Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017669.1

Orthogroup ID

OG0018170

Physical Location & Seq

Genomic Coordinates Forward (+)

48682 .. 50265

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017669.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ctgagcagaggaacaagggacggggaagctttcagggaaatcatcagtccgggcaatctattaataagagaaggcttaaaagggttatatcggttcagagagatgacactgtcgtttaaacaagtcatgcttgaagatgatgatgaacaagttggggaaaattaccggaaaatcaaacaacaacaacaagaggatcagattatcaatactgaacttactgatgagcatgttcaaggtcttgaaaacactgcagtcactaagagactggtgcctgatgttaatggaaatggtccagttgacaactatggttatgcagagcaacagttgcagcaggttgtcaaacatgagaatgtcatggaggatcctgctacagaactgtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

127

Amino Acids

14.55

Weight (kDa)

4.62

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487671 RchiOBHm_Chr4g0393081
rosa_laevigata	RLG00000006837 RLG00000022977 RLG00000035072
rosa_multiflora	Rmu_sc0017669.1_g000011
rosa_roxburghii	Rroxscaffold_1G00065430
rosa_rugosa	Rorug03G0235400
rosa_samantha	Rh3AG283700 Rh6DG132700
rosa_wichuraiana	Rw2G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	268
AclWI	GGATC	3 cut(s)	201, 356, 369
AgsI	TTSAA	3 cut(s)	134, 233, 242
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	3 cut(s)	201, 356, 369
ApeKI	GCWGC	1 cut(s)	328
AseI	ATTAAT	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	290
AsuC2I	CCSGG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	290
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	256
BfmI	CTRYAG	2 cut(s)	249, 369
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	51
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	270, 363
BmrFI	CCNGG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	270, 293
BseNI	ACTGG	2 cut(s)	270, 293
BseXI	GCAGC	1 cut(s)	340
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	2 cut(s)	50, 166
BslFI	GGGAC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	193, 361
BspLI	GGNNCC	2 cut(s)	270, 363
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	3 cut(s)	201, 356, 369
BspT107I	GGYRCC	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	270, 293
BssMI	GATC	2 cut(s)	193, 361
Bst4CI	ACNGT	3 cut(s)	111, 324, 378
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	2, 258
BstKTI	GATC	2 cut(s)	196, 364
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	2 cut(s)	193, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	2 cut(s)	249, 369
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	107, 246
BveI	ACCTGC	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	290
CviAII	CATG	4 cut(s)	127, 227, 344, 355
CviJI	RGCY	2 cut(s)	29, 75
CviKI_1	RGCY	2 cut(s)	29, 75
DdeI	CTNAG	2 cut(s)	2, 258
DpnI	GATC	2 cut(s)	195, 363
DpnII	GATC	2 cut(s)	193, 361
DraI	TTTAAA	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	290
FaeI	CATG	4 cut(s)	130, 230, 347, 358
FaiI	YATR	7 cut(s)	88, 128, 228, 306, 312, 345, 356
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	4 cut(s)	126, 226, 343, 354
Fnu4HI	GCNGC	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	329
HapII	CCGG	2 cut(s)	50, 166
Hin1II	CATG	4 cut(s)	130, 230, 347, 358
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	27
HpaII	CCGG	2 cut(s)	50, 166
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	98, 198
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	3 cut(s)	111, 324, 378
HpyCH4V	TGCA	3 cut(s)	251, 314, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	2 cut(s)	2, 258
Hsp92II	CATG	4 cut(s)	130, 230, 347, 358
Kzo9I	GATC	2 cut(s)	193, 361
LpnPI	CCDG	8 cut(s)	19, 63, 179, 251, 285, 306, 317, 378
Lsp1109I	GCAGC	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	195, 363
MboI	GATC	2 cut(s)	193, 361
MboII	GAAGA	1 cut(s)	146
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	1 cut(s)	160
MnlI	CCTC	2 cut(s)	184, 352
MseI	TTAA	5 cut(s)	62, 77, 117, 279, 382
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	2 cut(s)	50, 166
MspR9I	CCNGG	1 cut(s)	51
MssI	GTTTAAAC	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	193, 361
NlaIII	CATG	4 cut(s)	130, 230, 347, 358
NlaIV	GGNNCC	2 cut(s)	270, 363
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	330
PmeI	GTTTAAAC	1 cut(s)	118
PshBI	ATTAAT	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	270, 363
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	62, 77, 117, 279, 382
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	2 cut(s)	193, 361
Sau96I	GGNCC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	3 cut(s)	31, 238, 336
SfcI	CTRYAG	2 cut(s)	249, 369
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	1 cut(s)	160
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	3 cut(s)	111, 324, 378
TasI	AATT	1 cut(s)	160
Tru1I	TTAA	5 cut(s)	62, 77, 117, 279, 382
Tru9I	TTAA	5 cut(s)	62, 77, 117, 279, 382
TscAI	CASTG	2 cut(s)	114, 253
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	114, 253
Tth111I	GACNNNGTC	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	290
VspI	ATTAAT	1 cut(s)	62
XceI	RCATGY	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.