ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0478861 RchiOBHm_Chr6g0289461 |
| rosa_laevigata | RLG00000012297 RLG00000034839 |
| rosa_multiflora | Rmu_sc0004838.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00166750 Rroxscaffold_7G00177950 |
| rosa_samantha | Rh3AG220300 Rh3DG264300 Rh6BG266800 Rh6CG328500 Rh6DG259500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 435 |
| AccB1I | GGYRCC | 3 cut(s) | 328, 515, 1347 |
| AccI | GTMKAC | 1 cut(s) | 323 |
| AccII | CGCG | 1 cut(s) | 122 |
| AciI | CCGC | 8 cut(s) | 71, 371, 392, 510, 513, 1043, 1090, 1124 |
| AclWI | GGATC | 1 cut(s) | 1084 |
| AcoI | YGGCCR | 1 cut(s) | 1156 |
| AcsI | RAATTY | 4 cut(s) | 643, 699, 796, 1014 |
| AcuI | CTGAAG | 1 cut(s) | 1563 |
| AcyI | GRCGYC | 1 cut(s) | 329 |
| AfaI | GTAC | 2 cut(s) | 570, 1447 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 253, 615, 1049 |
| AgeI | ACCGGT | 1 cut(s) | 1151 |
| AgsI | TTSAA | 4 cut(s) | 290, 693, 1255, 1513 |
| AjiI | CACGTC | 1 cut(s) | 1324 |
| AjnI | CCWGG | 2 cut(s) | 863, 889 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1313, 1345 |
| Alw21I | GWGCWC | 4 cut(s) | 177, 390, 980, 1632 |
| Alw26I | GTCTC | 1 cut(s) | 1393 |
| Alw44I | GTGCAC | 1 cut(s) | 976 |
| AlwI | GGATC | 1 cut(s) | 1084 |
| AoxI | GGCC | 6 cut(s) | 139, 650, 861, 875, 1156, 1275 |
| ApaLI | GTGCAC | 1 cut(s) | 976 |
| ApeKI | GCWGC | 4 cut(s) | 403, 921, 1140, 1486 |
| ApoI | RAATTY | 4 cut(s) | 643, 699, 796, 1014 |
| AsiGI | ACCGGT | 1 cut(s) | 1151 |
| AspLEI | GCGC | 3 cut(s) | 259, 331, 916 |
| AspS9I | GGNCC | 2 cut(s) | 50, 876 |
| AsuC2I | CCSGG | 1 cut(s) | 1641 |
| AsuHPI | GGTGA | 8 cut(s) | 88, 128, 450, 456, 598, 1069, 1559, 1629 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| BaeGI | GKGCMC | 1 cut(s) | 980 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 560, 593 |
| BalI | TGGCCA | 1 cut(s) | 1158 |
| BanI | GGYRCC | 3 cut(s) | 328, 515, 1347 |
| BanII | GRGCYC | 1 cut(s) | 177 |
| BbsI | GAAGAC | 1 cut(s) | 825 |
| Bbv12I | GWGCWC | 4 cut(s) | 177, 390, 980, 1632 |
| BbvCI | CCTCAGC | 1 cut(s) | 447 |
| BbvI | GCAGC | 4 cut(s) | 390, 933, 1127, 1473 |
| BccI | CCATC | 5 cut(s) | 104, 238, 771, 1167, 1307 |
| BceAI | ACGGC | 3 cut(s) | 316, 342, 1191 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1002, 1036, 1254, 1288 |
| BciT130I | CCWGG | 2 cut(s) | 865, 891 |
