RchiOBHm_Chr2g0104801

Ribosomal protein TL5, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012519
Physical Location & Seq
Forward (+)
16105901 .. 16108165
2265 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGGTGAGGTGGTGGCGCTCAGCCGGCGGAGGCCTCCGGTCGCTTCTGTCAAACCCTCCCTCCGCCTCACACCCCTCTCTCCAATCCCAAGCTTCTCTCTACCACACCATCCAAGCCATCCCCAGAGAGTTCACCGGAAACCGAATCTCAGCCAAAGACAGAGCCCAGGGTCGAATCCCCGCCGTCGTCTTCGCTCAGCCTCCACCGGAAAACAGCCCCAAGCCCACCGGCCGGTACATCGCCAGAAAACACTTGCTGACCACCGAGAGGAAGCAGATTCAGGCCATTCTCAACTCCATTGAGCTCCCGTATTTCTGCTCCACCACATTTCCGCTCCAGATCCGAGCCGGGTCCGGGTCGTCGGTTCTGCTCGAATCCGGAAACGTCCTACCTGTCAAGATTCATAGGGACGAAGAGAGTGGGAAGATACTGAATTTGGTGTTTGTTTGGGCCGATGAGGGCTCCGAGTTGAAGGTGGATGTTCCGGTTACTTTTAAAGGTGAAGATGTTTGCCCAGGTCTCAAAAAAGGCGGCCACCTGAACAAAATTAGAACAAGTCTAAAGTACCTTTGCCCAGCCGAACATATTCCTCCCAAAATTGAGGTGGATATCAGCAATCTAGATATAGGAGATAGGGTGTGCCTTCCAGATGTTAAGGTTCATCCATCCCTGAAGCTTCTGAGCAAGAACGATGTCATGCCTATATGTAAGATAGTTGCAACTAAGTTGGAAACCCCAGAACCGGCAGGAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L25p Ribosomal_TL5_C

Protein Analysis

251

Amino Acids

27.51

Weight (kDa)

