RchiOBHm_Chr2g0090261

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013374
Physical Location & Seq
Forward (+)
4142011 .. 4144403
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGATGCTCAGGGTCTGGAAATGGTACCAGAGCTGCCTCTCTCAGCATCCATTGAAGACCCAGGTCATTAGCTCCGGCGTCCTCTGGGGCGTCGGCGACATTGCTGCCCAGTACATTACTCACTCCACCACAAGAAACCGTCTTCAGCTCTCCCACGACAAAGCTGAAGATTTCAAAGTTAACTGGAAACGAGTAGCTATCACAAGTACATTTGGCTTTGCTTTTGTTGGACCCGTTGGCCATTTCTGGTACGAAAACTTGGATAAGTTCATAAAGTTGAAGCTTCACCTAAAACCTAACTCAGCCCGGTTTGTTGCTGCTAAAGTGGCAATGGATGGTCTTATCTTTGGCCCCCTTGATTTGTTGGTGTTCTTCACCTACATGGGATTTTCCACTGGCAAGAATGCTGATCAAGTGAAGGAAGATTTGAAGAGAGATTTCATACCAGCCCTCATGTTGGAGGGTGGCGTGTGGCCAATTGTTCAAGTTGCAAATTTCAGATATGTTCCTGTGAGGTATCAGCTCCTCTATGTTAATATCTTCTGCCTGTTGGACAGTGCCTTTTTGTCATGGGTCGAGCAACAAAAGGATGCTGCTTGGAAGCAATGGTTAACATCTTTTGCATCTTTTAAAGACCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

213

Amino Acids

24.63

Weight (kDa)

9.49

Isoelectric Point (pI)