| BclI | TGATCA | 1 cut(s) | 9 |
| BcnI | CCSGG | 1 cut(s) | 1641 |
| BcoDI | GTCTC | 1 cut(s) | 1393 |
| BfaI | CTAG | 9 cut(s) | 770, 789, 885, 938, 953, 1001, 1047, 1295, 1651 |
| BfoI | RGCGCY | 2 cut(s) | 260, 332 |
| BfuAI | ACCTGC | 1 cut(s) | 435 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 337 |
| BisI | GCNGC | 7 cut(s) | 404, 511, 514, 922, 1091, 1141, 1487 |
| BlsI | GCNGC | 7 cut(s) | 405, 512, 515, 923, 1092, 1142, 1488 |
| Bme1390I | CCNGG | 3 cut(s) | 865, 891, 1641 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmgBI | CACGTC | 1 cut(s) | 1324 |
| BmgT120I | GGNCC | 2 cut(s) | 50, 876 |
| BmiI | GGNNCC | 4 cut(s) | 330, 517, 1331, 1349 |
| BmrFI | CCNGG | 3 cut(s) | 865, 891, 1641 |
| BmsI | GCATC | 5 cut(s) | 367, 461, 646, 1123, 1575 |
| BpiI | GAAGAC | 1 cut(s) | 825 |
| BpmI | CTGGAG | 1 cut(s) | 1259 |
| Bpu10I | CCTNAGC | 3 cut(s) | 381, 447, 1530 |
| BpuMI | CCSGG | 1 cut(s) | 1641 |
| BsaBI | GATNNNNATC | 2 cut(s) | 8, 1339 |
| BsaHI | GRCGYC | 1 cut(s) | 329 |
| BsaJI | CCNNGG | 4 cut(s) | 613, 890, 931, 1490 |
| BsaWI | WCCGGW | 2 cut(s) | 466, 1151 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 253, 615, 1049 |
| Bse118I | RCCGGY | 2 cut(s) | 253, 1151 |
| Bse1I | ACTGG | 2 cut(s) | 420, 511 |
| Bse3DI | GCAATG | 2 cut(s) | 916, 925 |
| Bse8I | GATNNNNATC | 2 cut(s) | 8, 1339 |
| BseBI | CCWGG | 2 cut(s) | 865, 891 |
| BseDI | CCNNGG | 4 cut(s) | 613, 890, 931, 1490 |
| BseGI | GGATG | 3 cut(s) | 751, 1420, 1590 |
| BseJI | GATNNNNATC | 2 cut(s) | 8, 1339 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 253, 615, 1049 |
| BseMI | GCAATG | 2 cut(s) | 916, 925 |
| BseMII | CTCAG | 6 cut(s) | 309, 395, 438, 1204, 1460, 1544 |
| BseNI | ACTGG | 2 cut(s) | 420, 511 |
| BseRI | GAGGAG | 2 cut(s) | 266, 517 |
| BseSI | GKGCMC | 1 cut(s) | 980 |
| BseXI | GCAGC | 4 cut(s) | 390, 933, 1127, 1473 |
| Bsh1236I | CGCG | 1 cut(s) | 122 |
| BshFI | GGCC | 6 cut(s) | 141, 652, 863, 877, 1158, 1277 |
| BshNI | GGYRCC | 3 cut(s) | 328, 515, 1347 |
| BshTI | ACCGGT | 1 cut(s) | 1151 |
| BsiHKAI | GWGCWC | 4 cut(s) | 177, 390, 980, 1632 |
| BsiSI | CCGG | 5 cut(s) | 254, 431, 467, 1152, 1641 |
| BslFI | GGGAC | 1 cut(s) | 623 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 253, 615, 1049 |
| BsmAI | GTCTC | 1 cut(s) | 1393 |
| BsmFI | GGGAC | 1 cut(s) | 623 |
