Rorug02G0123000

Ribosomal protein TL5, C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012519
Physical Location & Seq
Reverse (-)
10587460 .. 10588458
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0123000.1

Sequence Viewer

Length: 927 bp
ATGGAGCCGATGTGGGAAACCATGCCGCCGATGTGGGACGCGGTGGGGTCTACCATCCCTTTTAGTGGAGGTAGGGTTGAAGATGACAGTGAAGATAATGGTGTAACCCGTCCTTTTTTTGAGATTTTCAGTATTGTAATTCCTGGAAATAGTATTCCTGGGTGGTTCAAAAATCGCAGGCAGGGAGACTCAGTGAGACAGGCGCCACCAGATTGTTCTTCATGTAGAAGTAAGTGGATCGGGTTTGCTCTATGTGTTATTTTTGGGGCTGAAGAAAACCCGAGTGCCTTTGGTGAAGATCATGCAAAGACAATTTCGTGTTCTTGGAAGCCTGGTCTTTTTATACCCGCCAGTTTCAGTTTAAATCTAAACCATGTAGTTAAGTCAGATCACCTTTGTGTATTCCTTTTGCCTTCGAAGCATTATCCGGAGTATACTAATTCAACGGATCCAAAATTCATCGATTTTTTTTTCGGAGCCGACTCAGGTTTGAAGGTGAAGAAGTGTGGTGTCCGTACTCTCTACCAGAAATTAGTAGACCTTGACGAGGTAGTGGAAGACCTTGACGAGCTAGTGGAAGACCTTGACGATCTAGAGGAAGAGTTTTTCGAGCAAGAAATGGAATACCTTGCCTTAAGAACAGACCAATACAGTAGAAGCATTCGTATGGTGCTGGAACCCCCTCCTTTTTATGAGATGTTCAGTAGTGTAATTCCTGGAAATGACATTCCTGTGTGGTTCAAAACTAGAAGGAAGCCTGGAAATGACATTCCTGTGTGGTTCGAAACTAGAAGGAAGCGAGCAGACTCAGTGAGCCAAGTGCGCCCATGTCTTTCATGTTGGAATACGTGGATAGGGTTCGCTTTCTGTGTTCTTTTTGAAGCTGAAGAAATCTCAGGTGAATTTCCAAGTGTTGTGCTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L25p Ribosomal_TL5_C

Protein Analysis

308

Amino Acids

35.22

Weight (kDa)

