Rroxscaffold_7G00177950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017799
Physical Location & Seq
Forward (+)
17540033 .. 17547813
7781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177950.1

Sequence Viewer

Length: 708 bp
ATGTTCTTGGCTGGAAACAAGGCTGACTTGGAAGAGAAGAGAAAAGTAGGGATTGAGGGTTGGATTCCATCGGGAACTTCGCTGCTGAGCTGCAGAGGCGGGTTGGTGATCAATATAGCAATAATCACCGCCACTTCTGCCTTGCACAGACGACGCCCGACCGGCCACTGGAGTGACTGTGCGGCTTCGACACTTTGGAAAGGTCGAAGGCTACTGGTTTTAGAACCATCGAGCGAGAGAGAGGAAGAAGTGACGACTGTGAACTCGCGTCCATGCCTCTGTCTCATTCTAAGGAACAACAACTACTTTGGAGTAACAAATAATCTGCAAGAGCCAAGAGGTATTGGTTTTGGGACTGAATCATCTTCAGTTGCAAAAGAGGAAGAGCATGGGGACCGGCAATTACTCCGGTCAATTGGTGGAGCAATCCTTCTCGGCTACACCGACCTCGAAAGCACAACGAACAAACGCATCAGCTACACTAATACACACAAAACTCTTGGACTATCATCACCACCATTACGATGTATGATGCTCAGTGCTCCCATCACCATCCACAGGGAATCGACGCTCGCTACATGCTTCTCCATCCGGAACCAGCCGAAGCCGGAATCTGCCGAGGCATCGTCATCGGAGGAAGCTTTCCTACACCTTCTGCATGTAGTAATCACCGGCGACGGCACCGTAGCCTCCCCCTCGCTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.64

Weight (kDa)

8.25

Isoelectric Point (pI)