| BsnI | GGCC | 6 cut(s) | 141, 652, 863, 877, 1158, 1277 |
| Bsp1286I | GDGCHC | 4 cut(s) | 177, 390, 980, 1632 |
| Bsp1407I | TGTACA | 1 cut(s) | 1445 |
| Bsp143I | GATC | 5 cut(s) | 9, 78, 598, 1076, 1569 |
| Bsp19I | CCATGG | 1 cut(s) | 613 |
| BspACI | CCGC | 8 cut(s) | 71, 371, 392, 510, 513, 1043, 1090, 1124 |
| BspANI | GGCC | 6 cut(s) | 141, 652, 863, 877, 1158, 1277 |
| BspCNI | CTCAG | 6 cut(s) | 310, 394, 439, 1203, 1461, 1543 |
| BspFNI | CGCG | 1 cut(s) | 122 |
| BspLI | GGNNCC | 4 cut(s) | 330, 517, 1331, 1349 |
| BspMI | ACCTGC | 1 cut(s) | 435 |
| BspPI | GGATC | 1 cut(s) | 1084 |
| BspT107I | GGYRCC | 3 cut(s) | 328, 515, 1347 |
| BsrDI | GCAATG | 2 cut(s) | 916, 925 |
| BsrFI | RCCGGY | 2 cut(s) | 253, 1151 |
| BsrGI | TGTACA | 1 cut(s) | 1445 |
| BsrI | ACTGG | 2 cut(s) | 420, 511 |
| BssAI | RCCGGY | 2 cut(s) | 253, 1151 |
| BssECI | CCNNGG | 4 cut(s) | 613, 890, 931, 1490 |
| BssMI | GATC | 5 cut(s) | 9, 78, 598, 1076, 1569 |
| BssNAI | GTATAC | 1 cut(s) | 324 |
| BssNI | GRCGYC | 1 cut(s) | 329 |
| BssT1I | CCWWGG | 3 cut(s) | 613, 931, 1490 |
| Bst1107I | GTATAC | 1 cut(s) | 324 |
| Bst2UI | CCWGG | 2 cut(s) | 865, 891 |
| Bst4CI | ACNGT | 3 cut(s) | 462, 520, 823 |
| Bst6I | CTCTTC | 5 cut(s) | 198, 535, 608, 763, 1582 |
| BstACI | GRCGYC | 1 cut(s) | 329 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 927 |
| BstAUI | TGTACA | 1 cut(s) | 1445 |
| BstC8I | GCNNGC | 3 cut(s) | 102, 255, 408 |
| BstDEI | CTNAG | 7 cut(s) | 318, 381, 447, 1064, 1190, 1469, 1530 |
| BstDSI | CCRYGG | 1 cut(s) | 613 |
| BstF5I | GGATG | 3 cut(s) | 751, 1420, 1590 |
| BstFNI | CGCG | 1 cut(s) | 122 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 332 |
| BstHHI | GCGC | 3 cut(s) | 259, 331, 916 |
| BstKTI | GATC | 5 cut(s) | 12, 81, 601, 1079, 1572 |
| BstMAI | GTCTC | 1 cut(s) | 1393 |
| BstMBI | GATC | 5 cut(s) | 9, 78, 598, 1076, 1569 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 172, 337, 346, 377, 400, 927, 958 |
| BstNI | CCWGG | 2 cut(s) | 865, 891 |
| BstNSI | RCATGY | 4 cut(s) | 104, 410, 497, 1452 |
| BstSCI | CCNGG | 3 cut(s) | 863, 889, 1639 |
| BstSLI | GKGCMC | 1 cut(s) | 980 |
| BstUI | CGCG | 1 cut(s) | 122 |
| BstV1I | GCAGC | 4 cut(s) | 390, 933, 1127, 1473 |
| BstV2I | GAAGAC | 1 cut(s) | 825 |
| BstX2I | RGATCY | 1 cut(s) | 1076 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 932 |