4.71

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 47 - 177 3.6e-09 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66860
fragaria_vesca FvH4_1g15520
malus_domestica MD02G1167000.v1.1 MD15G1279600.v1.1
prunus_persica Prupe.7G137800_v2.0.a1 Prupe.7G137800_v2.0.a1 Prupe.7G137800_v2.0.a1
pyrus_communis pycom02g13450
rosa_chinensis RchiOBHm_Chr2g0104801
rosa_laevigata RLG00000017358
rosa_multiflora Rmu_ssc0000030.1_g000001
rosa_rugosa Rorug02G0123000
rosa_samantha Rh2AG172900 Rh2BG180500 Rh2CG178100 Rh2DG179100
rosa_wichuraiana Rw0G008670 Rw2G013510 Rw2G013590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AccI GTMKAC 3 cut(s) 50, 434, 537
AccII CGCG 1 cut(s) 41
AccIII TCCGGA 1 cut(s) 427
AciI CCGC 3 cut(s) 26, 41, 348
AclWI GGATC 3 cut(s) 245, 443, 456
AcsI RAATTY 2 cut(s) 455, 902
AcuI CTGAAG 2 cut(s) 291, 906
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 1 cut(s) 517
AfiI CCNNNNNNNGG 2 cut(s) 65, 547
AflII CTTAAG 1 cut(s) 634
AgsI TTSAA 6 cut(s) 80, 169, 444, 493, 742, 881
AjnI CCWGG 5 cut(s) 142, 157, 331, 715, 757
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 2 cut(s) 571, 884
AluI AGCT 2 cut(s) 571, 884
Alw21I GWGCWC 1 cut(s) 921
Alw26I GTCTC 2 cut(s) 180, 190
AlwI GGATC 3 cut(s) 245, 443, 456
Ama87I CYCGRG 1 cut(s) 280
Aor13HI TCCGGA 1 cut(s) 427
ApoI RAATTY 2 cut(s) 455, 902
AspLEI GCGC 2 cut(s) 205, 825
AsuHPI GGTGA 4 cut(s) 305, 383, 508, 911
AsuII TTCGAA 2 cut(s) 416, 783
AvaI CYCGRG 1 cut(s) 280
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 202
BbsI GAAGAC 2 cut(s) 564, 585
Bbv12I GWGCWC 1 cut(s) 921
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 5 cut(s) 144, 159, 333, 717, 759
BcoDI GTCTC 2 cut(s) 180, 190
BfaI CTAG 4 cut(s) 572, 593, 747, 789
BfoI RGCGCY 1 cut(s) 206
BfrI CTTAAG 1 cut(s) 634
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 5 cut(s) 144, 159, 333, 717, 759
BmeT110I CYCGRG 1 cut(s) 280
BmiI GGNNCC 5 cut(s) 6, 204, 450, 478, 678
BmrFI CCNGG 5 cut(s) 144, 159, 333, 717, 759
BpiI GAAGAC 2 cut(s) 564, 585
Bpu14I TTCGAA 2 cut(s) 416, 783
Bsa29I ATCGAT 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 849
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 5 cut(s) 26, 60, 90, 177, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 547
Bse1I ACTGG 1 cut(s) 351
BseAI TCCGGA 1 cut(s) 427
BseBI CCWGG 5 cut(s) 144, 159, 333, 717, 759
BseCI ATCGAT 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 2 cut(s) 65, 547
BseMII CTCAG 4 cut(s) 204, 498, 822, 909
BseNI ACTGG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 202
BshVI ATCGAT 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 921
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 1 cut(s) 428
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 65, 547
BsmAI GTCTC 2 cut(s) 180, 190
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 660
BsoBI CYCGRG 1 cut(s) 280
Bsp119I TTCGAA 2 cut(s) 416, 783
Bsp1286I GDGCHC 1 cut(s) 921
Bsp13I TCCGGA 1 cut(s) 427