65.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 680
AccII CGCG 1 cut(s) 268
AccIII TCCGGA 1 cut(s) 591
AciI CCGC 3 cut(s) 99, 129, 182
AcoI YGGCCR 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 351
AcyI GRCGYC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 168, 558
AleI CACNNNNGTG 1 cut(s) 171
AluBI AGCT 3 cut(s) 90, 477, 641
AluI AGCT 3 cut(s) 90, 477, 641
Alw21I GWGCWC 1 cut(s) 544
Alw26I GTCTC 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 591
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 82, 90
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 5 cut(s) 118, 118, 504, 541, 661
AvaII GGWCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 680
BarI GAAGNNNNNNTAC 2 cut(s) 630, 662
Bbv12I GWGCWC 1 cut(s) 544
BbvI GCAGC 2 cut(s) 69, 77
BccI CCATC 5 cut(s) 76, 235, 554, 560, 596
BceAI ACGGC 1 cut(s) 694
BcgI CGANNNNNNTGC 2 cut(s) 612, 646
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 287
BfmI CTRYAG 1 cut(s) 91
BglI GCCNNNNNGGC 1 cut(s) 162
BisI GCNGC 3 cut(s) 83, 91, 183
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 3 cut(s) 84, 92, 184
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 3 cut(s) 395, 596, 682
BmsI GCATC 3 cut(s) 480, 522, 632
BpmI CTGGAG 1 cut(s) 190
Bpu1102I GCTNAGC 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 618
BsaWI WCCGGW 2 cut(s) 408, 591
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 558
Bse118I RCCGGY 3 cut(s) 161, 396, 671
Bse1I ACTGG 2 cut(s) 173, 219
BseAI TCCGGA 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 618
BseGI GGATG 2 cut(s) 552, 588
BseLI CCNNNNNNNGG 2 cut(s) 168, 558
BseMII CTCAG 2 cut(s) 77, 550
BseNI ACTGG 2 cut(s) 173, 219
BseXI GCAGC 2 cut(s) 69, 77
Bsh1236I CGCG 1 cut(s) 268
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 680
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 544
BsiSI CCGG 6 cut(s) 162, 397, 409, 592, 608, 672
BslFI GGGAC 2 cut(s) 367, 407
BslI CCNNNNNNNGG 2 cut(s) 168, 558
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 2 cut(s) 367, 407
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 544
Bsp13I TCCGGA 1 cut(s) 591
Bsp143I GATC 1 cut(s) 108
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 3 cut(s) 99, 129, 182
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 78, 549
BspEI TCCGGA 1 cut(s) 591
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 3 cut(s) 395, 596, 682
BspMAI CTGCAG 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 680
BsrFI RCCGGY 3 cut(s) 161, 396, 671
BsrI ACTGG 2 cut(s) 173, 219
BssAI RCCGGY 3 cut(s) 161, 396, 671
BssECI CCNNGG 1 cut(s) 618
BssMI GATC 1 cut(s) 108
BssNI GRCGYC 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 179, 259, 685
Bst6I CTCTTC 3 cut(s) 27, 32, 378
BstACI GRCGYC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 3 cut(s) 86, 290, 536
BstF5I GGATG 2 cut(s) 552, 588
BstFNI CGCG 1 cut(s) 268
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 108
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 3 cut(s) 96, 137, 162
BstNSI RCATGY 2 cut(s) 582, 662
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 69, 77
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 552, 588
BtsIMutI CAGTG 2 cut(s) 166, 544
Cac8I GCNNGC 1 cut(s) 573
Cfr10I RCCGGY 3 cut(s) 161, 396, 671
Cfr13I GGNCC 1 cut(s) 394
CseI GACGC 3 cut(s) 162, 257, 577
CviAII CATG 4 cut(s) 273, 389, 579, 659
DdeI CTNAG 3 cut(s) 86, 290, 536
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 3 cut(s) 27, 32, 378
EarI CTCTTC 3 cut(s) 27, 32, 378
Eco47I GGWCC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 351
FaeI CATG 4 cut(s) 276, 392, 582, 662
FaiI YATR 6 cut(s) 116, 274, 390, 530, 580, 660
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 2 cut(s) 367, 407
FatI CATG 4 cut(s) 272, 388, 578, 658
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 83, 91, 183
FokI GGATG 2 cut(s) 539, 575
Fsp4HI GCNGC 3 cut(s) 83, 91, 183
GluI GCNGC 3 cut(s) 83, 91, 183
GsuI CTGGAG 1 cut(s) 190
HaeIII GGCC 1 cut(s) 165
HapII CCGG 6 cut(s) 162, 397, 409, 592, 608, 672
HgaI GACGC 3 cut(s) 162, 257, 577
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 4 cut(s) 276, 392, 582, 662
HindIII AAGCTT 1 cut(s) 639
HinfI GANTC 4 cut(s) 64, 359, 563, 611
HpaII CCGG 6 cut(s) 162, 397, 409, 592, 608, 672
HphI GGTGA 5 cut(s) 118, 118, 504, 541, 661
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 634
Hpy188III TCNNGA 2 cut(s) 72, 592
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 3 cut(s) 156, 571, 680
HpyAV CCTTC 3 cut(s) 201, 440, 662
HpyCH4III ACNGT 3 cut(s) 179, 259, 685
HpyCH4V TGCA 5 cut(s) 93, 145, 328, 374, 658
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 137, 162
HpyF3I CTNAG 3 cut(s) 86, 290, 536
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 4 cut(s) 276, 392, 582, 662
Kpn2I TCCGGA 1 cut(s) 591
Ksp22I TGATCA 1 cut(s) 108
Kzo9I GATC 1 cut(s) 108
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 2 cut(s) 422, 547
Lsp1109I GCAGC 2 cut(s) 69, 77
LweI GCATC 3 cut(s) 480, 522, 632
MaeIII GTNAC 3 cut(s) 173, 250, 313
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 5 cut(s) 44, 49, 257, 357, 395
MfeI CAATTG 1 cut(s) 414
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 2 cut(s) 401, 414
MmeI TCCRAC 1 cut(s) 41
MroI TCCGGA 1 cut(s) 591
MslI CAYNNNNRTG 2 cut(s) 171, 523
MspI CCGG 6 cut(s) 162, 397, 409, 592, 608, 672
MunI CAATTG 1 cut(s) 414
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 96, 137, 162
NdeII GATC 1 cut(s) 108
NlaIII CATG 4 cut(s) 276, 392, 582, 662
NlaIV GGNNCC 3 cut(s) 395, 596, 682
NmeAIII GCCGAG 2 cut(s) 414, 643
NmuCI GTSAC 2 cut(s) 173, 250
NspI RCATGY 2 cut(s) 582, 662
OliI CACNNNNGTG 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PfeI GAWTC 4 cut(s) 64, 359, 563, 611
PkrI GCNGC 3 cut(s) 84, 92, 184
PspN4I GGNNCC 3 cut(s) 395, 596, 682
PspPI GGNCC 1 cut(s) 394
PsrI GAACNNNNNNTAC 2 cut(s) 287, 319
PstI CTGCAG 1 cut(s) 95
RseI CAYNNNNRTG 2 cut(s) 171, 523
SapI GCTCTTC 1 cut(s) 378
SatI GCNGC 3 cut(s) 83, 91, 183
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 394
SduI GDGCHC 1 cut(s) 544
SetI ASST 7 cut(s) 92, 205, 343, 450, 479, 643, 654
SfaNI GCATC 3 cut(s) 480, 522, 632
SfcI CTRYAG 1 cut(s) 91
SgrAI CRCCGGYG 1 cut(s) 671
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 2 cut(s) 171, 523
Sse9I AATT 2 cut(s) 401, 414
SsiI CCGC 3 cut(s) 99, 129, 182
TaaI ACNGT 3 cut(s) 179, 259, 685
TaqI TCGA 6 cut(s) 188, 205, 230, 450, 566, 703
TasI AATT 2 cut(s) 401, 414
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 4 cut(s) 64, 359, 563, 611
TscAI CASTG 2 cut(s) 173, 544
TseFI GTSAC 2 cut(s) 173, 250
TseI GCWGC 2 cut(s) 82, 90
Tsp45I GTSAC 2 cut(s) 173, 250
TspRI CASTG 2 cut(s) 173, 544
VpaK11BI GGWCC 1 cut(s) 394
XceI RCATGY 2 cut(s) 582, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.