| BstYI | RGATCY | 1 cut(s) | 1076 |
| BstZ17I | GTATAC | 1 cut(s) | 324 |
| BsuRI | GGCC | 6 cut(s) | 141, 652, 863, 877, 1158, 1277 |
| BtgI | CCRYGG | 1 cut(s) | 613 |
| BtgZI | GCGATG | 2 cut(s) | 330, 538 |
| BtrI | CACGTC | 1 cut(s) | 1324 |
| BtsCI | GGATG | 3 cut(s) | 751, 1420, 1590 |
| BtsIMutI | CAGTG | 3 cut(s) | 504, 819, 1198 |
| BveI | ACCTGC | 1 cut(s) | 435 |
| Cac8I | GCNNGC | 3 cut(s) | 102, 255, 408 |
| CfoI | GCGC | 3 cut(s) | 259, 331, 916 |
| Cfr10I | RCCGGY | 2 cut(s) | 253, 1151 |
| Cfr13I | GGNCC | 2 cut(s) | 50, 876 |
| CpoI | CGGWCCG | 1 cut(s) | 50 |
| CseI | GACGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 2 cut(s) | 569, 1446 |
| CspAI | ACCGGT | 1 cut(s) | 1151 |
| CspI | CGGWCCG | 1 cut(s) | 50 |
| CviAII | CATG | 9 cut(s) | 67, 101, 134, 407, 494, 614, 717, 1222, 1449 |
| CviQI | GTAC | 2 cut(s) | 569, 1446 |
| DdeI | CTNAG | 7 cut(s) | 318, 381, 447, 1064, 1190, 1469, 1530 |
| DinI | GGCGCC | 1 cut(s) | 330 |
| DpnI | GATC | 5 cut(s) | 11, 80, 600, 1078, 1571 |
| DpnII | GATC | 5 cut(s) | 9, 78, 598, 1076, 1569 |
| DraI | TTTAAA | 1 cut(s) | 1339 |
| EaeI | YGGCCR | 1 cut(s) | 1156 |
| Eam1104I | CTCTTC | 5 cut(s) | 198, 535, 608, 763, 1582 |
| EarI | CTCTTC | 5 cut(s) | 198, 535, 608, 763, 1582 |
| EciI | GGCGGA | 1 cut(s) | 1113 |
| Ecl136II | GAGCTC | 1 cut(s) | 175 |
| Eco130I | CCWWGG | 3 cut(s) | 613, 931, 1490 |
| Eco147I | AGGCCT | 2 cut(s) | 141, 652 |
| Eco24I | GRGCYC | 1 cut(s) | 177 |
| Eco32I | GATATC | 1 cut(s) | 46 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| Eco53kI | GAGCTC | 1 cut(s) | 175 |
| Eco57I | CTGAAG | 1 cut(s) | 1563 |
| EcoICRI | GAGCTC | 1 cut(s) | 175 |
| EcoRII | CCWGG | 2 cut(s) | 863, 889 |
| EcoRV | GATATC | 1 cut(s) | 46 |
| EcoT14I | CCWWGG | 3 cut(s) | 613, 931, 1490 |
| EcoT38I | GRGCYC | 1 cut(s) | 177 |
| EgeI | GGCGCC | 1 cut(s) | 330 |
| EheI | GGCGCC | 1 cut(s) | 330 |
| ErhI | CCWWGG | 3 cut(s) | 613, 931, 1490 |
| FaeI | CATG | 9 cut(s) | 70, 104, 137, 410, 497, 617, 720, 1225, 1452 |
| FaqI | GGGAC | 1 cut(s) | 623 |
| FatI | CATG | 9 cut(s) | 66, 100, 133, 406, 493, 613, 716, 1221, 1448 |
| FauI | CCCGC | 1 cut(s) | 399 |
| FbaI | TGATCA | 1 cut(s) | 9 |
| FblI | GTMKAC | 1 cut(s) | 323 |
| Fnu4HI | GCNGC | 7 cut(s) | 404, 511, 514, 922, 1091, 1141, 1487 |
