Rh6BG266800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0017799
Physical Location & Seq
Reverse (-)
48234158 .. 48236004
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG266800.1

Sequence Viewer

Length: 285 bp
ATGCTCATCCTCAGAGTAGATATTGACAACGACGTCATATCCGGGATAGCGGAACCAAAGAGCGACGCGTGTCCCGCAGTTCCATTGAGCAGCAGAATAGGCGAACACTACCAAGTTTCACTCTTCTTACCGATCAGTACTACAAGAGAGGATGATGAGCATGGTGAAAAGCAATTCCTCCGGGCTACTTATGGAACACACCGATTCACCTGGACTGACCTCAAACATAAACACGTCAGCTACATTAATTTACAGAAAGCTCTTGGACTTTCATCACTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.61

Weight (kDa)

6.16

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AatII GACGTC 1 cut(s) 36
AccII CGCG 1 cut(s) 68
AciI CCGC 2 cut(s) 50, 75
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 1 cut(s) 139
AflIII ACRYGT 2 cut(s) 66, 232
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 2 cut(s) 240, 260
AluI AGCT 2 cut(s) 240, 260
ApeKI GCWGC 1 cut(s) 90
AseI ATTAAT 1 cut(s) 246
AsuC2I CCSGG 2 cut(s) 43, 182
AsuHPI GGTGA 2 cut(s) 176, 199
BbvI GCAGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 211
BcnI CCSGG 2 cut(s) 43, 182
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BmcAI AGTACT 1 cut(s) 139
Bme1390I CCNGG 3 cut(s) 43, 182, 211
BmgBI CACGTC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 3 cut(s) 43, 182, 211
BoxI GACNNNNGTC 1 cut(s) 69
BpuMI CCSGG 2 cut(s) 43, 182
BsaHI GRCGYC 1 cut(s) 33
BseBI CCWGG 1 cut(s) 211
BseGI GGATG 2 cut(s) 6, 157
BseMII CTCAG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 68
BsiSI CCGG 2 cut(s) 42, 181
BslFI GGGAC 1 cut(s) 57
BsmFI GGGAC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 2 cut(s) 50, 75
BspCNI CTCAG 1 cut(s) 24
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 54
BssMI GATC 1 cut(s) 132
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 11
BstF5I GGATG 2 cut(s) 6, 157
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 2 cut(s) 74, 99
BstNI CCWGG 1 cut(s) 211
BstPAI GACNNNNGTC 1 cut(s) 69
BstSCI CCNGG 3 cut(s) 41, 180, 209
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 102
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 6, 157
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 138
CviAII CATG 1 cut(s) 161
CviJI RGCY 3 cut(s) 185, 240, 260
CviKI_1 RGCY 3 cut(s) 185, 240, 260
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 1 cut(s) 11
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 209
FaeI CATG 1 cut(s) 164
FaiI YATR 5 cut(s) 38, 162, 192, 228, 283
FaqI GGGAC 1 cut(s) 57
FatI CATG 1 cut(s) 160
FauI CCCGC 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 91
HapII CCGG 2 cut(s) 42, 181
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 164
HinfI GANTC 1 cut(s) 204
HpaII CCGG 2 cut(s) 42, 181
HphI GGTGA 2 cut(s) 176, 199
Hpy188I TCNGA 1 cut(s) 14
Hpy99I CGWCG 2 cut(s) 35, 68
HpyCH4IV ACGT 2 cut(s) 33, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 99
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 2 cut(s) 33, 234
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 132
LpnPI CCDG 4 cut(s) 55, 194, 196, 223
Lsp1109I GCAGC 1 cut(s) 102
MaeII ACGT 2 cut(s) 33, 234
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 1 cut(s) 115
MluCI AATT 2 cut(s) 173, 247
MluI ACGCGT 1 cut(s) 66
MnlI CCTC 4 cut(s) 20, 142, 188, 230
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 280
MspI CCGG 2 cut(s) 42, 181
MspR9I CCNGG 3 cut(s) 43, 182, 211
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 74, 99
NciI CCSGG 2 cut(s) 43, 182
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 204
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 1 cut(s) 92
PshAI GACNNNNGTC 1 cut(s) 69
PshBI ATTAAT 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 54
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 1 cut(s) 132
ScaI AGTACT 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 43, 182, 211
SetI ASST 6 cut(s) 36, 212, 222, 237, 242, 262
SmiMI CAYNNNNRTG 1 cut(s) 280
Sse9I AATT 2 cut(s) 173, 247
SsiI CCGC 2 cut(s) 50, 75
StyD4I CCNGG 3 cut(s) 41, 180, 209
TaiI ACGT 2 cut(s) 36, 237
TasI AATT 2 cut(s) 173, 247
TatI WGTACW 1 cut(s) 137
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 261
VspI ATTAAT 1 cut(s) 246
ZraI GACGTC 1 cut(s) 34
ZrmI AGTACT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.