RchiOBHm_Chr2g0098341

protein At4g08330, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015322
Physical Location & Seq
Forward (+)
10758981 .. 10759619
639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 399 bp
ATGACTTCTTCATCTTCATCTTCTCCGGTCTACACCTGCACGGAGTGCGGAGCAAACCTGAACCTGAACGCAGCCTATCTCTACCCGCCGGACGTTTACTTCGAGGCCGGCAACAAGAAAACGCTGTCGTTTTCGGGGATCGACACGACCAAATTCAGGTTCGAGAAGGAGGACAAGATCATGCCCTTCTGGGAGACCCGAAACTATTGGGGGATCCAACGGACGAGGACCAAGATCAAGTGCAACGGATGTGGGCGGCTGGTCGGACACGTGTACGACGATGGGCCGCCGATGATGGTGGGGAATGGGCAGTATGGGTTCGGGCCCAGCCAGGTTATTCCCAGAGCGGCTAGGTACAGGTTCAAGATCAAGGCCTTACGGGTTTCGTCTCAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SelR

Protein Analysis

132

Amino Acids

14.87

Weight (kDa)

9.48

Isoelectric Point (pI)

28.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g08330 PF24046 4 - 129 1.3e-39 At4g08330 beta-tent
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015322)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17705
fragaria_vesca FvH4_1g11071
malus_domestica MD02G1123500.v1.1 MD15G1237300.v1.1
prunus_persica Prupe.7G175100_v2.0.a1
pyrus_communis pycom02g09620
rosa_chinensis RchiOBHm_Chr2g0098341
rosa_laevigata RLG00000016792
rosa_multiflora Rmu_sc0003434.1_g000003
rosa_roxburghii Rroxscaffold_2G00144050
rosa_rugosa Rorug02G0072200
rosa_samantha Rh2AG119300 Rh2BG122500 Rh2CG124100 Rh2DG124200
rosa_wichuraiana Rw2G009350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 44
AccBSI CCGCTC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 30
AciI CCGC 5 cut(s) 48, 86, 256, 287, 347
AclWI GGATC 3 cut(s) 146, 208, 221
AcsI RAATTY 1 cut(s) 152
AcvI CACGTG 1 cut(s) 271
AdeI CACNNNGTG 1 cut(s) 45
AfaI GTAC 2 cut(s) 275, 356
AfiI CCNNNNNNNGG 1 cut(s) 156
AflIII ACRYGT 2 cut(s) 268, 270
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 1 cut(s) 330
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
Alw26I GTCTC 2 cut(s) 188, 393
AlwI GGATC 3 cut(s) 146, 208, 221
AoxI GGCC 4 cut(s) 105, 284, 323, 372
ApaI GGGCCC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AspS9I GGNCC 4 cut(s) 228, 284, 323, 324
AvaII GGWCC 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 327
BamHI GGATCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 327
BbrPI CACGTG 1 cut(s) 271
BbvI GCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 275, 289
BciT130I CCWGG 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 188, 393
BfaI CTAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 44
BisI GCNGC 4 cut(s) 72, 257, 287, 348
BlsI GCNGC 4 cut(s) 73, 258, 288, 349
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 4 cut(s) 228, 284, 323, 324
BmiI GGNNCC 2 cut(s) 215, 325
BmrFI CCNGG 1 cut(s) 332
BsaAI YACGTR 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse118I RCCGGY 1 cut(s) 107
BseBI CCWGG 1 cut(s) 332
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 1 cut(s) 83
BseYI CCCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 22
BshFI GGCC 4 cut(s) 107, 286, 325, 374
BsiSI CCGG 3 cut(s) 26, 89, 108
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 188, 393
BsmBI CGTCTC 1 cut(s) 393
BsnI GGCC 4 cut(s) 107, 286, 325, 374
Bso31I GGTCTC 1 cut(s) 188
Bsp120I GGGCCC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 5 cut(s) 138, 177, 213, 234, 366
BspACI CCGC 5 cut(s) 48, 86, 256, 287, 347
BspANI GGCC 4 cut(s) 107, 286, 325, 374
BspLI GGNNCC 2 cut(s) 215, 325
BspMI ACCTGC 1 cut(s) 44
BspPI GGATC 3 cut(s) 146, 208, 221
BspTNI GGTCTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssMI GATC 5 cut(s) 138, 177, 213, 234, 366
Bst2UI CCWGG 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 271
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 5 cut(s) 141, 180, 216, 237, 369
