI	GCATGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	468
PluTI	GGCGCC	1 cut(s)	188
Ppu21I	YACGTR	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	65, 606
SatI	GCNGC	1 cut(s)	467
Sau3AI	GATC	2 cut(s)	444, 453
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	223, 571
SfoI	GGCGCC	1 cut(s)	186
SinI	GGWCC	1 cut(s)	4
SphI	GCATGC	1 cut(s)	46
Sse9I	AATT	3 cut(s)	139, 460, 514
SsiI	CCGC	1 cut(s)	227
SspDI	GGCGCC	1 cut(s)	184
SspI	AATATT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	4 cut(s)	223, 255, 380, 388
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	375
TasI	AATT	3 cut(s)	139, 460, 514
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	65, 606
Tru9I	TTAA	2 cut(s)	65, 606
TscAI	CASTG	2 cut(s)	591, 599
TseFI	GTSAC	3 cut(s)	249, 330, 635
TseI	GCWGC	1 cut(s)	466
Tsp45I	GTSAC	3 cut(s)	249, 330, 635
TspDTI	ATGAA	4 cut(s)	141, 507, 527, 620
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	591, 599
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	3 cut(s)	46, 284, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.