RchiOBHm_Chr2g0101881

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013590
Physical Location & Seq
Reverse (-)
13325661 .. 13328090
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1089 bp
ATGGATCGAGCAAGGAGGGCAAAGGAGTTGGTAGCAAACAAGAACAGCATGATATACATGGACCTCAAGGATATAGTCAAGGATCATGCTCTCCCATTCCTCCCCGCCAAATCACTGTTCAGGTTCAATGGGGTTTGTAAGGACTGGAAGACCCAGATCAGATCTCCTTTCTTTGCCCACAAGCAGTCAACTAGCTTTTCTGATGTCTCGGGCTTCTTTCTTGTTTCCGCATCAACCGTACCTTCATTTATCTCTATTGATTCCATGGCCTATGGTGTTCCAGACCCGTCGCTGAAGTTTTTACCTGAGCCAGTTGACATAAGGGCTTCTTCCAATGGACTACTTTGCTGCCAGGGACGTGAAGGCTATAAGGCTTACTACATCTGCAATCCGGTTACTAAGCAGTGGAAAAAACTTCCTAAACCAAATGCTGACCATGGATCTGACCCTGCTCTAGTTCTCATCTTTGAGCCGTCTTTGCTCAGTTTTGTGGCCGAGTACAAGCTGGTCTGTGCTTTCCCATCACAGGATTTTGAGAATGGACATGAATTTGAGATCTATTCCTCCAAGGAGGGGTCTTGGAGAATTTCTGGTGAGATTTTCTATGGCGGTGGATCTGTTGTGCCAAGATCTGGTGTTTATGTGAATGACATAATCTATTGGTATGCATCAAGTGGTAGGATTCTTGTTTTTGACCTGAAGATGGAGAGGGCACAACTCCTTTATGGCCATGGTTATTATGATTCAATCTTGGGTGTGATTGATGGAAAGCTATGTTCGGCCAAGGCTCAGGGTACTGGAGTAACCATAAGTGTGTTGTCTAATGCTTACACAAACACAATGCAGATGCACAGCTCAGTCAAGGCATGGGAAAGGAAACTTACAATCAATCTTACCCCTGCACCAGTACCTTCAACGGCTGGTAGTTCTACTGGTAGTTTATTGTTTGCAAGTGGGAATCTAGTATTGTACCGGTGTGGCTCAAAACTCCATTCGTACAACCTGCGGACTAAAGAGACTCTGTACATAGGTGATGAGCTTTACCATGGGACATTTGTTCCTCATGTGAACAGCCTCGTGGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

362

Amino Acids

40.17

Weight (kDa)

