Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0018170

Physical Location & Seq

Genomic Coordinates Reverse (-)

18867063 .. 18871663

Gene Structure 4601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG132700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGAGAACACTGGTGGAAAGAGTAGTGGTGACCCGGAAGTATAAGAAGGCTAAACGAAAGGAGAAATTCATACTAGGGACTGTGGCGCCTGTTGCTAATGGAAATGGTCCAGTTGACAACTATAGCTATGCAGAGCAACAATTCCAGCAGGTTGTCGAATCTAAGTATATCATGGAGGATCCTTCTGCAGAACCGGTTCATTTGAAACTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

71

Amino Acids

8.15

Weight (kDa)

9.52

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018170)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487671 RchiOBHm_Chr4g0393081
rosa_laevigata	RLG00000006837 RLG00000022977 RLG00000035072
rosa_multiflora	Rmu_sc0017669.1_g000011
rosa_roxburghii	Rroxscaffold_1G00065430
rosa_rugosa	Rorug03G0235400
rosa_samantha	Rh3AG283700 Rh6DG132700
rosa_wichuraiana	Rw2G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AccB1I	GGYRCC	1 cut(s)	85
AclWI	GGATC	2 cut(s)	173, 186
AcsI	RAATTY	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	86
AgeI	ACCGGT	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	1 cut(s)	126
AluI	AGCT	1 cut(s)	126
AlwI	GGATC	2 cut(s)	173, 186
ApoI	RAATTY	1 cut(s)	65
AsiGI	ACCGGT	1 cut(s)	193
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	178
BanI	GGYRCC	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	34
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	2 cut(s)	121, 186
BfoI	RGCGCY	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	2 cut(s)	87, 180
BmrFI	CCNGG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	34
BsaHI	GRCGYC	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	15, 110
BseNI	ACTGG	2 cut(s)	15, 110
BshNI	GGYRCC	1 cut(s)	85
BshTI	ACCGGT	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	34, 194
BslFI	GGGAC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	87, 180
BspMAI	CTGCAG	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	139
BspPI	GGATC	2 cut(s)	173, 186
BspT107I	GGYRCC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	15, 110
BssAI	RCCGGY	1 cut(s)	193
BssMI	GATC	1 cut(s)	178
BssNI	GRCGYC	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	82
BstACI	GRCGYC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	162
BstEII	GGTNACC	1 cut(s)	28
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	2 cut(s)	121, 186
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	8
BveI	ACCTGC	1 cut(s)	139
CfoI	GCGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	107
CspAI	ACCGGT	1 cut(s)	193
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	2 cut(s)	50, 126
CviKI_1	RGCY	2 cut(s)	50, 126
DdeI	CTNAG	1 cut(s)	162
DinI	GGCGCC	1 cut(s)	87
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	107
Eco91I	GGTNACC	1 cut(s)	28
EcoO65I	GGTNACC	1 cut(s)	28
EgeI	GGCGCC	1 cut(s)	87
EheI	GGCGCC	1 cut(s)	87
FaeI	CATG	1 cut(s)	175
FaiI	YATR	6 cut(s)	42, 71, 123, 129, 168, 173
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	171
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	89
HapII	CCGG	2 cut(s)	34, 194
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	2 cut(s)	34, 194
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	115
HpyAV	CCTTC	2 cut(s)	40, 192
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	131, 188, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	175
HspAI	GCGC	1 cut(s)	86
KasI	GGCGCC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	47, 102, 123, 134, 158, 207
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	2 cut(s)	65, 140
Mly113I	GGCGCC	1 cut(s)	86
MnlI	CCTC	1 cut(s)	169
MroXI	GAANNNNTTC	1 cut(s)	195
MspI	CCGG	2 cut(s)	34, 194
MspR9I	CCNGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	92
NarI	GGCGCC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	2 cut(s)	87, 180
NmuCI	GTSAC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	193
PluTI	GGCGCC	1 cut(s)	89
PspEI	GGTNACC	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	87, 180
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	178
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	2 cut(s)	128, 153
SfcI	CTRYAG	2 cut(s)	121, 186
SfoI	GGCGCC	1 cut(s)	87
SinI	GGWCC	1 cut(s)	107
Sse9I	AATT	2 cut(s)	65, 140
SspDI	GGCGCC	1 cut(s)	85
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	65, 140
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	58, 188
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.