RLG00000034839

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017799
Physical Location & Seq
Forward (+)
55666288 .. 55670845
4558 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034839

Sequence Viewer

Length: 369 bp
ATGAATGAAGACTTGAAAGGATTACCAATTGGGAAGCTTACTAAGTTGAGCCATCGGTCAGATACGTATAAAGAAGTTTCCAAGTCATGGCCTGCTATGCTGAATGGGATGATGACATTGAAAGATGCTCAGGTGCTCCCGTCATTGTCCCCGAGAATCCGATGCTCACTACATGCTTCTCCGTCCAGTAACCTGCCGGAGCCGAAATCTACTGAGGCATCGTCACAGGAGGAAGCTTTCCGACACCTTCTGCATGTAGTAATCACCGGCGGCGGCACCGTAGCCTCCTCCTCCTGCTCTGATGAGGTTCGACATGCTTTTGGTGATCGGGTCTATAGGCCTCCGGCGGTGGTGGTAGGCTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.21

Weight (kDa)

8.66

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 275
AccB7I CCANNNNNTGG 1 cut(s) 87
AciI CCGC 3 cut(s) 270, 273, 347
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 2 cut(s) 16, 121
AluBI AGCT 2 cut(s) 37, 236
AluI AGCT 2 cut(s) 37, 236
Alw21I GWGCWC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 2 cut(s) 89, 338
AsuHPI GGTGA 2 cut(s) 256, 335
AvaI CYCGRG 1 cut(s) 151
BanI GGYRCC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 138
BccI CCATC 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 334
BfuAI ACCTGC 1 cut(s) 201
BisI GCNGC 2 cut(s) 271, 274
BlsI GCNGC 2 cut(s) 272, 275
BmeT110I CYCGRG 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 201, 277
BmsI GCATC 3 cut(s) 115, 152, 227
BpiI GAAGAC 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 129
BsaAI YACGTR 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 2 cut(s) 143, 204
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 277, 280
BshFI GGCC 2 cut(s) 91, 340
BshNI GGYRCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 3 cut(s) 197, 267, 344
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 2 cut(s) 91, 340
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 325
BspACI CCGC 3 cut(s) 270, 273, 347
BspANI GGCC 2 cut(s) 91, 340
BspCNI CTCAG 2 cut(s) 142, 205
BspLI GGNNCC 2 cut(s) 201, 277
BspMI ACCTGC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 266
BssMI GATC 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 280
BstBAI YACGTR 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 3 cut(s) 42, 129, 213
BstF5I GGATG 1 cut(s) 114
BstKTI GATC 1 cut(s) 328
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 3 cut(s) 176, 257, 317
BstSFI CTRYAG 1 cut(s) 334
BstSNI TACGTA 1 cut(s) 66
BstV2I GAAGAC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 91, 340
BtsCI GGATG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 266
CviAII CATG 4 cut(s) 87, 173, 254, 314
CviJI RGCY 8 cut(s) 37, 51, 91, 202, 236, 284, 340, 360
CviKI_1 RGCY 8 cut(s) 37, 51, 91, 202, 236, 284, 340, 360
DdeI CTNAG 3 cut(s) 42, 129, 213
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eco105I TACGTA 1 cut(s) 66
Eco147I AGGCCT 1 cut(s) 340
Eco88I CYCGRG 1 cut(s) 151
FaeI CATG 4 cut(s) 90, 176, 257, 317
FaiI YATR 7 cut(s) 69, 88, 98, 174, 255, 315, 336
FaqI GGGAC 1 cut(s) 133
FatI CATG 4 cut(s) 86, 172, 253, 313
Fnu4HI GCNGC 2 cut(s) 271, 274
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 271, 274
GluI GCNGC 2 cut(s) 271, 274
HaeIII GGCC 2 cut(s) 91, 340
HapII CCGG 3 cut(s) 197, 267, 344
Hin1II CATG 4 cut(s) 90, 176, 257, 317
HindIII AAGCTT 2 cut(s) 35, 234
HinfI GANTC 1 cut(s) 156
HpaII CCGG 3 cut(s) 197, 267, 344
HphI GGTGA 2 cut(s) 256, 335
Hpy188I TCNGA 4 cut(s) 61, 161, 242, 301
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 3 cut(s) 42, 129, 213
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 4 cut(s) 90, 176, 257, 317
Kzo9I GATC 1 cut(s) 325
LmnI GCTCC 2 cut(s) 141, 199
LpnPI CCDG 9 cut(s) 105, 116, 199, 206, 210, 212, 280, 307, 357
LweI GCATC 3 cut(s) 115, 152, 227
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 188, 222
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 7 cut(s) 208, 223, 295, 298, 298, 301, 351
MspI CCGG 3 cut(s) 197, 267, 344
MunI CAATTG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 1 cut(s) 325
NlaIII CATG 4 cut(s) 90, 176, 257, 317
NlaIV GGNNCC 2 cut(s) 201, 277
NmuCI GTSAC 1 cut(s) 222
NspI RCATGY 3 cut(s) 176, 257, 317
PceI AGGCCT 1 cut(s) 340
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 87
PkrI GCNGC 2 cut(s) 272, 275
Ppu21I YACGTR 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 201, 277
SatI GCNGC 2 cut(s) 271, 274
Sau3AI GATC 1 cut(s) 325
SduI GDGCHC 1 cut(s) 138
SetI ASST 7 cut(s) 39, 68, 135, 195, 238, 249, 309
SfaNI GCATC 3 cut(s) 115, 152, 227
SfcI CTRYAG 1 cut(s) 334
SgrAI CRCCGGYG 1 cut(s) 266
SnaBI TACGTA 1 cut(s) 66
Sse9I AATT 1 cut(s) 27
SseBI AGGCCT 1 cut(s) 340
SsiI CCGC 3 cut(s) 270, 273, 347
StuI AGGCCT 1 cut(s) 340
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 310
TaqII GACCGA 1 cut(s) 45
TasI AATT 1 cut(s) 27
TauI GCSGC 2 cut(s) 273, 276
TfiI GAWTC 1 cut(s) 156
TseFI GTSAC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 17, 21
TspGWI ACGGA 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 87
XceI RCATGY 3 cut(s) 176, 257, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.