8.66

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 107 - 263 1.5e-08 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 108 - 236 8.3e-13 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 110 - 240 1.5e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013590)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g13490
malus_domestica MD02G1150300.v1.1 MD15G1264700.v1.1 MD15G1264800.v1.1
prunus_persica Prupe.7G152800_v2.0.a1
pyrus_communis pycom02g11810 pycom15g23050 pycom15g23060
rosa_chinensis RchiOBHm_Chr2g0101881
rosa_laevigata RLG00000017107
rosa_multiflora Rmu_sc0008071.1_g000001
rosa_roxburghii Rroxscaffold_2G00140970
rosa_rugosa Rorug02G0102800
rosa_samantha Rh2AG150100 Rh2BG155700 Rh2CG156000 Rh2DG155800
rosa_wichuraiana Rw2G011750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1011
AccB7I CCANNNNNTGG 1 cut(s) 632
AciI CCGC 4 cut(s) 105, 228, 609, 1006
AclWI GGATC 4 cut(s) 12, 90, 448, 622
AcoI YGGCCR 3 cut(s) 492, 727, 780
AcsI RAATTY 2 cut(s) 548, 585
AcuI CTGAAG 2 cut(s) 314, 719
AfaI GTAC 7 cut(s) 240, 500, 796, 909, 971, 998, 1025
AfiI CCNNNNNNNGG 4 cut(s) 526, 573, 632, 703
AgeI ACCGGT 1 cut(s) 972
AgsI TTSAA 3 cut(s) 127, 747, 915
AjiI CACGTC 1 cut(s) 359
AjnI CCWGG 1 cut(s) 351
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 5 cut(s) 195, 505, 772, 855, 1039
AluI AGCT 5 cut(s) 195, 505, 772, 855, 1039
Alw26I GTCTC 2 cut(s) 211, 1010
AlwI GGATC 4 cut(s) 12, 90, 448, 622
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 4 cut(s) 267, 492, 727, 780
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 2 cut(s) 548, 585
AsiGI ACCGGT 1 cut(s) 972
AspS9I GGNCC 1 cut(s) 61
AsuHPI GGTGA 2 cut(s) 605, 1043
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 715
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BalI TGGCCA 1 cut(s) 729
BauI CACGAG 1 cut(s) 1076
BbsI GAAGAC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 335
BccI CCATC 3 cut(s) 529, 697, 758
BceAI ACGGC 2 cut(s) 457, 933
BciT130I CCWGG 1 cut(s) 353
BcoDI GTCTC 2 cut(s) 211, 1010
BfaI CTAG 3 cut(s) 192, 455, 962
BfuAI ACCTGC 1 cut(s) 1011
BglII AGATCT 3 cut(s) 161, 555, 629
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 3 cut(s) 239, 677, 837
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 1 cut(s) 819
Bpu10I CCTNAGC 2 cut(s) 306, 789
BpuEI CTTGAG 1 cut(s) 50
BsaJI CCNNGG 7 cut(s) 264, 352, 436, 567, 730, 783, 1045
BsaWI WCCGGW 2 cut(s) 391, 972
Bsc4I CCNNNNNNNGG 4 cut(s) 526, 573, 632, 703
Bse118I RCCGGY 1 cut(s) 972
Bse1I ACTGG 5 cut(s) 149, 311, 802, 905, 937
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 7 cut(s) 264, 352, 436, 567, 730, 783, 1045
BseLI CCNNNNNNNGG 4 cut(s) 526, 573, 632, 703
BseMII CTCAG 4 cut(s) 297, 496, 803, 870
BseNI ACTGG 5 cut(s) 149, 311, 802, 905, 937
BseSI GKGCMC 1 cut(s) 715
BseXI GCAGC 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 885
BshFI GGCC 4 cut(s) 269, 494, 729, 782
BshTI ACCGGT 1 cut(s) 972
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 2 cut(s) 392, 973
BslFI GGGAC 2 cut(s) 369, 1063
BslI CCNNNNNNNGG 4 cut(s) 526, 573, 632, 703
BsmAI GTCTC 2 cut(s) 211, 1010
BsmFI GGGAC 2 cut(s) 369, 1063
BsnI GGCC 4 cut(s) 269, 494, 729, 782
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 715
Bsp1407I TGTACA 1 cut(s) 1023
Bsp143I GATC 8 cut(s) 4, 82, 156, 161, 440, 555, 614, 629
Bsp19I CCATGG 4 cut(s) 264, 436, 730, 1045
BspACI CCGC 4 cut(s) 105, 228, 609, 1006
BspANI GGCC 4 cut(s) 269, 494, 729, 782
BspCNI CTCAG 4 cut(s) 298, 495, 802, 869
BspMI ACCTGC 1 cut(s) 1011
BspPI GGATC 4 cut(s) 12, 90, 448, 622
BsrFI RCCGGY 1 cut(s) 972
BsrGI TGTACA 1 cut(s) 1023
BsrI ACTGG 5 cut(s) 149, 311, 802, 905, 937
BssAI RCCGGY 1 cut(s) 972
BssECI CCNNGG 7 cut(s) 264, 352, 436, 567, 730, 783, 1045
BssMI GATC 8 cut(s) 4, 82, 156, 161, 440, 555, 614, 629
BssSI CACGAG 1 cut(s) 1076
BssT1I CCWWGG 6 cut(s) 264, 436, 567, 730, 783, 1045
Bst2BI CACGAG 1 cut(s) 1076
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 117, 238
BstAUI TGTACA 1 cut(s) 1023
BstDEI CTNAG 5 cut(s) 306, 399, 482, 789, 856
BstDSI CCRYGG 4 cut(s) 264, 436, 730, 1045
BstKTI GATC 8 cut(s) 7, 85, 159, 164, 443, 558, 617, 632
BstMAI GTCTC 2 cut(s) 211, 1010
BstMBI GATC 8 cut(s) 4, 82, 156, 161, 440, 555, 614, 629
BstMWI GCNNNNNNNGC 2 cut(s) 17, 478
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 715
