No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0478861 RchiOBHm_Chr6g0289461 |
| rosa_laevigata | RLG00000012297 RLG00000034839 |
| rosa_multiflora | Rmu_sc0004838.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00166750 Rroxscaffold_7G00177950 |
| rosa_samantha | Rh3AG220300 Rh3DG264300 Rh6BG266800 Rh6CG328500 Rh6DG259500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 56 |
| AcyI | GRCGYC | 1 cut(s) | 125 |
| AgsI | TTSAA | 1 cut(s) | 37 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 124 |
| Alw21I | GWGCWC | 1 cut(s) | 102 |
| Alw44I | GTGCAC | 1 cut(s) | 98 |
| ApaLI | GTGCAC | 1 cut(s) | 98 |
| AspS9I | GGNCC | 1 cut(s) | 50 |
| AsuHPI | GGTGA | 2 cut(s) | 88, 128 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| BaeGI | GKGCMC | 1 cut(s) | 102 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 9, 41 |
| Bbv12I | GWGCWC | 1 cut(s) | 102 |
| BccI | CCATC | 1 cut(s) | 104 |
| BceAI | ACGGC | 1 cut(s) | 138 |
| BclI | TGATCA | 1 cut(s) | 9 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 124 |
| BmgT120I | GGNCC | 1 cut(s) | 50 |
| BmsI | GCATC | 1 cut(s) | 144 |
| BsaHI | GRCGYC | 1 cut(s) | 125 |
| Bse3DI | GCAATG | 1 cut(s) | 164 |
| BseGI | GGATG | 2 cut(s) | 49, 159 |
| BseMI | GCAATG | 1 cut(s) | 164 |
| BseSI | GKGCMC | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 1 cut(s) | 102 |
| Bsp1286I | GDGCHC | 1 cut(s) | 102 |
| Bsp143I | GATC | 1 cut(s) | 9 |
| BsrDI | GCAATG | 1 cut(s) | 164 |
| BssMI | GATC | 1 cut(s) | 9 |
| BssNI | GRCGYC | 1 cut(s) | 125 |
| BstACI | GRCGYC | 1 cut(s) | 125 |
| BstC8I | GCNNGC | 1 cut(s) | 102 |
| BstF5I | GGATG | 2 cut(s) | 49, 159 |
| BstKTI | GATC | 1 cut(s) | 12 |
| BstMBI | GATC | 1 cut(s) | 9 |
| BstNSI | RCATGY | 1 cut(s) | 68 |
| BstSLI | GKGCMC | 1 cut(s) | 102 |
| BtsCI | GGATG | 2 cut(s) | 49, 159 |
| BtsIMutI | CAGTG | 1 cut(s) | 144 |
| Cac8I | GCNNGC | 1 cut(s) | 102 |
| Cfr13I | GGNCC | 1 cut(s) | 50 |
| CseI | GACGC | 2 cut(s) | 13, 114 |
| CviAII | CATG | 1 cut(s) | 65 |
| CviJI | RGCY | 1 cut(s) | 147 |
| CviKI_1 | RGCY | 1 cut(s) | 147 |
| DpnI | GATC | 1 cut(s) | 11 |
| DpnII | GATC | 1 cut(s) | 9 |
| DriI | GACNNNNNGTC | 1 cut(s) | 124 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 124 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| FaeI | CATG | 1 cut(s) | 68 |
| FaiI | YATR | 1 cut(s) | 66 |
| FatI | CATG | 1 cut(s) | 64 |
| FbaI | TGATCA | 1 cut(s) | 9 |
| FokI | GGATG | 2 cut(s) | 56, 166 |
| HgaI | GACGC | 2 cut(s) | 13, 114 |
| Hin1I | GRCGYC | 1 cut(s) | 125 |
| Hin1II | CATG | 1 cut(s) | 68 |
| HincII | GTYRAC | 1 cut(s) | 129 |
| HindII | GTYRAC | 1 cut(s) | 129 |
| HinfI | GANTC | 1 cut(s) | 134 |
| HphI | GGTGA | 2 cut(s) | 88, 128 |
| Hpy166II | GTNNAC | 2 cut(s) | 100, 129 |
| Hpy8I | GTNNAC | 2 cut(s) | 100, 129 |
| HpyAV | CCTTC | 1 cut(s) | 144 |
| HpyCH4IV | ACGT | 1 cut(s) | 56 |
| HpyCH4V | TGCA | 4 cut(s) | 31, 100, 157, 162 |
| HpySE526I | ACGT | 1 cut(s) | 56 |
| Hsp92I | GRCGYC | 1 cut(s) | 125 |
| Hsp92II | CATG | 1 cut(s) | 68 |
| Ksp22I | TGATCA | 1 cut(s) | 9 |
| Kzo9I | GATC | 1 cut(s) | 9 |
| LweI | GCATC | 1 cut(s) | 144 |
| MaeII | ACGT | 1 cut(s) | 56 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MalI | GATC | 1 cut(s) | 11 |
| MboI | GATC | 1 cut(s) | 9 |
| MboII | GAAGA | 3 cut(s) | 29, 98, 101 |
| MfeI | CAATTG | 1 cut(s) | 32 |
| MhlI | GDGCHC | 1 cut(s) | 102 |
| MluCI | AATT | 1 cut(s) | 32 |
| MmeI | TCCRAC | 1 cut(s) | 77 |
| MnlI | CCTC | 5 cut(s) | 34, 54, 76, 107, 165 |
| MunI | CAATTG | 1 cut(s) | 32 |
| NdeII | GATC | 1 cut(s) | 9 |
| NlaIII | CATG | 1 cut(s) | 68 |
| NmuCI | GTSAC | 1 cut(s) | 116 |
| NspI | RCATGY | 1 cut(s) | 68 |
| PfeI | GAWTC | 1 cut(s) | 134 |
| Psp1406I | AACGTT | 1 cut(s) | 56 |
| PspPI | GGNCC | 1 cut(s) | 50 |
| Sau3AI | GATC | 1 cut(s) | 9 |
| Sau96I | GGNCC | 1 cut(s) | 50 |
| SduI | GDGCHC | 1 cut(s) | 102 |
| SetI | ASST | 3 cut(s) | 59, 118, 176 |
| SfaNI | GCATC | 1 cut(s) | 144 |
| SgeI | CNNG | 3 cut(s) | 77, 113, 133 |
| SinI | GGWCC | 1 cut(s) | 50 |
| Sse9I | AATT | 1 cut(s) | 32 |
| TaiI | ACGT | 1 cut(s) | 59 |
| TaqII | GACCGA | 1 cut(s) | 38 |
| TasI | AATT | 1 cut(s) | 32 |
| TfiI | GAWTC | 1 cut(s) | 134 |
| TscAI | CASTG | 1 cut(s) | 144 |
| TseFI | GTSAC | 1 cut(s) | 116 |
| Tsp45I | GTSAC | 1 cut(s) | 116 |
| TspDTI | ATGAA | 1 cut(s) | 36 |
| TspRI | CASTG | 1 cut(s) | 144 |
| VneI | GTGCAC | 1 cut(s) | 98 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| XceI | RCATGY | 1 cut(s) | 68 |