BstMAI GTCTC 2 cut(s) 188, 393
BstMBI GATC 5 cut(s) 138, 177, 213, 234, 366
BstMWI GCNNNNNNNGC 1 cut(s) 45
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 4 cut(s) 107, 286, 325, 374
BtsCI GGATG 1 cut(s) 254
BveI ACCTGC 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 4 cut(s) 228, 284, 323, 324
Csp6I GTAC 2 cut(s) 274, 355
CspCI CAANNNNNGTGG 2 cut(s) 232, 267
CviAII CATG 1 cut(s) 181
CviJI RGCY 8 cut(s) 74, 107, 259, 286, 325, 330, 350, 374
CviKI_1 RGCY 8 cut(s) 74, 107, 259, 286, 325, 330, 350, 374
CviQI GTAC 2 cut(s) 274, 355
DdeI CTNAG 1 cut(s) 390
DpnI GATC 5 cut(s) 140, 179, 215, 236, 368
DpnII GATC 5 cut(s) 138, 177, 213, 234, 366
DraIII CACNNNGTG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 228
Eco72I CACGTG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 327
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 1 cut(s) 184
FaiI YATR 2 cut(s) 182, 315
FatI CATG 1 cut(s) 180
FauI CCCGC 1 cut(s) 93
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 72, 257, 287, 348
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 4 cut(s) 72, 257, 287, 348
FspBI CTAG 1 cut(s) 351
GluI GCNGC 4 cut(s) 72, 257, 287, 348
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 4 cut(s) 107, 286, 325, 374
HapII CCGG 3 cut(s) 26, 89, 108
Hin1II CATG 1 cut(s) 184
HpaII CCGG 3 cut(s) 26, 89, 108
Hpy166II GTNNAC 3 cut(s) 31, 97, 274
Hpy188I TCNGA 2 cut(s) 266, 393
Hpy188III TCNNGA 2 cut(s) 163, 364
Hpy8I GTNNAC 3 cut(s) 31, 97, 274
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 160, 196
HpyCH4IV ACGT 2 cut(s) 93, 270
HpyCH4V TGCA 2 cut(s) 39, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 45
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 2 cut(s) 93, 270
Hsp92II CATG 1 cut(s) 184
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Kzo9I GATC 5 cut(s) 138, 177, 213, 234, 366
LmnI GCTCC 1 cut(s) 50
Lsp1109I GCAGC 1 cut(s) 83
MaeI CTAG 1 cut(s) 351
MaeII ACGT 2 cut(s) 93, 270
MalI GATC 5 cut(s) 140, 179, 215, 236, 368
MbiI CCGCTC 1 cut(s) 347
MboI GATC 5 cut(s) 138, 177, 213, 234, 366
MboII GAAGA 2 cut(s) 6, 12
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 1 cut(s) 152
MmeI TCCRAC 2 cut(s) 241, 244
MnlI CCTC 3 cut(s) 97, 163, 219
MroNI GCCGGC 1 cut(s) 107
MspI CCGG 3 cut(s) 26, 89, 108
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 45
NaeI GCCGGC 1 cut(s) 109
NdeII GATC 5 cut(s) 138, 177, 213, 234, 366
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 215, 325
PaqCI CACCTGC 1 cut(s) 44
PceI AGGCCT 1 cut(s) 374
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 276
PdiI GCCGGC 1 cut(s) 109
PkrI GCNGC 4 cut(s) 73, 258, 288, 349
PmaCI CACGTG 1 cut(s) 271
PmlI CACGTG 1 cut(s) 271
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 330
PspCI CACGTG 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 330
PspN4I GGNNCC 2 cut(s) 215, 325
PspOMI GGGCCC 1 cut(s) 323
PspPI GGNCC 4 cut(s) 228, 284, 323, 324
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 2 cut(s) 275, 356
RsaNI GTAC 2 cut(s) 274, 355
SatI GCNGC 4 cut(s) 72, 257, 287, 348
Sau3AI GATC 5 cut(s) 138, 177, 213, 234, 366
Sau96I GGNCC 4 cut(s) 228, 284, 323, 324
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 327
SetI ASST 9 cut(s) 38, 60, 66, 96, 161, 273, 336, 356, 362
SinI GGWCC 1 cut(s) 228
Sse9I AATT 1 cut(s) 152
SseBI AGGCCT 1 cut(s) 374
SsiI CCGC 5 cut(s) 48, 86, 256, 287, 347
SspMI CTAG 1 cut(s) 351
StuI AGGCCT 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 330
TaiI ACGT 2 cut(s) 96, 273
TaqI TCGA 3 cut(s) 102, 141, 162
TasI AATT 1 cut(s) 152
TauI GCSGC 3 cut(s) 259, 289, 350
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 6
TspGWI ACGGA 3 cut(s) 56, 235, 261
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.