| FokI | GGATG | 3 cut(s) | 738, 1407, 1597 |
| FriOI | GRGCYC | 1 cut(s) | 177 |
| Fsp4HI | GCNGC | 7 cut(s) | 404, 511, 514, 922, 1091, 1141, 1487 |
| FspBI | CTAG | 9 cut(s) | 770, 789, 885, 938, 953, 1001, 1047, 1295, 1651 |
| GlaI | GCGC | 3 cut(s) | 258, 330, 915 |
| GluI | GCNGC | 7 cut(s) | 404, 511, 514, 922, 1091, 1141, 1487 |
| GsuI | CTGGAG | 1 cut(s) | 1259 |
| HaeII | RGCGCY | 2 cut(s) | 260, 332 |
| HaeIII | GGCC | 6 cut(s) | 141, 652, 863, 877, 1158, 1277 |
| HapII | CCGG | 5 cut(s) | 254, 431, 467, 1152, 1641 |
| HgaI | GACGC | 1 cut(s) | 128 |
| HhaI | GCGC | 3 cut(s) | 259, 331, 916 |
| Hin1I | GRCGYC | 1 cut(s) | 329 |
| Hin1II | CATG | 9 cut(s) | 70, 104, 137, 410, 497, 617, 720, 1225, 1452 |
| Hin6I | GCGC | 3 cut(s) | 257, 329, 914 |
| HinP1I | GCGC | 3 cut(s) | 257, 329, 914 |
| HindIII | AAGCTT | 2 cut(s) | 126, 474 |
| HinfI | GANTC | 5 cut(s) | 501, 588, 766, 868, 1478 |
| HpaII | CCGG | 5 cut(s) | 254, 431, 467, 1152, 1641 |
| HphI | GGTGA | 8 cut(s) | 88, 128, 450, 456, 598, 1069, 1559, 1629 |
| Hpy166II | GTNNAC | 4 cut(s) | 324, 978, 1292, 1391 |
| Hpy188I | TCNGA | 9 cut(s) | 54, 417, 482, 776, 846, 1147, 1334, 1470, 1602 |
| Hpy188III | TCNNGA | 6 cut(s) | 156, 170, 734, 1001, 1238, 1532 |
| Hpy8I | GTNNAC | 4 cut(s) | 324, 978, 1292, 1391 |
| Hpy99I | CGWCG | 2 cut(s) | 58, 1133 |
| HpyAV | CCTTC | 6 cut(s) | 153, 497, 935, 1195, 1531, 1556 |
| HpyCH4III | ACNGT | 3 cut(s) | 462, 520, 823 |
| HpyCH4IV | ACGT | 4 cut(s) | 56, 830, 1323, 1393 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 172, 337, 346, 377, 400, 927, 958 |
| HpyF3I | CTNAG | 7 cut(s) | 318, 381, 447, 1064, 1190, 1469, 1530 |
| HpySE526I | ACGT | 4 cut(s) | 56, 830, 1323, 1393 |
| Hsp92I | GRCGYC | 1 cut(s) | 329 |
| Hsp92II | CATG | 9 cut(s) | 70, 104, 137, 410, 497, 617, 720, 1225, 1452 |
| HspAI | GCGC | 3 cut(s) | 257, 329, 914 |
| KasI | GGCGCC | 1 cut(s) | 328 |
| KroI | GCCGGC | 1 cut(s) | 253 |
| KroNI | GCCGGC | 1 cut(s) | 255 |
| Ksp22I | TGATCA | 1 cut(s) | 9 |
| Kzo9I | GATC | 5 cut(s) | 9, 78, 598, 1076, 1569 |
| LmnI | GCTCC | 5 cut(s) | 393, 433, 542, 1148, 1627 |
| Lsp1109I | GCAGC | 4 cut(s) | 390, 933, 1127, 1473 |
| LweI | GCATC | 5 cut(s) | 367, 461, 646, 1123, 1575 |
| MaeI | CTAG | 9 cut(s) | 770, 789, 885, 938, 953, 1001, 1047, 1295, 1651 |
| MaeII | ACGT | 4 cut(s) | 56, 830, 1323, 1393 |
