RchiOBHm_Chr2g0101251

Component of the anaphase promoting complex cyclosome (APC C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015965
Physical Location & Seq
Reverse (-)
12906106 .. 12908066
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 579 bp
ATGGCGACAGAATCATCGGAGGGAGAAGAGGAAGGGAAGCTGACGGTAGGGAACCAAGTGCTAATGGTGGAAGACGACCTCCGAGAAATGGGCAAGAACGCCGCCTGGAGCGTCAGCTCTTGGAAGTCCGGCAACGGCGTGTCGTTTCTCCGCGACGACAATCTCGACACTTACTGGCAATCGGACGGCGCTCAACCTCACTCGGTCAACATTCAGTTCCAGAAGAAAGTCAAGCTCCAACTTGTTGTTCTCTACGTGGATTTCAAGCTTGATGAGAGCTATACGCCATCGAAGATATCGATTCGTGCTGGGGATGGCTTCCACAACTTGAAGGACATAAAAACCGTTGAGCTAGATAAGCCGAGGGGTTGGGTTCATATATCTCTGTCTGGAAATGATCCAAGGGAAACTTTTGTCAACACATTTATGCTGCAAATCTCAGTGTTATCAAATCACCTTAATGGGAGGGACACGCATGTGCGCCAGATCAAACTATATGGCCCTAGACCGAACCCTATTCCACATCAGCCATTTCAGTTTACTTCAAGGAAGTTCATTACTTATGCTTCTATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000152 GO:0000209 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005680 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008156 GO:0008283 GO:0009056 GO:0009057 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010087 GO:0010498 GO:0010556 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010948 GO:0016567 GO:0016604 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0030163 GO:0031145 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031461 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032446 GO:0032502 GO:0032875 GO:0032876 GO:0032991 GO:0036211 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045786 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051438 GO:0051443 GO:0051603 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0070647 GO:0070979 GO:0071704 GO:0080090 GO:0090329 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1903320 GO:1903322 GO:1904666 GO:1904668 GO:1990234 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
ANAPC10

Protein Analysis

192

Amino Acids

21.85

Weight (kDa)

7.03

Isoelectric Point (pI)

