Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018170

Physical Location & Seq

Genomic Coordinates Forward (+)

87103917 .. 87108444

Gene Structure 4528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGGAACGATCGGTCGTGGGGACGCCGCGTCGAGGTTTTCCGGCGGGTCGGGTTTCGTACGGGCCGGGGTGGCTTTGATCCGAGTCCGGGGGCGGCGGCGGGGCACGGCGACACGGAGGGAGGCTCGGCGTGAGGCGGCGATGCCGGGGAGCCGGGTCCGGGGCGGAGGAGGCCGTAGGGCGCCGATTAACCGGCGGCAGCGTGATGCACGGCGGGCTCCGAGGCTGGCTGGCGGTTCCGTCGCCCGGGAAGTCGATGCGGAAGGCCTCGATCCCCATAACGGTGGGGATATCGGCGCAGAGCGTCAAGGGGGTGATAGGTTGGCGATCGAGAAGCCGTTGCTGGAGGCGATGGCGGAGGACTTTGTGGACTGGCAAGTGGTCGGCGGCGAAGGGGAATTGGGTATACCTACCTTTAGATTGCTGCGTTTGATGTTTGCCTGCCTTGCTGACTTTAACTTGAACATTTGTCAGAGAGATCTGAGTGCCGATGAATTGAAGGAGGTGCAGACTAAGGGAATGCAGGACCCAGCGTCGTGTTATCCCGGCGTTGAGCTTCTAATGCAGAAAATACATTGTGAAATTTGGCGCGTAGAAGCTGGAATTCTAGCTGCAAAAATACATTGTGAAAGTTGGCGCGTAGATGCTGGAATTCTAGCTGCAGTTGATCAACAGAAAATACATTGTGAAATTTGGCGCGTAGATGCTGGAATTCTAGCTGCAATGGATCAACAGAGACTGGTGCCTGATGTGAATGGAAACAGTCCAGTTGACAACTGTGGCTATGTAGGGCAACAGTTGCAGCAGGTTGTCGAATATGAGAATATCATGGAGGATCCAGCTGCAGAGCTGACTTATAGTTTCAAGATGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

291

Amino Acids

31.84

Weight (kDa)