Bsp143I GATC 5 cut(s) 237, 298, 388, 448, 589
BspACI CCGC 3 cut(s) 26, 41, 348
BspCNI CTCAG 4 cut(s) 203, 497, 821, 908
BspDI ATCGAT 1 cut(s) 462
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 5 cut(s) 6, 204, 450, 478, 678
BspPI GGATC 3 cut(s) 245, 443, 456
BspT104I TTCGAA 2 cut(s) 416, 783
BspT107I GGYRCC 1 cut(s) 202
BspTI CTTAAG 1 cut(s) 634
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 5 cut(s) 237, 298, 388, 448, 589
BssNAI GTATAC 1 cut(s) 435
BssNI GRCGYC 1 cut(s) 203
Bst1107I GTATAC 1 cut(s) 435
Bst2UI CCWGG 5 cut(s) 144, 159, 333, 717, 759
Bst4CI ACNGT 2 cut(s) 89, 653
Bst6I CTCTTC 1 cut(s) 594
BstACI GRCGYC 1 cut(s) 203
BstAFI CTTAAG 1 cut(s) 634
BstBAI YACGTR 1 cut(s) 849
BstBI TTCGAA 2 cut(s) 416, 783
BstC8I GCNNGC 2 cut(s) 179, 801
BstDEI CTNAG 4 cut(s) 190, 484, 808, 895
BstENI CCTNNNNNAGG 1 cut(s) 545
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 2 cut(s) 205, 825
BstKTI GATC 5 cut(s) 240, 301, 391, 451, 592
BstMAI GTCTC 2 cut(s) 180, 190
BstMBI GATC 5 cut(s) 237, 298, 388, 448, 589
BstMWI GCNNNNNNNGC 2 cut(s) 418, 822
BstNI CCWGG 5 cut(s) 144, 159, 333, 717, 759
BstSCI CCNGG 5 cut(s) 142, 157, 331, 715, 757
BstUI CGCG 1 cut(s) 41
BstV2I GAAGAC 2 cut(s) 564, 585
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 435
Bsu15I ATCGAT 1 cut(s) 462
BsuTUI ATCGAT 1 cut(s) 462
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 3 cut(s) 94, 198, 816
Cac8I GCNNGC 2 cut(s) 179, 801
CfoI GCGC 2 cut(s) 205, 825
ClaI ATCGAT 1 cut(s) 462
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 516
CviAII CATG 6 cut(s) 22, 222, 302, 374, 828, 837
CviJI RGCY 8 cut(s) 7, 269, 331, 479, 571, 757, 816, 884
CviKI_1 RGCY 8 cut(s) 7, 269, 331, 479, 571, 757, 816, 884
CviQI GTAC 1 cut(s) 516
DdeI CTNAG 4 cut(s) 190, 484, 808, 895
DinI GGCGCC 1 cut(s) 204
DpnI GATC 5 cut(s) 239, 300, 390, 450, 591
DpnII GATC 5 cut(s) 237, 298, 388, 448, 589
DraI TTTAAA 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Eco57I CTGAAG 2 cut(s) 291, 906
Eco88I CYCGRG 1 cut(s) 280
EcoNI CCTNNNNNAGG 1 cut(s) 545
EcoRII CCWGG 5 cut(s) 142, 157, 331, 715, 757
EgeI GGCGCC 1 cut(s) 204
EheI GGCGCC 1 cut(s) 204
FaeI CATG 6 cut(s) 25, 225, 305, 377, 831, 840
FaqI GGGAC 1 cut(s) 50
FatI CATG 6 cut(s) 21, 221, 301, 373, 827, 836
FauI CCCGC 1 cut(s) 355
FblI GTMKAC 3 cut(s) 50, 434, 537
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 4 cut(s) 572, 593, 747, 789
GlaI GCGC 2 cut(s) 204, 824
GluI GCNGC 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 206
HapII CCGG 1 cut(s) 428
HgaI GACGC 1 cut(s) 47
HhaI GCGC 2 cut(s) 205, 825
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 6 cut(s) 25, 225, 305, 377, 831, 840
Hin6I GCGC 2 cut(s) 203, 823
HinP1I GCGC 2 cut(s) 203, 823
HinfI GANTC 3 cut(s) 188, 482, 806
HpaII CCGG 1 cut(s) 428
HphI GGTGA 4 cut(s) 305, 383, 508, 911
Hpy166II GTNNAC 3 cut(s) 51, 435, 538
Hpy188I TCNGA 2 cut(s) 388, 476
Hpy188III TCNNGA 2 cut(s) 428, 593