25.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANAPC10 PF03256 22 - 189 6.3e-74 Anaphase-promoting complex, subunit 10 (APC10)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015965)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18290
fragaria_vesca FvH4_1g13080 FvH4_1g13080 FvH4_5g29620
malus_domestica MD02G1145400.v1.1
prunus_persica Prupe.7G156300_v2.0.a1
pyrus_communis pycom02g11510
rosa_chinensis RchiOBHm_Chr2g0101251
rosa_laevigata RLG00000017065
rosa_multiflora Rmu_sc0006314.1_g000017
rosa_roxburghii Rroxscaffold_2G00141460
rosa_rugosa Rorug02G0099700 Rorug02G0099800
rosa_samantha Rh2CG151300
rosa_wichuraiana Rw2G011350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 102, 151
AclWI GGATC 1 cut(s) 392
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 3 cut(s) 265, 331, 546
AjnI CCWGG 1 cut(s) 104
AjuI GAANNNNNNNTTGG 2 cut(s) 231, 263
AleI CACNNNNGTG 1 cut(s) 476
AluBI AGCT 6 cut(s) 40, 117, 235, 268, 279, 352
AluI AGCT 6 cut(s) 40, 117, 235, 268, 279, 352
AlwI GGATC 1 cut(s) 392
AoxI GGCC 1 cut(s) 499
ApeKI GCWGC 1 cut(s) 430
AspLEI GCGC 2 cut(s) 191, 483
AspS9I GGNCC 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 417
BccI CCATC 2 cut(s) 295, 308
BceAI ACGGC 2 cut(s) 151, 202
BciT130I CCWGG 1 cut(s) 106
BfaI CTAG 2 cut(s) 353, 504
BfoI RGCGCY 1 cut(s) 192
BisI GCNGC 2 cut(s) 102, 431
BlsI GCNGC 2 cut(s) 103, 432
Bme1390I CCNGG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 127
Bsa29I ATCGAT 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 362, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 106
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 362, 401
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 308
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 1 cut(s) 501
BshVI ATCGAT 1 cut(s) 299
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 482
BslI CCNNNNNNNGG 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 482
BsnI GGCC 1 cut(s) 501
Bsp143I GATC 2 cut(s) 397, 486
BspACI CCGC 2 cut(s) 102, 151
BspANI GGCC 1 cut(s) 501
BspCNI CTCAG 1 cut(s) 452
BspDI ATCGAT 1 cut(s) 299
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 392
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 362, 401
BssMI GATC 2 cut(s) 397, 486
BssT1I CCWWGG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 46, 346
Bst6I CTCTTC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 439
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 2 cut(s) 191, 483
BstKTI GATC 2 cut(s) 400, 489
BstMBI GATC 2 cut(s) 397, 486
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 104
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 417
BstV2I GAAGAC 1 cut(s) 78
Bsu15I ATCGAT 1 cut(s) 299
BsuRI GGCC 1 cut(s) 501
BsuTUI ATCGAT 1 cut(s) 299
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 447
CfoI GCGC 2 cut(s) 191, 483
Cfr13I GGNCC 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 299
CseI GACGC 1 cut(s) 100
CviAII CATG 1 cut(s) 476
DdeI CTNAG 1 cut(s) 439
DpnI GATC 2 cut(s) 399, 488
DpnII GATC 2 cut(s) 397, 486
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 401
Eco32I GATATC 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 1 cut(s) 479
FaiI YATR 9 cut(s) 282, 338, 378, 380, 428, 477, 496, 498, 564
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FaqI GGGAC 1 cut(s) 482
FatI CATG 1 cut(s) 475
Fnu4HI GCNGC 2 cut(s) 102, 431
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 2 cut(s) 102, 431
FspBI CTAG 2 cut(s) 353, 504
GlaI GCGC 2 cut(s) 190, 482
GluI GCNGC 2 cut(s) 102, 431
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 127
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 1 cut(s) 501
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 100
HhaI GCGC 2 cut(s) 191, 483
Hin1II CATG 1 cut(s) 479
Hin6I GCGC 2 cut(s) 189, 481
HinP1I GCGC 2 cut(s) 189, 481
HincII GTYRAC 2 cut(s) 208, 418
HindII GTYRAC 2 cut(s) 208, 418
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 11, 301
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 3 cut(s) 208, 418, 540
Hpy188I TCNGA 4 cut(s) 19, 83, 184, 575
Hpy188III TCNNGA 3 cut(s) 164, 220, 390
Hpy8I GTNNAC 3 cut(s) 208, 418, 540
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 26, 325
HpyCH4III ACNGT 2 cut(s) 46, 346
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpyF3I CTNAG 1 cut(s) 439
HpySE526I ACGT 1 cut(s) 255
Hsp92II CATG 1 cut(s) 479
HspAI GCGC 2 cut(s) 189, 481
Kzo9I GATC 2 cut(s) 397, 486
LmnI GCTCC 2 cut(s) 108, 240
LpnPI CCDG 8 cut(s) 91, 118, 142, 160, 233, 294, 375, 497
Lsp1109I GCAGC 1 cut(s) 417
MaeI CTAG 2 cut(s) 353, 504
MaeII ACGT 1 cut(s) 255
MalI GATC 2 cut(s) 399, 488
MboI GATC 2 cut(s) 397, 486
MboII GAAGA 4 cut(s) 38, 83, 235, 304
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 6 cut(s) 13, 22, 89, 207, 357, 459
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 3 cut(s) 425, 459, 476
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeII GATC 2 cut(s) 397, 486
NlaIII CATG 1 cut(s) 479
NlaIV GGNNCC 1 cut(s) 53
NmeAIII GCCGAG 1 cut(s) 387
NspI RCATGY 1 cut(s) 479
OliI CACNNNNGTG 1 cut(s) 476
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 296
PfeI GAWTC 2 cut(s) 11, 301
PkrI GCNGC 2 cut(s) 103, 432
Ppu21I YACGTR 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 500
RseI CAYNNNNRTG 3 cut(s) 425, 459, 476
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 2 cut(s) 102, 431
Sau3AI GATC 2 cut(s) 397, 486
Sau96I GGNCC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 106
SmiMI CAYNNNNRTG 3 cut(s) 425, 459, 476
SsiI CCGC 2 cut(s) 102, 151
SspMI CTAG 2 cut(s) 353, 504
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 2 cut(s) 46, 346
TaiI ACGT 1 cut(s) 258
TaqI TCGA 3 cut(s) 165, 290, 299
TaqII GACCGA 2 cut(s) 193, 523
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 2 cut(s) 11, 301
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 1 cut(s) 447
TseI GCWGC 1 cut(s) 430
TspDTI ATGAA 2 cut(s) 365, 544
TspRI CASTG 1 cut(s) 447
XceI RCATGY 1 cut(s) 479
XspI CTAG 2 cut(s) 353, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.