6.47

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487671 RchiOBHm_Chr4g0393081
rosa_laevigata	RLG00000006837 RLG00000022977 RLG00000035072
rosa_multiflora	Rmu_sc0017669.1_g000011
rosa_roxburghii	Rroxscaffold_1G00065430
rosa_rugosa	Rorug03G0235400
rosa_samantha	Rh3AG283700 Rh6DG132700
rosa_wichuraiana	Rw2G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	796
AccB1I	GGYRCC	2 cut(s)	181, 742
AccI	GTMKAC	1 cut(s)	406
AccII	CGCG	4 cut(s)	29, 591, 639, 699
AclWI	GGATC	5 cut(s)	73, 266, 735, 830, 843
AcsI	RAATTY	5 cut(s)	582, 603, 651, 690, 711
AcyI	GRCGYC	2 cut(s)	24, 182
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	5 cut(s)	33, 88, 160, 246, 281
AgsI	TTSAA	3 cut(s)	463, 499, 865
AhdI	GACNNNNNGTC	2 cut(s)	28, 532
AluBI	AGCT	7 cut(s)	556, 599, 611, 659, 719, 842, 850
AluI	AGCT	7 cut(s)	556, 599, 611, 659, 719, 842, 850
Alw26I	GTCTC	1 cut(s)	730
AlwI	GGATC	5 cut(s)	73, 266, 735, 830, 843
AlwNI	CAGNNNCTG	1 cut(s)	739
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	3 cut(s)	63, 172, 265
ApeKI	GCWGC	7 cut(s)	199, 424, 611, 659, 719, 802, 842
ApoI	RAATTY	5 cut(s)	582, 603, 651, 690, 711
AspLEI	GCGC	5 cut(s)	184, 299, 591, 639, 699
AspS9I	GGNCC	3 cut(s)	63, 157, 526
AsuC2I	CCSGG	8 cut(s)	67, 89, 147, 155, 161, 247, 248, 546
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	2 cut(s)	157, 526
BaeGI	GKGCMC	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	835
BanI	GGYRCC	2 cut(s)	181, 742
BanII	GRGCYC	1 cut(s)	220
BbvI	GCAGC	7 cut(s)	211, 411, 598, 646, 706, 814, 829
BccI	CCATC	2 cut(s)	346, 862
BceAI	ACGGC	4 cut(s)	123, 159, 227, 322
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	8 cut(s)	67, 89, 147, 155, 161, 247, 248, 546
BcoDI	GTCTC	1 cut(s)	730
BfaI	CTAG	3 cut(s)	608, 656, 716
BfmI	CTRYAG	2 cut(s)	660, 843
BfoI	RGCGCY	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	796
BglI	GCCNNNNNGGC	1 cut(s)	71
BglII	AGATCT	1 cut(s)	478
Bme1390I	CCNGG	8 cut(s)	67, 89, 147, 155, 161, 247, 248, 546
Bme18I	GGWCC	2 cut(s)	157, 526
BmeRI	GACNNNNNGTC	2 cut(s)	28, 532
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	3 cut(s)	63, 157, 526
BmiI	GGNNCC	8 cut(s)	152, 158, 183, 219, 238, 528, 744, 837
BmrFI	CCNGG	8 cut(s)	67, 89, 147, 155, 161, 247, 248, 546
BmsI	GCATC	5 cut(s)	132, 196, 247, 634, 694
BplI	GAGNNNNNCTC	2 cut(s)	109, 141
BpmI	CTGGAG	1 cut(s)	365
BpuMI	CCSGG	8 cut(s)	67, 89, 147, 155, 161, 247, 248, 546
BsaHI	GRCGYC	2 cut(s)	24, 182
BsaJI	CCNNGG	6 cut(s)	66, 88, 146, 160, 221, 246
Bsc4I	CCNNNNNNNGG	5 cut(s)	33, 88, 160, 246, 281
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	3 cut(s)	377, 744, 767
Bse3DI	GCAATG	1 cut(s)	729
BseDI	CCNNGG	6 cut(s)	66, 88, 146, 160, 221, 246
BseLI	CCNNNNNNNGG	5 cut(s)	33, 88, 160, 246, 281
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	3 cut(s)	377, 744, 767
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	7 cut(s)	211, 411, 598, 646, 706, 814, 829
BseYI	CCCAGC	1 cut(s)	529
BsgI	GTGCAG	1 cut(s)	527
Bsh1236I	CGCG	4 cut(s)	29, 591, 639, 699
Bsh1285I	CGRYCG	3 cut(s)	12, 16, 330
BshFI	GGCC	3 cut(s)	65, 174, 267
BshNI	GGYRCC	2 cut(s)	181, 742
BsiEI	CGRYCG	3 cut(s)	12, 16, 330
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	9 cut(s)	42, 66, 88, 146, 154, 160, 193, 247, 546
BsiWI	CGTACG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	5 cut(s)	33, 88, 160, 246, 281
BsmAI	GTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	3 cut(s)	65, 174, 267
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	107, 220
Bsp143I	GATC	8 cut(s)	9, 78, 271, 327, 478, 667, 727, 835