9.3

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_TL5_C PF14693 157 - 241 3.7e-22 Ribosomal protein TL5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66860
fragaria_vesca FvH4_1g15520
malus_domestica MD02G1167000.v1.1 MD15G1279600.v1.1
prunus_persica Prupe.7G137800_v2.0.a1 Prupe.7G137800_v2.0.a1 Prupe.7G137800_v2.0.a1
pyrus_communis pycom02g13450
rosa_chinensis RchiOBHm_Chr2g0104801
rosa_laevigata RLG00000017358
rosa_multiflora Rmu_ssc0000030.1_g000001
rosa_rugosa Rorug02G0123000
rosa_samantha Rh2AG172900 Rh2BG180500 Rh2CG178100 Rh2DG179100
rosa_wichuraiana Rw0G008670 Rw2G013510 Rw2G013590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 334
AccIII TCCGGA 1 cut(s) 377
AciI CCGC 5 cut(s) 27, 63, 180, 332, 531
AclWI GGATC 1 cut(s) 334
AcoI YGGCCR 2 cut(s) 229, 532
AcsI RAATTY 1 cut(s) 433
AcuI CTGAAG 1 cut(s) 692
AfaI GTAC 2 cut(s) 236, 566
AfiI CCNNNNNNNGG 4 cut(s) 231, 267, 354, 742
AgsI TTSAA 1 cut(s) 472
AjnI CCWGG 2 cut(s) 165, 514
AluBI AGCT 3 cut(s) 92, 304, 676
AluI AGCT 3 cut(s) 92, 304, 676
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 524
AlwI GGATC 1 cut(s) 334
Aor13HI TCCGGA 1 cut(s) 377
AoxI GGCC 5 cut(s) 31, 229, 282, 450, 532
ApoI RAATTY 1 cut(s) 433
Asp700I GAANNNNTTC 1 cut(s) 585
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 2 cut(s) 351, 450
AsuC2I CCSGG 2 cut(s) 349, 355
AsuHPI GGTGA 3 cut(s) 16, 124, 512
AvaII GGWCC 1 cut(s) 351
BanII GRGCYC 3 cut(s) 166, 306, 464
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 306
BccI CCATC 3 cut(s) 116, 125, 673
BceAI ACGGC 1 cut(s) 167
BciT130I CCWGG 2 cut(s) 167, 516
BcnI CCSGG 2 cut(s) 349, 355
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 1 cut(s) 620
BfoI RGCGCY 1 cut(s) 19
BisI GCNGC 1 cut(s) 532
BlpI GCTNAGC 2 cut(s) 19, 195
BlsI GCNGC 1 cut(s) 533
Bme1390I CCNGG 4 cut(s) 167, 349, 355, 516
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 2 cut(s) 351, 450
BmiI GGNNCC 2 cut(s) 352, 463
BmrFI CCNGG 4 cut(s) 167, 349, 355, 516
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 320
Bpu1102I GCTNAGC 2 cut(s) 19, 195
BpuMI CCSGG 2 cut(s) 349, 355
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 3 cut(s) 165, 166, 514
BsaWI WCCGGW 5 cut(s) 36, 134, 205, 377, 484
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 621, 651
Bsc4I CCNNNNNNNGG 4 cut(s) 231, 267, 354, 742
Bse118I RCCGGY 4 cut(s) 23, 227, 231, 742
BseAI TCCGGA 1 cut(s) 377
BseBI CCWGG 2 cut(s) 167, 516
BseDI CCNNGG 3 cut(s) 165, 166, 514
BseGI GGATG 5 cut(s) 108, 117, 484, 661, 665
BseLI CCNNNNNNNGG 4 cut(s) 231, 267, 354, 742
BseMII CTCAG 4 cut(s) 33, 162, 209, 671
BseX3I CGGCCG 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 574
Bsh1285I CGRYCG 2 cut(s) 41, 232
BshFI GGCC 5 cut(s) 33, 231, 284, 452, 534
BsiEI CGRYCG 2 cut(s) 41, 232
BsiHKAI GWGCWC 1 cut(s) 306
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 4 cut(s) 231, 267, 354, 742
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 5 cut(s) 33, 231, 284, 452, 534
Bso31I GGTCTC 1 cut(s) 524
Bsp1286I GDGCHC 3 cut(s) 166, 306, 464
Bsp13I TCCGGA 1 cut(s) 377
Bsp143I GATC 1 cut(s) 339
Bsp1720I GCTNAGC 2 cut(s) 19, 195
BspACI CCGC 5 cut(s) 27, 63, 180, 332, 531
BspANI GGCC 5 cut(s) 33, 231, 284, 452, 534
BspCNI CTCAG 4 cut(s) 32, 161, 208, 672
BspEI TCCGGA 1 cut(s) 377
BspLI GGNNCC 2 cut(s) 352, 463
BspPI GGATC 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 334
BsrFI RCCGGY 4 cut(s) 23, 227, 231, 742
BssAI RCCGGY 4 cut(s) 23, 227, 231, 742
BssECI CCNNGG 3 cut(s) 165, 166, 514
BssMI GATC 1 cut(s) 339
Bst2UI CCWGG 2 cut(s) 167, 516
Bst6I CTCTTC 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 5 cut(s) 19, 148, 195, 680, 723
BstF5I GGATG 5 cut(s) 108, 117, 484, 661, 665
BstH2I RGCGCY 1 cut(s) 19
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 342
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 1 cut(s) 339
BstMCI CGRYCG 2 cut(s) 41, 232
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 2 cut(s) 167, 516
BstSCI CCNGG 4 cut(s) 165, 347, 353, 514
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 5 cut(s) 33, 231, 284, 452, 534
BtgZI GCGATG 1 cut(s) 223
BtsCI GGATG 5 cut(s) 108, 117, 484, 661, 665
Cac8I GCNNGC 1 cut(s) 25
