RchiOBHm_Chr2g0085571

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016542
Physical Location & Seq
Forward (+)
949878 .. 950571
694 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
ATGGCTTCCAACACAATCTGCCTTCCAGTTCTGTCCATACTCTTCCTGCTGTTTGCTCTCTCTGAAGCGAGAGAAGTCACGGTCGATGGTTGGACAGTCGAAAACTCCGATCATTTGACCAAGTGGACTCACAGACACCATTTCACCACCGGCGATGTTCTCATATGGAAAACGAGCACTCCCCTCGGTTTCGAGCCTCCAGTCCTGGAAGTGACAAAGGAGGCGTATGAGAGCTGTGAAATATCAAACCCACTCAAAGCAAACGTAACGGAGGTGACTTTGAACCCTGCTGGGCTGTTTTACTTTATTAGCGGCGTTAAGGAGCTTTGTGACAAGGGATTGAAGATAACTGTGAAGGTTCATGGTGCTCGTAAACATTATGGGGCTCCTACTCAAGCACCGGCTCTGGCTCCGGAGACGAATAATATGGCAGCAGAGCCAGCTGCACCACCAACCAGTGCTGCATCGCATGGATTAATGGGGGGTGGGTTTATGGGTTTTGTTGCGATTGGGGTGGCAGGTGTAGTGGGGATGGCTCTGAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

182

Amino Acids

19.34

Weight (kDa)

5.94

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 31 - 113 4e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30590
fragaria_vesca FvH4_1g00840
malus_domestica MD02G1006700.v1.1
prunus_persica Prupe.7G263900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0085571
rosa_laevigata RLG00000015701
rosa_multiflora Rmu_ssc0000347.1_g000005
rosa_roxburghii Rroxscaffold_2G00155260
rosa_rugosa Rorug01G0461400
rosa_samantha Rh2AG010300 Rh2BG010900 Rh2CG011800 Rh2DG012800
rosa_wichuraiana Rw2G000920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 509
AccIII TCCGGA 1 cut(s) 412
AciI CCGC 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 84
AgsI TTSAA 2 cut(s) 283, 343
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 3 cut(s) 234, 325, 443
AluI AGCT 3 cut(s) 234, 325, 443
Alw21I GWGCWC 2 cut(s) 179, 370
Alw26I GTCTC 1 cut(s) 410
Aor13HI TCCGGA 1 cut(s) 412
ApeKI GCWGC 3 cut(s) 431, 443, 461
AseI ATTAAT 1 cut(s) 476
AsuHPI GGTGA 2 cut(s) 136, 286
BanII GRGCYC 1 cut(s) 388
Bbv12I GWGCWC 2 cut(s) 179, 370
BbvI GCAGC 3 cut(s) 430, 443, 448
BccI CCATC 2 cut(s) 80, 526
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 509
BisI GCNGC 4 cut(s) 313, 432, 444, 462
BlsI GCNGC 4 cut(s) 314, 433, 445, 463
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 387, 411
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 184
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bse118I RCCGGY 2 cut(s) 149, 400
Bse1I ACTGG 3 cut(s) 26, 200, 456
BseAI TCCGGA 1 cut(s) 412
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 537
BseNI ACTGG 3 cut(s) 26, 200, 456
BseXI GCAGC 3 cut(s) 430, 443, 448
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 429
Bsh1285I CGRYCG 1 cut(s) 84
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 179, 370
BsiSI CCGG 3 cut(s) 150, 401, 413
BsmAI GTCTC 1 cut(s) 410
BsmBI CGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 3 cut(s) 179, 370, 388
Bsp13I TCCGGA 1 cut(s) 412
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 387, 411
BspMI ACCTGC 1 cut(s) 509
BsrFI RCCGGY 2 cut(s) 149, 400
BsrI ACTGG 3 cut(s) 26, 200, 456
BssAI RCCGGY 2 cut(s) 149, 400
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 3 cut(s) 82, 97, 352
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 441
BstF5I GGATG 1 cut(s) 537
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 1 cut(s) 109
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 430, 443, 448
BtgZI GCGATG 2 cut(s) 168, 450
BtsCI GGATG 1 cut(s) 537
BtsIMutI CAGTG 1 cut(s) 463
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 1 cut(s) 441
Cfr10I RCCGGY 2 cut(s) 149, 400
CviAII CATG 2 cut(s) 362, 470
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 388
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 2 cut(s) 365, 473
FaiI YATR 9 cut(s) 38, 164, 166, 228, 363, 381, 428, 471, 494
FatI CATG 2 cut(s) 361, 469
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 4 cut(s) 313, 432, 444, 462
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 4 cut(s) 313, 432, 444, 462
GluI GCNGC 4 cut(s) 313, 432, 444, 462
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 183
HapII CCGG 3 cut(s) 150, 401, 413
Hin1II CATG 2 cut(s) 365, 473
HinfI GANTC 1 cut(s) 127
HpaII CCGG 3 cut(s) 150, 401, 413
HphI GGTGA 2 cut(s) 136, 286
Hpy166II GTNNAC 2 cut(s) 126, 374
Hpy188I TCNGA 3 cut(s) 64, 109, 540
Hpy188III TCNNGA 1 cut(s) 413
Hpy8I GTNNAC 2 cut(s) 126, 374
HpyAV CCTTC 2 cut(s) 32, 349
HpyCH4III ACNGT 3 cut(s) 82, 97, 352
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 2 cut(s) 446, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 365, 473
Kpn2I TCCGGA 1 cut(s) 412
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 3 cut(s) 322, 391, 415
Lsp1109I GCAGC 3 cut(s) 430, 443, 448
LweI GCATC 1 cut(s) 473
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 5 cut(s) 76, 211, 265, 274, 329
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 34, 355
MhlI GDGCHC 3 cut(s) 179, 370, 388
MlyI GAGTC 1 cut(s) 121
MmeI TCCRAC 2 cut(s) 33, 71
MnlI CCTC 4 cut(s) 194, 207, 214, 265
MroI TCCGGA 1 cut(s) 412
MseI TTAA 2 cut(s) 318, 476
MspA1I CMGCKG 1 cut(s) 443
MspI CCGG 3 cut(s) 150, 401, 413
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeI CATATG 1 cut(s) 164
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 365, 473
NlaIV GGNNCC 2 cut(s) 387, 411
NmuCI GTSAC 4 cut(s) 76, 211, 274, 329
PaqCI CACCTGC 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 204
PkrI GCNGC 4 cut(s) 314, 433, 445, 463
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
PshBI ATTAAT 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 387, 411
PvuII CAGCTG 1 cut(s) 443
SaqAI TTAA 2 cut(s) 318, 476
SatI GCNGC 4 cut(s) 313, 432, 444, 462
Sau3AI GATC 1 cut(s) 109
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 3 cut(s) 179, 370, 388
SetI ASST 7 cut(s) 236, 267, 276, 327, 360, 445, 523
SfaNI GCATC 1 cut(s) 473
SgrAI CRCCGGYG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 393
SmoI CTYRAG 1 cut(s) 393
SsiI CCGC 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 82, 97, 352
TaiI ACGT 1 cut(s) 267
TaqI TCGA 3 cut(s) 84, 99, 192
TauI GCSGC 1 cut(s) 315
Tru1I TTAA 2 cut(s) 318, 476
Tru9I TTAA 2 cut(s) 318, 476
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 4 cut(s) 76, 211, 274, 329
TseI GCWGC 3 cut(s) 431, 443, 461
Tsp45I GTSAC 4 cut(s) 76, 211, 274, 329
TspDTI ATGAA 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 463
VspI ATTAAT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.