| MaeIII | GTNAC | 7 cut(s) | 116, 297, 422, 456, 462, 1038, 1455 |
| MalI | GATC | 5 cut(s) | 11, 80, 600, 1078, 1571 |
| MboI | GATC | 5 cut(s) | 9, 78, 598, 1076, 1569 |
| MflI | RGATCY | 1 cut(s) | 1076 |
| MhlI | GDGCHC | 4 cut(s) | 177, 390, 980, 1632 |
| MlsI | TGGCCA | 1 cut(s) | 1158 |
| MluCI | AATT | 7 cut(s) | 283, 643, 699, 796, 1014, 1255, 1603 |
| MluNI | TGGCCA | 1 cut(s) | 1158 |
| Mly113I | GGCGCC | 1 cut(s) | 329 |
| MlyI | GAGTC | 2 cut(s) | 597, 862 |
| MmeI | TCCRAC | 7 cut(s) | 77, 440, 505, 824, 1054, 1170, 1376 |
| Mox20I | TGGCCA | 1 cut(s) | 1158 |
| MreI | CGCCGGCG | 1 cut(s) | 253 |
| MroNI | GCCGGC | 1 cut(s) | 253 |
| MscI | TGGCCA | 1 cut(s) | 1158 |
| MseI | TTAA | 2 cut(s) | 708, 1338 |
| MslI | CAYNNNNRTG | 1 cut(s) | 71 |
| Msp20I | TGGCCA | 1 cut(s) | 1158 |
| MspA1I | CMGCKG | 2 cut(s) | 1090, 1486 |
| MspI | CCGG | 5 cut(s) | 254, 431, 467, 1152, 1641 |
| MspR9I | CCNGG | 3 cut(s) | 865, 891, 1641 |
| MvaI | CCWGG | 2 cut(s) | 865, 891 |
| MvnI | CGCG | 1 cut(s) | 122 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 172, 337, 346, 377, 400, 927, 958 |
| NaeI | GCCGGC | 1 cut(s) | 255 |
| NarI | GGCGCC | 1 cut(s) | 329 |
| NciI | CCSGG | 1 cut(s) | 1641 |
| NcoI | CCATGG | 1 cut(s) | 613 |
| NdeII | GATC | 5 cut(s) | 9, 78, 598, 1076, 1569 |
| NgoMIV | GCCGGC | 1 cut(s) | 253 |
| NlaIII | CATG | 9 cut(s) | 70, 104, 137, 410, 497, 617, 720, 1225, 1452 |
| NlaIV | GGNNCC | 4 cut(s) | 330, 517, 1331, 1349 |
| NmeAIII | GCCGAG | 1 cut(s) | 1253 |
| NmuCI | GTSAC | 3 cut(s) | 116, 456, 462 |
| NspI | RCATGY | 4 cut(s) | 104, 410, 497, 1452 |
| PaeI | GCATGC | 2 cut(s) | 104, 410 |
| PceI | AGGCCT | 2 cut(s) | 141, 652 |
| PdiI | GCCGGC | 1 cut(s) | 255 |
| PfeI | GAWTC | 3 cut(s) | 501, 766, 1478 |
| PinAI | ACCGGT | 1 cut(s) | 1151 |
| PkrI | GCNGC | 7 cut(s) | 405, 512, 515, 923, 1092, 1142, 1488 |
| PleI | GAGTC | 2 cut(s) | 596, 862 |
| PluTI | GGCGCC | 1 cut(s) | 332 |
| PpsI | GAGTC | 2 cut(s) | 596, 862 |
| Psp124BI | GAGCTC | 1 cut(s) | 177 |
| Psp6I | CCWGG | 2 cut(s) | 863, 889 |
| PspGI | CCWGG | 2 cut(s) | 863, 889 |
| PspN4I | GGNNCC | 4 cut(s) | 330, 517, 1331, 1349 |
| PspPI | GGNCC | 2 cut(s) | 50, 876 |
| PsuI | RGATCY | 1 cut(s) | 1076 |
| PvuII | CAGCTG | 1 cut(s) | 1486 |
| RsaI | GTAC | 2 cut(s) | 570, 1447 |
| RsaNI | GTAC | 2 cut(s) | 569, 1446 |
