RLG00000006837

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018170
Physical Location & Seq
Reverse (-)
10941868 .. 10944118
2251 bp
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UTR
Exon/CDS
Intron
RLM00000006837

Sequence Viewer

Length: 474 bp
ATGGAGAGTCCAAACCAGCTATTTGCACCTCTTTGTTCATTCGATCTGTTTTGGTTTTTTGATCAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGAGCAGAGGGATCTAGGTAATGTCAAGAGACATAGAGAGCCAAGAGAGCAGAGGAACAAGGGACGGGAAAGCTCTCAGGGAAATCGTCAACCTGGGCAGTCTATTATTAAGAGGAGGCTTAAAAGGGTCAAAGATCGGTTCAGAGAGATGACACTATGGTTTGAACAAGTCATGCTTGAAGATGATGATGAACGAGTTGGGGAAAATAAGAGGCCATGGTCAAGGTGCTGCGTGCAGTTACTTAGTCAAATTGGGGATTCTTGGATGATAAGTTTGCACAGCTATGGCTTCAAGATTCTGTGGTTGAGGTTGTTGCTCTGTTCTTTCAAGATTATGAGAAGCTTCTCGACAATATGGCCAGGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

19.27

Weight (kDa)

9.94

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018170)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487671 RchiOBHm_Chr4g0393081
rosa_laevigata RLG00000006837 RLG00000022977 RLG00000035072
rosa_multiflora Rmu_sc0017669.1_g000011
rosa_roxburghii Rroxscaffold_1G00065430
rosa_rugosa Rorug03G0235400
rosa_samantha Rh3AG283700 Rh6DG132700
rosa_wichuraiana Rw2G024260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 461
AgsI TTSAA 4 cut(s) 269, 284, 397, 433
AjnI CCWGG 2 cut(s) 196, 463
AluBI AGCT 4 cut(s) 19, 177, 387, 447
AluI AGCT 4 cut(s) 19, 177, 387, 447
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 123
AoxI GGCC 2 cut(s) 317, 461
ApeKI GCWGC 1 cut(s) 333
BalI TGGCCA 1 cut(s) 463
BanII GRGCYC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 320
BciT130I CCWGG 2 cut(s) 198, 465
BclI TGATCA 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 198, 465
BmrFI CCNGG 2 cut(s) 198, 465
BsaJI CCNNGG 3 cut(s) 197, 320, 464
BseBI CCWGG 2 cut(s) 198, 465
BseDI CCNNGG 3 cut(s) 197, 320, 464
BseGI GGATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 194
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 320
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 2 cut(s) 319, 463
BslFI GGGAC 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 2 cut(s) 319, 463
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 4 cut(s) 43, 61, 115, 238
Bsp19I CCATGG 1 cut(s) 320
BspANI GGCC 2 cut(s) 319, 463
BspCNI CTCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 123
BssECI CCNNGG 3 cut(s) 197, 320, 464
BssMI GATC 4 cut(s) 43, 61, 115, 238
BssT1I CCWWGG 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 198, 465
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 180, 347
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 375
BstKTI GATC 4 cut(s) 46, 64, 118, 241
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 4 cut(s) 43, 61, 115, 238
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstNI CCWGG 2 cut(s) 198, 465
BstSCI CCNGG 2 cut(s) 196, 463
BstV1I GCAGC 1 cut(s) 320
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 2 cut(s) 319, 463
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 338
CviAII CATG 2 cut(s) 277, 321
DdeI CTNAG 2 cut(s) 180, 347
DpnI GATC 4 cut(s) 45, 63, 117, 240
DpnII GATC 4 cut(s) 43, 61, 115, 238
EaeI YGGCCR 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 471
EcoRII CCWGG 2 cut(s) 196, 463
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 2 cut(s) 280, 324
FaiI YATR 7 cut(s) 138, 262, 278, 322, 390, 440, 460
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FaqI GGGAC 1 cut(s) 180
FatI CATG 2 cut(s) 276, 320
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 1 cut(s) 382
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 334
HaeIII GGCC 2 cut(s) 319, 463
Hin1II CATG 2 cut(s) 280, 324
HincII GTYRAC 1 cut(s) 194
HindII GTYRAC 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 3 cut(s) 7, 362, 400
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 2 cut(s) 248, 473
Hpy188III TCNNGA 4 cut(s) 130, 397, 433, 451
Hpy8I GTNNAC 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 26, 340, 382
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 2 cut(s) 180, 347
Hsp92II CATG 2 cut(s) 280, 324
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 4 cut(s) 43, 61, 115, 238
LpnPI CCDG 5 cut(s) 29, 167, 183, 210, 450
Lsp1109I GCAGC 1 cut(s) 320
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 342
MalI GATC 4 cut(s) 45, 63, 117, 240
MboI GATC 4 cut(s) 43, 61, 115, 238
MboII GAAGA 2 cut(s) 114, 296
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 471
MlsI TGGCCA 1 cut(s) 463
MluCI AATT 1 cut(s) 354
MluNI TGGCCA 1 cut(s) 463
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 7 cut(s) 39, 105, 150, 210, 213, 309, 405
Mox20I TGGCCA 1 cut(s) 463
MscI TGGCCA 1 cut(s) 463
MseI TTAA 2 cut(s) 213, 225
MslI CAYNNNNRTG 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 463
MspR9I CCNGG 2 cut(s) 198, 465
MvaI CCWGG 2 cut(s) 198, 465
MwoI GCNNNNNNNGC 1 cut(s) 151
NcoI CCATGG 1 cut(s) 320
NdeII GATC 4 cut(s) 43, 61, 115, 238
NlaIII CATG 2 cut(s) 280, 324
PfeI GAWTC 2 cut(s) 362, 400
PkrI GCNGC 1 cut(s) 335
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 196, 463
PspGI CCWGG 2 cut(s) 196, 463
PsuI RGATCY 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 2 cut(s) 213, 225
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 4 cut(s) 43, 61, 115, 238
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 198, 465
SduI GDGCHC 1 cut(s) 471
SetI ASST 9 cut(s) 21, 31, 124, 179, 199, 332, 389, 416, 449
SmiMI CAYNNNNRTG 1 cut(s) 387
Sse9I AATT 1 cut(s) 354
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 196, 463
StyI CCWWGG 1 cut(s) 320
TaqI TCGA 2 cut(s) 42, 452
TasI AATT 1 cut(s) 354
TfiI GAWTC 2 cut(s) 362, 400
Tru1I TTAA 2 cut(s) 213, 225
Tru9I TTAA 2 cut(s) 213, 225
TseI GCWGC 1 cut(s) 333
TspDTI ATGAA 2 cut(s) 27, 309
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.