BspANI	GGCC	3 cut(s)	65, 174, 267
BspCNI	CTCAG	1 cut(s)	474
BspFNI	CGCG	4 cut(s)	29, 591, 639, 699
BspLI	GGNNCC	8 cut(s)	152, 158, 183, 219, 238, 528, 744, 837
BspMAI	CTGCAG	2 cut(s)	664, 847
BspMI	ACCTGC	1 cut(s)	796
BspPI	GGATC	5 cut(s)	73, 266, 735, 830, 843
BspT107I	GGYRCC	2 cut(s)	181, 742
BsrDI	GCAATG	1 cut(s)	729
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	3 cut(s)	377, 744, 767
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	6 cut(s)	66, 88, 146, 160, 221, 246
BssMI	GATC	8 cut(s)	9, 78, 271, 327, 478, 667, 727, 835
BssNAI	GTATAC	1 cut(s)	407
BssNI	GRCGYC	2 cut(s)	24, 182
Bst1107I	GTATAC	1 cut(s)	407
Bst4CI	ACNGT	4 cut(s)	284, 764, 779, 798
BstACI	GRCGYC	2 cut(s)	24, 182
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstC8I	GCNNGC	4 cut(s)	216, 228, 232, 442
BstDEI	CTNAG	2 cut(s)	482, 513
BstFNI	CGCG	4 cut(s)	29, 591, 639, 699
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	5 cut(s)	184, 299, 591, 639, 699
BstKTI	GATC	8 cut(s)	12, 81, 274, 330, 481, 670, 730, 838
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	8 cut(s)	9, 78, 271, 327, 478, 667, 727, 835
BstMCI	CGRYCG	3 cut(s)	12, 16, 330
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 171, 215, 446, 562, 799
BstSCI	CCNGG	8 cut(s)	65, 87, 145, 153, 159, 245, 246, 544
BstSFI	CTRYAG	2 cut(s)	660, 843
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	4 cut(s)	29, 591, 639, 699
BstV1I	GCAGC	7 cut(s)	211, 411, 598, 646, 706, 814, 829
BstX2I	RGATCY	2 cut(s)	478, 835
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	2 cut(s)	478, 835
BstZ17I	GTATAC	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	65, 174, 267
BtgZI	GCGATG	2 cut(s)	155, 365
BveI	ACCTGC	1 cut(s)	796
Cac8I	GCNNGC	4 cut(s)	216, 228, 232, 442
CaiI	CAGNNNCTG	1 cut(s)	739
CfoI	GCGC	5 cut(s)	184, 299, 591, 639, 699
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	63, 157, 526
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	4 cut(s)	18, 32, 293, 522
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	1 cut(s)	829
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	482, 513
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	8 cut(s)	11, 80, 273, 329, 480, 669, 729, 837
DpnII	GATC	8 cut(s)	9, 78, 271, 327, 478, 667, 727, 835
DriI	GACNNNNNGTC	2 cut(s)	28, 532
Eam1105I	GACNNNNNGTC	2 cut(s)	28, 532
EciI	GGCGGA	2 cut(s)	180, 371
Eco147I	AGGCCT	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	2 cut(s)	157, 526
Eco88I	CYCGRG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRI	GAATTC	3 cut(s)	603, 651, 711
EcoRV	GATATC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	220
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
FaeI	CATG	1 cut(s)	832
FaiI	YATR	6 cut(s)	279, 407, 786, 819, 830, 858
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	828
FauI	CCCGC	3 cut(s)	38, 93, 207
FbaI	TGATCA	1 cut(s)	667
FblI	GTMKAC	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	220
FspBI	CTAG	3 cut(s)	608, 656, 716
GlaI	GCGC	5 cut(s)	183, 298, 590, 638, 698
GsaI	CCCAGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	3 cut(s)	65, 174, 267
HapII	CCGG	9 cut(s)	42, 66, 88, 146, 154, 160, 193, 247, 546
HgaI	GACGC	4 cut(s)	18, 32, 293, 522
HhaI	GCGC	5 cut(s)	184, 299, 591, 639, 699
Hin1I	GRCGYC	2 cut(s)	24, 182
Hin1II	CATG	1 cut(s)	832
Hin6I	GCGC	5 cut(s)	182, 297, 589, 637, 697
HinP1I	GCGC	5 cut(s)	182, 297, 589, 637, 697
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	9 cut(s)	42, 66, 88, 146, 154, 160, 193, 247, 546
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	3 cut(s)	370, 407, 772
