RchiOBHm_Chr3g0487671

G3BP-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
34927417 .. 34929339
1923 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 171 bp
ATGATACCACTGGGTTTTCCTGCAACAGTGGCTAATTATATGATGAGTGGAGAAACTCATACTACAGACTACATGGTGCCTGATGTCAATGGAAATGGTCCAGTTGATAACTATGGCTATGAGAATATCATGGAGGATCCTGCGCAGAACTGTCTAACGGTTCATTTCTGA

Protein Analysis

56

Amino Acids

6.18

Weight (kDa)

4.05

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018170)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 76
AclWI GGATC 2 cut(s) 131, 144
AlwI GGATC 2 cut(s) 131, 144
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 98
BamHI GGATCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 76
BfmI CTRYAG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 78, 138
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 15, 101
BseNI ACTGG 2 cut(s) 15, 101
BshNI GGYRCC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 78, 138
BspPI GGATC 2 cut(s) 131, 144
BspT107I GGYRCC 1 cut(s) 76
BsrI ACTGG 2 cut(s) 15, 101
BssMI GATC 1 cut(s) 136
Bst4CI ACNGT 3 cut(s) 28, 152, 160
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 8, 33
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 98
CviAII CATG 2 cut(s) 73, 130
CviJI RGCY 2 cut(s) 32, 117
CviKI_1 RGCY 2 cut(s) 32, 117
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 98
FaeI CATG 2 cut(s) 76, 133
FaiI YATR 7 cut(s) 39, 41, 60, 74, 114, 120, 131
FatI CATG 2 cut(s) 72, 129
FspI TGCGCA 1 cut(s) 144
GlaI GCGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 76, 133
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 28, 152, 160
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 76, 133
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 4 cut(s) 33, 93, 114, 153
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MflI RGATCY 1 cut(s) 136
MluCI AATT 1 cut(s) 34
MnlI CCTC 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 1 cut(s) 136
NlaIII CATG 2 cut(s) 76, 133
NlaIV GGNNCC 2 cut(s) 78, 138
NsbI TGCGCA 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 78, 138
PspPI GGNCC 1 cut(s) 98
PsuI RGATCY 1 cut(s) 136
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 98
SfcI CTRYAG 1 cut(s) 63
SgeI CNNG 7 cut(s) 23, 32, 85, 92, 113, 142, 152
SinI GGWCC 1 cut(s) 98
Sse9I AATT 1 cut(s) 34
TaaI ACNGT 3 cut(s) 28, 152, 160
TasI AATT 1 cut(s) 34
TscAI CASTG 2 cut(s) 15, 33
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 2 cut(s) 15, 33
VpaK11BI GGWCC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.