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 4 cut(s) 23, 227, 231, 742
Cfr13I GGNCC 2 cut(s) 351, 450
Csp6I GTAC 2 cut(s) 235, 565
CviAII CATG 1 cut(s) 697
CviQI GTAC 2 cut(s) 235, 565
DdeI CTNAG 5 cut(s) 19, 148, 195, 680, 723
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
DraI TTTAAA 1 cut(s) 496
EaeI YGGCCR 2 cut(s) 229, 532
EagI CGGCCG 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
EciI GGCGGA 2 cut(s) 42, 52
Ecl136II GAGCTC 1 cut(s) 304
EclXI CGGCCG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 3 cut(s) 166, 306, 464
Eco31I GGTCTC 1 cut(s) 524
Eco32I GATATC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 351
Eco52I CGGCCG 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 165, 514
EcoRV GATATC 1 cut(s) 610
EcoT38I GRGCYC 3 cut(s) 166, 306, 464
FaeI CATG 1 cut(s) 700
FaiI YATR 6 cut(s) 405, 585, 626, 698, 704, 706
FaqI GGGAC 1 cut(s) 422
FatI CATG 1 cut(s) 696
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 532
FokI GGATG 5 cut(s) 95, 104, 491, 648, 652
FriOI GRGCYC 3 cut(s) 166, 306, 464
Fsp4HI GCNGC 1 cut(s) 532
FspBI CTAG 1 cut(s) 620
GlaI GCGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 532
GsaI CCCAGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 1 cut(s) 19
HaeIII GGCC 5 cut(s) 33, 231, 284, 452, 534
HhaI GCGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 700
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 90, 674
HinfI GANTC 5 cut(s) 144, 174, 277, 374, 400
HphI GGTGA 3 cut(s) 16, 124, 512
Hpy166II GTNNAC 1 cut(s) 132
Hpy188I TCNGA 3 cut(s) 344, 466, 681
Hpy188III TCNNGA 5 cut(s) 337, 378, 397, 620, 647
Hpy8I GTNNAC 1 cut(s) 132
Hpy99I CGWCG 2 cut(s) 188, 364
HpyAV CCTTC 2 cut(s) 466, 653
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 1 cut(s) 719
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 5 cut(s) 19, 148, 195, 680, 723
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 1 cut(s) 700
HspAI GCGC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 377
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 4 cut(s) 309, 323, 339, 467
MaeI CTAG 1 cut(s) 620
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 487
MalI GATC 1 cut(s) 341
MbiI CCGCTC 1 cut(s) 334
MboI GATC 1 cut(s) 339
MboII GAAGA 4 cut(s) 181, 425, 436, 515
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 3 cut(s) 166, 306, 464
MluCI AATT 3 cut(s) 433, 546, 597
MmeI TCCRAC 1 cut(s) 708
MroI TCCGGA 1 cut(s) 377
MroNI GCCGGC 1 cut(s) 23
MroXI GAANNNNTTC 1 cut(s) 585
MseI TTAA 3 cut(s) 495, 654, 754
MspR9I CCNGG 4 cut(s) 167, 349, 355, 516
MvaI CCWGG 2 cut(s) 167, 516
MwoI GCNNNNNNNGC 1 cut(s) 24
NaeI GCCGGC 1 cut(s) 25
NciI CCSGG 2 cut(s) 349, 355
NdeII GATC 1 cut(s) 339
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 1 cut(s) 700
NlaIV GGNNCC 2 cut(s) 352, 463
PasI CCCWGGG 1 cut(s) 166
PceI AGGCCT 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 25
PdmI GAANNNNTTC 1 cut(s) 585
PfeI GAWTC 5 cut(s) 144, 174, 277, 374, 400
PkrI GCNGC 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 165, 514
PspFI CCCAGC 1 cut(s) 574
PspGI CCWGG 2 cut(s) 165, 514
PspN4I GGNNCC 2 cut(s) 352, 463
PspPI GGNCC 2 cut(s) 351, 450
PsuI RGATCY 1 cut(s) 339
RsaI GTAC 2 cut(s) 236, 566
RsaNI GTAC 2 cut(s) 235, 565
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 3 cut(s) 495, 654, 754
SatI GCNGC 1 cut(s) 532
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 2 cut(s) 351, 450
ScrFI CCNGG 4 cut(s) 167, 349, 355, 516
SduI GDGCHC 3 cut(s) 166, 306, 464
SinI GGWCC 1 cut(s) 351
Sse9I AATT 3 cut(s) 433, 546, 597
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 5 cut(s) 27, 63, 180, 332, 531
SspMI CTAG 1 cut(s) 620
SstI GAGCTC 1 cut(s) 306
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 4 cut(s) 165, 347, 353, 514
TaiI ACGT 1 cut(s) 387
TaqI TCGA 2 cut(s) 172, 372
TasI AATT 3 cut(s) 433, 546, 597
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 5 cut(s) 144, 174, 277, 374, 400
Tru1I TTAA 3 cut(s) 495, 654, 754
Tru9I TTAA 3 cut(s) 495, 654, 754
TspDTI ATGAA 2 cut(s) 392, 650
VpaK11BI GGWCC 1 cut(s) 351
XapI RAATTY 1 cut(s) 433
XbaI TCTAGA 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 601
XmnI GAANNNNTTC 1 cut(s) 585
XspI CTAG 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.