Rh3DG264300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017799
Physical Location & Seq
Reverse (-)
26292591 .. 26294641
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG264300.1

Sequence Viewer

Length: 369 bp
ATGGCGCCGTTTCGGCTCACATCGCCATATACTTCTGCGGTTGTGGCGGTAGATGCTCAGGTGCTCCCGCCACTCTCGCTGCATGCTTCTCCGACCAGTAACCTGCCGGAGCTGAAATCTGCTGAGGCATCGTCACCGTCACCGGAGGAAGCTTTCCGACACTTTCTGCATGTAGGAATCACTGGCGGCGGCACCGTAGCCTCCTCTTCCTGCTCCAATGAGGATTGTATTGGGTATCATCCCTCTTCGCCGAATCTAGTCAGATGGTGTTCCTCTAGTGCAAATTTTGTTTGTAGTGGTGCTATCACTGTGGCAACGTCTTCTCTTGGTCGGATTGAGATTTGGGTGGCCTGGACTAGTTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.81

Weight (kDa)

5.68

Isoelectric Point (pI)

62.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AccB1I GGYRCC 2 cut(s) 4, 191
AciI CCGC 5 cut(s) 38, 47, 68, 186, 189
AcsI RAATTY 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 5
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 1 cut(s) 350
AluBI AGCT 2 cut(s) 112, 152
AluI AGCT 2 cut(s) 112, 152
Alw21I GWGCWC 1 cut(s) 66
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 283
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 126, 132
BanI GGYRCC 2 cut(s) 4, 191
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 66
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 66
BccI CCATC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 352
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 3 cut(s) 257, 276, 357
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 111
BglI GCCNNNNNGGC 1 cut(s) 13
BisI GCNGC 3 cut(s) 80, 187, 190
BlsI GCNGC 3 cut(s) 81, 188, 191
Bme1390I CCNGG 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 6, 193
BmrFI CCNGG 1 cut(s) 352
BmsI GCATC 2 cut(s) 43, 137
BpiI GAAGAC 1 cut(s) 312
Bpu10I CCTNAGC 2 cut(s) 57, 123
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 142
Bse1I ACTGG 2 cut(s) 96, 187
BseBI CCWGG 1 cut(s) 352
BseGI GGATG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 71, 114
BseNI ACTGG 2 cut(s) 96, 187
BseRI GAGGAG 1 cut(s) 193
BseXI GCAGC 1 cut(s) 66
BshFI GGCC 1 cut(s) 350
BshNI GGYRCC 2 cut(s) 4, 191
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 107, 143
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 66
BspACI CCGC 5 cut(s) 38, 47, 68, 186, 189
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 70, 115
BspLI GGNNCC 2 cut(s) 6, 193
BspMI ACCTGC 1 cut(s) 111
BspT107I GGYRCC 2 cut(s) 4, 191
BsrI ACTGG 2 cut(s) 96, 187
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 352
Bst4CI ACNGT 3 cut(s) 138, 196, 310
Bst6I CTCTTC 2 cut(s) 211, 250
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 2 cut(s) 57, 123
BstF5I GGATG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 5 cut(s) 13, 22, 44, 53, 76
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 2 cut(s) 86, 173
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 350
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 180, 306
BveI ACCTGC 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 84
CfoI GCGC 1 cut(s) 7
CviAII CATG 2 cut(s) 83, 170
CviJI RGCY 5 cut(s) 16, 112, 152, 200, 350
CviKI_1 RGCY 5 cut(s) 16, 112, 152, 200, 350
DdeI CTNAG 2 cut(s) 57, 123
DinI GGCGCC 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 211, 250
EarI CTCTTC 2 cut(s) 211, 250
EcoRII CCWGG 1 cut(s) 350
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 86, 173
FaiI YATR 4 cut(s) 28, 30, 84, 171
FatI CATG 2 cut(s) 82, 169
FauI CCCGC 1 cut(s) 75
Fnu4HI GCNGC 3 cut(s) 80, 187, 190
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 3 cut(s) 80, 187, 190
FspBI CTAG 3 cut(s) 257, 276, 357
GlaI GCGC 1 cut(s) 6
GluI GCNGC 3 cut(s) 80, 187, 190
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 350
HapII CCGG 2 cut(s) 107, 143
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 86, 173
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 2 cut(s) 177, 253
HpaII CCGG 2 cut(s) 107, 143
HphI GGTGA 2 cut(s) 126, 132
Hpy188I TCNGA 4 cut(s) 93, 158, 263, 333
HpyCH4III ACNGT 3 cut(s) 138, 196, 310
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 3 cut(s) 82, 169, 281
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 22, 44, 53, 76
HpyF3I CTNAG 2 cut(s) 57, 123
HpySE526I ACGT 1 cut(s) 317
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 86, 173
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
LmnI GCTCC 3 cut(s) 69, 109, 218
LpnPI CCDG 9 cut(s) 44, 109, 116, 120, 156, 168, 223, 337, 364
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 2 cut(s) 43, 137
MaeI CTAG 3 cut(s) 257, 276, 357
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 3 cut(s) 98, 132, 138
MboII GAAGA 3 cut(s) 198, 237, 312
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 283
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 116, 181, 311
MnlI CCTC 7 cut(s) 118, 139, 211, 214, 214, 253, 283
MspI CCGG 2 cut(s) 107, 143
MspR9I CCNGG 1 cut(s) 352
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 5 cut(s) 13, 22, 44, 53, 76
NarI GGCGCC 1 cut(s) 5
NlaIII CATG 2 cut(s) 86, 173
NlaIV GGNNCC 2 cut(s) 6, 193
NmuCI GTSAC 2 cut(s) 132, 138
NspI RCATGY 2 cut(s) 86, 173
PaeI GCATGC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 177, 253
PkrI GCNGC 3 cut(s) 81, 188, 191
PluTI GGCGCC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 2 cut(s) 6, 193
SatI GCNGC 3 cut(s) 80, 187, 190
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 66
SetI ASST 5 cut(s) 63, 105, 114, 154, 320
SfaNI GCATC 2 cut(s) 43, 137
SfoI GGCGCC 1 cut(s) 6
SpeI ACTAGT 1 cut(s) 356
SphI GCATGC 1 cut(s) 86
Sse9I AATT 1 cut(s) 283
SsiI CCGC 5 cut(s) 38, 47, 68, 186, 189
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 3 cut(s) 257, 276, 357
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 3 cut(s) 138, 196, 310
TaiI ACGT 1 cut(s) 320
TasI AATT 1 cut(s) 283
TauI GCSGC 2 cut(s) 189, 192
TfiI GAWTC 2 cut(s) 177, 253
TscAI CASTG 2 cut(s) 187, 313
TseFI GTSAC 2 cut(s) 132, 138
TseI GCWGC 1 cut(s) 79
Tsp45I GTSAC 2 cut(s) 132, 138
TspRI CASTG 2 cut(s) 187, 313
XapI RAATTY 1 cut(s) 283
XceI RCATGY 2 cut(s) 86, 173
XspI CTAG 3 cut(s) 257, 276, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.