23.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 131 - 190 6.7e-19 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013374)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24570 AT3G24570
fragaria_vesca FvH4_1g04560
malus_domestica MD02G1045400.v1.1
prunus_persica Prupe.7G232500_v2.0.a1 Prupe.7G232500_v2.0.a1
pyrus_communis pycom02g03780
rosa_chinensis RchiOBHm_Chr2g0090261
rosa_laevigata RLG00000016092
rosa_multiflora Rmu_co8416553.1_g000001 Rmu_sc0004966.1_g000009
rosa_roxburghii Rroxscaffold_2G00151340
rosa_rugosa Rorug02G0006000
rosa_samantha Rh2AG051900 Rh2BG050500 Rh2CG052700 Rh2DG051800
rosa_wichuraiana Rw2G004500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 24
AcoI YGGCCR 2 cut(s) 238, 473
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 2 cut(s) 128, 186
AcyI GRCGYC 2 cut(s) 78, 90
AfaI GTAC 4 cut(s) 26, 113, 208, 251
AfiI CCNNNNNNNGG 1 cut(s) 457
AgsI TTSAA 5 cut(s) 55, 175, 280, 430, 485
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 7 cut(s) 33, 72, 148, 164, 197, 283, 523
AluI AGCT 7 cut(s) 33, 72, 148, 164, 197, 283, 523
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 3 cut(s) 238, 349, 473
ApeKI GCWGC 4 cut(s) 33, 104, 317, 593
ApoI RAATTY 1 cut(s) 493
Asp718I GGTACC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 230, 350
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 278, 367
AvaII GGWCC 1 cut(s) 230
BalI TGGCCA 2 cut(s) 240, 475
BanI GGYRCC 1 cut(s) 24
BbsI GAAGAC 2 cut(s) 62, 134
BbvI GCAGC 4 cut(s) 20, 91, 304, 580
BccI CCATC 1 cut(s) 329
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 307
BisI GCNGC 4 cut(s) 34, 105, 318, 594
BlsI GCNGC 4 cut(s) 35, 106, 319, 595
Bme1390I CCNGG 2 cut(s) 62, 307
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 230, 350
BmiI GGNNCC 3 cut(s) 26, 232, 352
BmrFI CCNGG 2 cut(s) 62, 307
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 3 cut(s) 55, 580, 632
BmuI ACTGGG 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 62
BpiI GAAGAC 2 cut(s) 62, 134
Bpu10I CCTNAGC 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 307
BsaHI GRCGYC 2 cut(s) 78, 90
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse1I ACTGG 3 cut(s) 109, 188, 400
Bse3DI GCAATG 3 cut(s) 99, 336, 611
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 46, 340, 595
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 3 cut(s) 99, 336, 611
BseMII CTCAG 3 cut(s) 22, 56, 315
BseNI ACTGG 3 cut(s) 109, 188, 400
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 4 cut(s) 20, 91, 304, 580
BshFI GGCC 3 cut(s) 240, 351, 475
BshNI GGYRCC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 75, 307
BslI CCNNNNNNNGG 1 cut(s) 457
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 3 cut(s) 240, 351, 475
Bsp143I GATC 1 cut(s) 409
BspANI GGCC 3 cut(s) 240, 351, 475
BspCNI CTCAG 3 cut(s) 21, 55, 314
BspLI GGNNCC 3 cut(s) 26, 232, 352
BspT107I GGYRCC 1 cut(s) 24
BsrDI GCAATG 3 cut(s) 99, 336, 611
BsrI ACTGG 3 cut(s) 109, 188, 400
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 409
BssNI GRCGYC 2 cut(s) 78, 90
Bst2UI CCWGG 1 cut(s) 62
Bst4CI ACNGT 2 cut(s) 140, 557
Bst6I CTCTTC 1 cut(s) 425
BstACI GRCGYC 2 cut(s) 78, 90
BstDEI CTNAG 3 cut(s) 8, 42, 301
BstF5I GGATG 3 cut(s) 46, 340, 595
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstNI CCWGG 1 cut(s) 62
BstPAI GACNNNNGTC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 60, 305
BstV1I GCAGC 4 cut(s) 20, 91, 304, 580
BstV2I GAAGAC 2 cut(s) 62, 134
BsuRI GGCC 3 cut(s) 240, 351, 475
BtsCI GGATG 3 cut(s) 46, 340, 595
BtsIMutI CAGTG 2 cut(s) 393, 562
CaiI CAGNNNCTG 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 230, 350
CseI GACGC 2 cut(s) 67, 79
Csp6I GTAC 4 cut(s) 25, 112, 207, 250
CviAII CATG 3 cut(s) 382, 454, 570
CviQI GTAC 4 cut(s) 25, 112, 207, 250
DdeI CTNAG 3 cut(s) 8, 42, 301
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
DraI TTTAAA 1 cut(s) 631
EaeI YGGCCR 2 cut(s) 238, 473
Eam1104I CTCTTC 1 cut(s) 425
EarI CTCTTC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 128, 186
EcoRII CCWGG 1 cut(s) 60
FaeI CATG 3 cut(s) 385, 457, 573
FaiI YATR 7 cut(s) 272, 383, 443, 455, 504, 531, 571
FatI CATG 3 cut(s) 381, 453, 569
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 4 cut(s) 34, 105, 318, 594
FokI GGATG 3 cut(s) 33, 347, 602
Fsp4HI GCNGC 4 cut(s) 34, 105, 318, 594
GluI GCNGC 4 cut(s) 34, 105, 318, 594
HaeIII GGCC 3 cut(s) 240, 351, 475
HapII CCGG 2 cut(s) 75, 307
HgaI GACGC 2 cut(s) 67, 79
Hin1I GRCGYC 2 cut(s) 78, 90
Hin1II CATG 3 cut(s) 385, 457, 573
HincII GTYRAC 2 cut(s) 181, 612
HindII GTYRAC 2 cut(s) 181, 612
HindIII AAGCTT 1 cut(s) 281
HpaI GTTAAC 2 cut(s) 181, 612
HpaII CCGG 2 cut(s) 75, 307
HphI GGTGA 2 cut(s) 278, 367
Hpy166II GTNNAC 2 cut(s) 181, 612
Hpy188I TCNGA 1 cut(s) 500
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 2 cut(s) 181, 612
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 2 cut(s) 140, 557
HpyCH4V TGCA 2 cut(s) 491, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 3 cut(s) 8, 42, 301
Hsp92I GRCGYC 2 cut(s) 78, 90
Hsp92II CATG 3 cut(s) 385, 457, 573
KpnI GGTACC 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 409
KspAI GTTAAC 2 cut(s) 181, 612
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 2 cut(s) 77, 528
Lsp1109I GCAGC 4 cut(s) 20, 91, 304, 580
LweI GCATC 3 cut(s) 55, 580, 632
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 7 cut(s) 67, 134, 179, 364, 434, 442, 532
MfeI CAATTG 1 cut(s) 477
MlsI TGGCCA 2 cut(s) 240, 475
MluCI AATT 2 cut(s) 477, 493
MluNI TGGCCA 2 cut(s) 240, 475
MmeI TCCRAC 3 cut(s) 208, 438, 531
MnlI CCTC 6 cut(s) 47, 92, 454, 461, 507, 536
Mox20I TGGCCA 2 cut(s) 240, 475
MscI TGGCCA 2 cut(s) 240, 475
MseI TTAA 4 cut(s) 180, 534, 611, 630
MslI CAYNNNNRTG 1 cut(s) 380
Msp20I TGGCCA 2 cut(s) 240, 475
MspI CCGG 2 cut(s) 75, 307
MspR9I CCNGG 2 cut(s) 62, 307
MunI CAATTG 1 cut(s) 477
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 326
NciI CCSGG 1 cut(s) 307
NdeII GATC 1 cut(s) 409
NlaIII CATG 3 cut(s) 385, 457, 573
NlaIV GGNNCC 3 cut(s) 26, 232, 352
PctI GAATGC 1 cut(s) 409
PkrI GCNGC 4 cut(s) 35, 106, 319, 595
PshAI GACNNNNGTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspN4I GGNNCC 3 cut(s) 26, 232, 352
PspPI GGNCC 2 cut(s) 230, 350
PstNI CAGNNNCTG 1 cut(s) 15
RsaI GTAC 4 cut(s) 26, 113, 208, 251
RsaNI GTAC 4 cut(s) 25, 112, 207, 250
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 4 cut(s) 180, 534, 611, 630
SatI GCNGC 4 cut(s) 34, 105, 318, 594
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 2 cut(s) 230, 350
ScrFI CCNGG 2 cut(s) 62, 307
SfaNI GCATC 3 cut(s) 55, 580, 632
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 2 cut(s) 477, 493
StyD4I CCNGG 2 cut(s) 60, 305
TaaI ACNGT 2 cut(s) 140, 557
TaqI TCGA 1 cut(s) 576
TasI AATT 2 cut(s) 477, 493
TatI WGTACW 2 cut(s) 111, 206
Tru1I TTAA 4 cut(s) 180, 534, 611, 630
Tru9I TTAA 4 cut(s) 180, 534, 611, 630
TscAI CASTG 2 cut(s) 400, 562
TseI GCWGC 4 cut(s) 33, 104, 317, 593
TspDTI ATGAA 2 cut(s) 259, 430
TspRI CASTG 2 cut(s) 400, 562
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.