Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0018170

Physical Location & Seq

Genomic Coordinates Reverse (-)

21778035 .. 21779321

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0235400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATGGCATGCTTTGACTTTTTATTATCAGAAAAGATCAGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTGTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAACCTTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGCGTTTCCTTCAAAAGATCAATTTGATGCAGCTGCGTTGTTATTTGGACCACACACACCAAGGGAGTATGTGCAGGGCTCGCAAGCCGAATGGCTGCATATGCAGTGTGAACCTGGTAGTATATCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

115

Amino Acids

12.98

Weight (kDa)

5.02

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	11 - 51	3.5e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487671 RchiOBHm_Chr4g0393081
rosa_laevigata	RLG00000006837 RLG00000022977 RLG00000035072
rosa_multiflora	Rmu_sc0017669.1_g000011
rosa_roxburghii	Rroxscaffold_1G00065430
rosa_rugosa	Rorug03G0235400
rosa_samantha	Rh3AG283700 Rh6DG132700
rosa_wichuraiana	Rw2G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	44
AgsI	TTSAA	5 cut(s)	169, 176, 189, 215, 228
AjnI	CCWGG	2 cut(s)	73, 328
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	139
ApeKI	GCWGC	4 cut(s)	142, 245, 248, 310
ApoI	RAATTY	1 cut(s)	54
AseI	ATTAAT	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	296
BbvI	GCAGC	4 cut(s)	154, 235, 257, 297
BciT130I	CCWGG	2 cut(s)	75, 330
BfmI	CTRYAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	148
BisI	GCNGC	4 cut(s)	143, 246, 249, 311
BlsI	GCNGC	4 cut(s)	144, 247, 250, 312
Bme1390I	CCNGG	2 cut(s)	75, 330
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	75, 330
BmsI	GCATC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	75, 330
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	3 cut(s)	54, 83, 129
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	4 cut(s)	154, 235, 257, 297
BsgI	GTGCAG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	36, 232
BspACI	CCGC	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	2 cut(s)	36, 232
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	2 cut(s)	75, 330
BstC8I	GCNNGC	3 cut(s)	10, 296, 300
BstF5I	GGATG	3 cut(s)	54, 83, 129
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	39, 235
BstMBI	GATC	2 cut(s)	36, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 295, 316
BstNI	CCWGG	2 cut(s)	75, 330
BstNSI	RCATGY	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	73, 328
BstSFI	CTRYAG	1 cut(s)	140
BstV1I	GCAGC	4 cut(s)	154, 235, 257, 297
BtsCI	GGATG	3 cut(s)	54, 83, 129
BtsI	GCAGTG	2 cut(s)	137, 326
BtsIMutI	CAGTG	2 cut(s)	137, 326
Cac8I	GCNNGC	3 cut(s)	10, 296, 300
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	263
CsiI	ACCWGGT	1 cut(s)	328
CviAII	CATG	2 cut(s)	9, 199
CviJI	RGCY	5 cut(s)	42, 248, 294, 302, 310
CviKI_1	RGCY	5 cut(s)	42, 248, 294, 302, 310
DpnI	GATC	2 cut(s)	38, 234
DpnII	GATC	2 cut(s)	36, 232
Eco130I	CCWWGG	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	73, 328
EcoT14I	CCWWGG	1 cut(s)	275
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	2 cut(s)	12, 202
FaiI	YATR	7 cut(s)	10, 200, 285, 315, 317, 338, 343
FatI	CATG	2 cut(s)	8, 198
FauI	CCCGC	1 cut(s)	214
FauNDI	CATATG	1 cut(s)	315
Fnu4HI	GCNGC	4 cut(s)	143, 246, 249, 311
FokI	GGATG	3 cut(s)	61, 90, 116
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	4 cut(s)	143, 246, 249, 311
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	4 cut(s)	143, 246, 249, 311
HaeII	RGCGCY	1 cut(s)	148
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	12, 202
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	202
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	196, 326
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	2 cut(s)	196, 326
HpyAV	CCTTC	1 cut(s)	234
HpyCH4V	TGCA	5 cut(s)	142, 245, 289, 313, 319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 295, 316
Hsp92II	CATG	2 cut(s)	12, 202
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	36, 232
LpnPI	CCDG	8 cut(s)	47, 56, 60, 87, 146, 275, 315, 342
Lsp1109I	GCAGC	4 cut(s)	154, 235, 257, 297
LweI	GCATC	1 cut(s)	232
MabI	ACCWGGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	2 cut(s)	38, 234
MboI	GATC	2 cut(s)	36, 232
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	4 cut(s)	54, 124, 184, 236
MnlI	CCTC	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	75, 330
MvaI	CCWGG	2 cut(s)	75, 330
MwoI	GCNNNNNNNGC	3 cut(s)	215, 295, 316
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	2 cut(s)	36, 232
NlaIII	CATG	2 cut(s)	12, 202
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	12
PaeI	GCATGC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	73
PkrI	GCNGC	4 cut(s)	144, 247, 250, 312
PshBI	ATTAAT	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	73, 328
PspGI	CCWGG	2 cut(s)	73, 328
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	248
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	4 cut(s)	143, 246, 249, 311
Sau3AI	GATC	2 cut(s)	36, 232
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	75, 330
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	4 cut(s)	90, 174, 250, 331
SexAI	ACCWGGT	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	140
SinI	GGWCC	1 cut(s)	263
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	4 cut(s)	54, 124, 184, 236
SsiI	CCGC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	73, 328
StyI	CCWWGG	1 cut(s)	275
TaqI	TCGA	1 cut(s)	153
TasI	AATT	4 cut(s)	54, 124, 184, 236
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	144, 326
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	4 cut(s)	142, 245, 248, 310
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	65, 215
TspRI	CASTG	2 cut(s)	144, 326
VpaK11BI	GGWCC	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	123
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	1 cut(s)	12
XmnI	GAANNNNTTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.