Hpy188I	TCNGA	4 cut(s)	83, 222, 474, 483
Hpy188III	TCNNGA	2 cut(s)	331, 865
Hpy8I	GTNNAC	3 cut(s)	370, 407, 772
Hpy99I	CGWCG	3 cut(s)	34, 245, 538
HpyAV	CCTTC	3 cut(s)	257, 386, 493
HpyCH4III	ACNGT	4 cut(s)	284, 764, 779, 798
HpyCH4V	TGCA	9 cut(s)	209, 508, 523, 565, 614, 662, 722, 802, 845
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 171, 215, 446, 562, 799
HpyF3I	CTNAG	2 cut(s)	482, 513
Hsp92I	GRCGYC	2 cut(s)	24, 182
Hsp92II	CATG	1 cut(s)	832
HspAI	GCGC	5 cut(s)	182, 297, 589, 637, 697
KasI	GGCGCC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	8 cut(s)	9, 78, 271, 327, 478, 667, 727, 835
LmnI	GCTCC	2 cut(s)	150, 223
Lsp1109I	GCAGC	7 cut(s)	211, 411, 598, 646, 706, 814, 829
LweI	GCATC	5 cut(s)	132, 196, 247, 634, 694
MaeI	CTAG	3 cut(s)	608, 656, 716
MalI	GATC	8 cut(s)	11, 80, 273, 329, 480, 669, 729, 837
MboI	GATC	8 cut(s)	9, 78, 271, 327, 478, 667, 727, 835
MflI	RGATCY	2 cut(s)	478, 835
MhlI	GDGCHC	2 cut(s)	107, 220
MluCI	AATT	7 cut(s)	398, 494, 582, 603, 651, 690, 711
Mly113I	GGCGCC	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	93
MseI	TTAA	2 cut(s)	189, 456
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	842
MspI	CCGG	9 cut(s)	42, 66, 88, 146, 154, 160, 193, 247, 546
MspR9I	CCNGG	8 cut(s)	67, 89, 147, 155, 161, 247, 248, 546
Mva1269I	GAATGC	1 cut(s)	525
MvnI	CGCG	4 cut(s)	29, 591, 639, 699
MwoI	GCNNNNNNNGC	6 cut(s)	71, 171, 215, 446, 562, 799
NarI	GGCGCC	1 cut(s)	182
NciI	CCSGG	8 cut(s)	67, 89, 147, 155, 161, 247, 248, 546
NdeII	GATC	8 cut(s)	9, 78, 271, 327, 478, 667, 727, 835
NlaIII	CATG	1 cut(s)	832
NlaIV	GGNNCC	8 cut(s)	152, 158, 183, 219, 238, 528, 744, 837
NmeAIII	GCCGAG	1 cut(s)	106
PceI	AGGCCT	1 cut(s)	267
PctI	GAATGC	1 cut(s)	525
Pfl23II	CGTACG	1 cut(s)	58
Ple19I	CGATCG	2 cut(s)	12, 330
PleI	GAGTC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	92
PpuMI	RGGWCCY	1 cut(s)	526
Psp5II	RGGWCCY	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	529
PspLI	CGTACG	1 cut(s)	58
PspN4I	GGNNCC	8 cut(s)	152, 158, 183, 219, 238, 528, 744, 837
PspPI	GGNCC	3 cut(s)	63, 157, 526
PspPPI	RGGWCCY	1 cut(s)	526
PstI	CTGCAG	2 cut(s)	664, 847
PstNI	CAGNNNCTG	1 cut(s)	739
PsuI	RGATCY	2 cut(s)	478, 835
PvuI	CGATCG	2 cut(s)	12, 330
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	189, 456
Sau3AI	GATC	8 cut(s)	9, 78, 271, 327, 478, 667, 727, 835
Sau96I	GGNCC	3 cut(s)	63, 157, 526
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	8 cut(s)	67, 89, 147, 155, 161, 247, 248, 546
SduI	GDGCHC	2 cut(s)	107, 220
SfaNI	GCATC	5 cut(s)	132, 196, 247, 634, 694
SfcI	CTRYAG	2 cut(s)	660, 843
SfoI	GGCGCC	1 cut(s)	183
SinI	GGWCC	2 cut(s)	157, 526
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	7 cut(s)	398, 494, 582, 603, 651, 690, 711
SseBI	AGGCCT	1 cut(s)	267
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	3 cut(s)	608, 656, 716
StuI	AGGCCT	1 cut(s)	267
StyD4I	CCNGG	8 cut(s)	65, 87, 145, 153, 159, 245, 246, 544
TaaI	ACNGT	4 cut(s)	284, 764, 779, 798
TaqI	TCGA	5 cut(s)	32, 255, 270, 330, 813
TasI	AATT	7 cut(s)	398, 494, 582, 603, 651, 690, 711
TauI	GCSGC	6 cut(s)	29, 97, 100, 140, 199, 390
Tru1I	TTAA	2 cut(s)	189, 456
Tru9I	TTAA	2 cut(s)	189, 456
TseI	GCWGC	7 cut(s)	199, 424, 611, 659, 719, 802, 842
TspDTI	ATGAA	1 cut(s)	507
TspGWI	ACGGA	2 cut(s)	130, 229
TspMI	CCCGGG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	157, 526
XapI	RAATTY	5 cut(s)	582, 603, 651, 690, 711
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	406
XspI	CTAG	3 cut(s)	608, 656, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.