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 5 cut(s) 161, 440, 555, 614, 629
BstYI RGATCY 5 cut(s) 161, 440, 555, 614, 629
BsuRI GGCC 4 cut(s) 269, 494, 729, 782
BtgI CCRYGG 4 cut(s) 264, 436, 730, 1045
BtrI CACGTC 1 cut(s) 359
BtsI GCAGTG 1 cut(s) 410
BtsIMutI CAGTG 2 cut(s) 113, 410
BveI ACCTGC 1 cut(s) 1011
Cfr10I RCCGGY 1 cut(s) 972
Cfr13I GGNCC 1 cut(s) 61
Csp6I GTAC 7 cut(s) 239, 499, 795, 908, 970, 997, 1024
CspAI ACCGGT 1 cut(s) 972
CviQI GTAC 7 cut(s) 239, 499, 795, 908, 970, 997, 1024
DdeI CTNAG 5 cut(s) 306, 399, 482, 789, 856
DpnI GATC 8 cut(s) 6, 84, 158, 163, 442, 557, 616, 631
DpnII GATC 8 cut(s) 4, 82, 156, 161, 440, 555, 614, 629
EaeI YGGCCR 3 cut(s) 492, 727, 780
Eco130I CCWWGG 6 cut(s) 264, 436, 567, 730, 783, 1045
Eco47I GGWCC 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 314, 719
Eco88I CYCGRG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 6 cut(s) 264, 436, 567, 730, 783, 1045
EcoT22I ATGCAT 1 cut(s) 670
ErhI CCWWGG 6 cut(s) 264, 436, 567, 730, 783, 1045
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FaqI GGGAC 2 cut(s) 369, 1063
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 3 cut(s) 192, 455, 962
GluI GCNGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 819
HaeIII GGCC 4 cut(s) 269, 494, 729, 782
HapII CCGG 2 cut(s) 392, 973
HincII GTYRAC 2 cut(s) 189, 316
HindII GTYRAC 2 cut(s) 189, 316
HinfI GANTC 5 cut(s) 260, 682, 743, 958, 1018
HpaII CCGG 2 cut(s) 392, 973
HphI GGTGA 2 cut(s) 605, 1043
Hpy166II GTNNAC 3 cut(s) 189, 316, 1069
Hpy188I TCNGA 3 cut(s) 161, 202, 445
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 3 cut(s) 189, 316, 1069
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 3 cut(s) 252, 356, 921
HpyCH4III ACNGT 2 cut(s) 117, 238
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 6 cut(s) 387, 668, 844, 850, 902, 950
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 478
HpyF3I CTNAG 5 cut(s) 306, 399, 482, 789, 856
HpySE526I ACGT 1 cut(s) 358
Kzo9I GATC 8 cut(s) 4, 82, 156, 161, 440, 555, 614, 629
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 3 cut(s) 239, 677, 837
MaeI CTAG 3 cut(s) 192, 455, 962
MaeII ACGT 1 cut(s) 358
MaeIII GTNAC 2 cut(s) 394, 802
MalI GATC 8 cut(s) 6, 84, 158, 163, 442, 557, 616, 631
MboI GATC 8 cut(s) 4, 82, 156, 161, 440, 555, 614, 629
MboII GAAGA 3 cut(s) 160, 321, 712
MflI RGATCY 5 cut(s) 161, 440, 555, 614, 629
MhlI GDGCHC 1 cut(s) 715
MlsI TGGCCA 1 cut(s) 729
MluCI AATT 2 cut(s) 548, 585
MluNI TGGCCA 1 cut(s) 729
MlyI GAGTC 1 cut(s) 1012
MnlI CCTC 8 cut(s) 9, 74, 110, 565, 574, 702, 1071, 1085
Mox20I TGGCCA 1 cut(s) 729
Mph1103I ATGCAT 1 cut(s) 670
MscI TGGCCA 1 cut(s) 729
MslI CAYNNNNRTG 1 cut(s) 812
Msp20I TGGCCA 1 cut(s) 729
MspI CCGG 2 cut(s) 392, 973
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 17, 478
NcoI CCATGG 4 cut(s) 264, 436, 730, 1045
NdeII GATC 8 cut(s) 4, 82, 156, 161, 440, 555, 614, 629
NmeAIII GCCGAG 1 cut(s) 520
NsiI ATGCAT 1 cut(s) 670
PfeI GAWTC 4 cut(s) 260, 682, 743, 958
PflMI CCANNNNNTGG 1 cut(s) 632
PinAI ACCGGT 1 cut(s) 972
PkrI GCNGC 1 cut(s) 350
PleI GAGTC 1 cut(s) 1012
PpsI GAGTC 1 cut(s) 1012
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 5 cut(s) 161, 440, 555, 614, 629
RsaI GTAC 7 cut(s) 240, 500, 796, 909, 971, 998, 1025
RsaNI GTAC 7 cut(s) 239, 499, 795, 908, 970, 997, 1024
RseI CAYNNNNRTG 1 cut(s) 812
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 8 cut(s) 4, 82, 156, 161, 440, 555, 614, 629
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 1 cut(s) 1012
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 715
SfaNI GCATC 3 cut(s) 239, 677, 837
SinI GGWCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 2 cut(s) 548, 585
SsiI CCGC 4 cut(s) 105, 228, 609, 1006
SspMI CTAG 3 cut(s) 192, 455, 962
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 6 cut(s) 264, 436, 567, 730, 783, 1045
TaaI ACNGT 2 cut(s) 117, 238
TaiI ACGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 548, 585
TatI WGTACW 2 cut(s) 498, 1023
TfiI GAWTC 4 cut(s) 260, 682, 743, 958
TscAI CASTG 2 cut(s) 120, 410
TseI GCWGC 1 cut(s) 348
TspDTI ATGAA 2 cut(s) 234, 561
TspRI CASTG 2 cut(s) 120, 410
Van91I CCANNNNNTGG 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 2 cut(s) 548, 585
XspI CTAG 3 cut(s) 192, 455, 962
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.