| RseI | CAYNNNNRTG | 1 cut(s) | 71 |
| Rsr2I | CGGWCCG | 1 cut(s) | 50 |
| RsrII | CGGWCCG | 1 cut(s) | 50 |
| SacI | GAGCTC | 1 cut(s) | 177 |
| SaqAI | TTAA | 2 cut(s) | 708, 1338 |
| SatI | GCNGC | 7 cut(s) | 404, 511, 514, 922, 1091, 1141, 1487 |
| Sau3AI | GATC | 5 cut(s) | 9, 78, 598, 1076, 1569 |
| Sau96I | GGNCC | 2 cut(s) | 50, 876 |
| SchI | GAGTC | 2 cut(s) | 597, 862 |
| ScrFI | CCNGG | 3 cut(s) | 865, 891, 1641 |
| SduI | GDGCHC | 4 cut(s) | 177, 390, 980, 1632 |
| SfaNI | GCATC | 5 cut(s) | 367, 461, 646, 1123, 1575 |
| SfoI | GGCGCC | 1 cut(s) | 330 |
| SgrAI | CRCCGGYG | 2 cut(s) | 253, 1151 |
| SinI | GGWCC | 1 cut(s) | 50 |
| SmiI | ATTTAAAT | 1 cut(s) | 1339 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 71 |
| SphI | GCATGC | 2 cut(s) | 104, 410 |
| Sse9I | AATT | 7 cut(s) | 283, 643, 699, 796, 1014, 1255, 1603 |
| SseBI | AGGCCT | 2 cut(s) | 141, 652 |
| SsiI | CCGC | 8 cut(s) | 71, 371, 392, 510, 513, 1043, 1090, 1124 |
| SspDI | GGCGCC | 1 cut(s) | 328 |
| SspMI | CTAG | 9 cut(s) | 770, 789, 885, 938, 953, 1001, 1047, 1295, 1651 |
| SstI | GAGCTC | 1 cut(s) | 177 |
| StuI | AGGCCT | 2 cut(s) | 141, 652 |
| StyD4I | CCNGG | 3 cut(s) | 863, 889, 1639 |
| StyI | CCWWGG | 3 cut(s) | 613, 931, 1490 |
| SwaI | ATTTAAAT | 1 cut(s) | 1339 |
| TaaI | ACNGT | 3 cut(s) | 462, 520, 823 |
| TaiI | ACGT | 4 cut(s) | 59, 833, 1326, 1396 |
| TaqI | TCGA | 3 cut(s) | 81, 1343, 1610 |
| TaqII | GACCGA | 1 cut(s) | 38 |
| TasI | AATT | 7 cut(s) | 283, 643, 699, 796, 1014, 1255, 1603 |
| TatI | WGTACW | 1 cut(s) | 1445 |
| TauI | GCSGC | 3 cut(s) | 513, 516, 1093 |
| TfiI | GAWTC | 3 cut(s) | 501, 766, 1478 |
| Tru1I | TTAA | 2 cut(s) | 708, 1338 |
| Tru9I | TTAA | 2 cut(s) | 708, 1338 |
| TscAI | CASTG | 3 cut(s) | 511, 826, 1198 |
| TseFI | GTSAC | 3 cut(s) | 116, 456, 462 |
| TseI | GCWGC | 4 cut(s) | 403, 921, 1140, 1486 |
| Tsp45I | GTSAC | 3 cut(s) | 116, 456, 462 |
| TspDTI | ATGAA | 4 cut(s) | 36, 50, 705, 1238 |
| TspRI | CASTG | 3 cut(s) | 511, 826, 1198 |
| VneI | GTGCAC | 1 cut(s) | 976 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| XapI | RAATTY | 4 cut(s) | 643, 699, 796, 1014 |
| XbaI | TCTAGA | 1 cut(s) | 1000 |
| XceI | RCATGY | 4 cut(s) | 104, 410, 497, 1452 |
| XmiI | GTMKAC | 1 cut(s) | 323 |
| XspI | CTAG | 9 cut(s) | 770, 789, 885, 938, 953, 1001, 1047, 1295, 1651 |