Hpy8I GTNNAC 3 cut(s) 51, 435, 538
HpyAV CCTTC 4 cut(s) 423, 487, 744, 786
HpyCH4III ACNGT 2 cut(s) 89, 653
HpyCH4IV ACGT 1 cut(s) 848
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 418, 822
HpyF3I CTNAG 4 cut(s) 190, 484, 808, 895
HpySE526I ACGT 1 cut(s) 848
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 6 cut(s) 25, 225, 305, 377, 831, 840
HspAI GCGC 2 cut(s) 203, 823
KasI GGCGCC 1 cut(s) 202
Kpn2I TCCGGA 1 cut(s) 427
Kzo9I GATC 5 cut(s) 237, 298, 388, 448, 589
LmnI GCTCC 3 cut(s) 4, 476, 924
MaeI CTAG 4 cut(s) 572, 593, 747, 789
MaeII ACGT 1 cut(s) 848
MaeIII GTNAC 1 cut(s) 103
MalI GATC 5 cut(s) 239, 300, 390, 450, 591
MboI GATC 5 cut(s) 237, 298, 388, 448, 589
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 921
MluCI AATT 7 cut(s) 138, 312, 439, 455, 530, 711, 902
Mly113I GGCGCC 1 cut(s) 203
MlyI GAGTC 3 cut(s) 182, 476, 800
MmeI TCCRAC 1 cut(s) 821
MnlI CCTC 4 cut(s) 62, 541, 589, 693
MroI TCCGGA 1 cut(s) 427
MseI TTAA 3 cut(s) 362, 381, 635
MslI CAYNNNNRTG 4 cut(s) 396, 665, 731, 773
MspCI CTTAAG 1 cut(s) 634
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 5 cut(s) 144, 159, 333, 717, 759
Mva1269I GAATGC 1 cut(s) 660
MvaI CCWGG 5 cut(s) 144, 159, 333, 717, 759
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 418, 822
NarI GGCGCC 1 cut(s) 203
NdeII GATC 5 cut(s) 237, 298, 388, 448, 589
NlaIII CATG 6 cut(s) 25, 225, 305, 377, 831, 840
NlaIV GGNNCC 5 cut(s) 6, 204, 450, 478, 678
NspV TTCGAA 2 cut(s) 416, 783
OliI CACNNNNGTG 1 cut(s) 396
PctI GAATGC 1 cut(s) 660
PfoI TCCNGGA 2 cut(s) 142, 715
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 3 cut(s) 182, 476, 800
PluTI GGCGCC 1 cut(s) 206
PpsI GAGTC 3 cut(s) 182, 476, 800
Ppu21I YACGTR 1 cut(s) 849
Psp6I CCWGG 5 cut(s) 142, 157, 331, 715, 757
PspGI CCWGG 5 cut(s) 142, 157, 331, 715, 757
PspN4I GGNNCC 5 cut(s) 6, 204, 450, 478, 678
PsuI RGATCY 1 cut(s) 448
RsaI GTAC 1 cut(s) 517
RsaNI GTAC 1 cut(s) 516
RseI CAYNNNNRTG 4 cut(s) 396, 665, 731, 773
SaqAI TTAA 3 cut(s) 362, 381, 635
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 5 cut(s) 237, 298, 388, 448, 589
SchI GAGTC 3 cut(s) 182, 476, 800
ScrFI CCNGG 5 cut(s) 144, 159, 333, 717, 759
SduI GDGCHC 1 cut(s) 921
SfoI GGCGCC 1 cut(s) 204
SfuI TTCGAA 2 cut(s) 416, 783
SmiMI CAYNNNNRTG 4 cut(s) 396, 665, 731, 773
SmlI CTYRAG 1 cut(s) 634
SmoI CTYRAG 1 cut(s) 634
Sse9I AATT 7 cut(s) 138, 312, 439, 455, 530, 711, 902
SsiI CCGC 3 cut(s) 26, 41, 348
SspDI GGCGCC 1 cut(s) 202
SspMI CTAG 4 cut(s) 572, 593, 747, 789
StyD4I CCNGG 5 cut(s) 142, 157, 331, 715, 757
TaaI ACNGT 2 cut(s) 89, 653
TaiI ACGT 1 cut(s) 851
TaqI TCGA 4 cut(s) 416, 462, 609, 783
TasI AATT 7 cut(s) 138, 312, 439, 455, 530, 711, 902
TauI GCSGC 1 cut(s) 28
Tru1I TTAA 3 cut(s) 362, 381, 635
Tru9I TTAA 3 cut(s) 362, 381, 635
TscAI CASTG 3 cut(s) 94, 198, 816
TspDTI ATGAA 3 cut(s) 210, 448, 825
TspGWI ACGGA 2 cut(s) 461, 503
TspRI CASTG 3 cut(s) 94, 198, 816
Vha464I CTTAAG 1 cut(s) 634
XagI CCTNNNNNAGG 1 cut(s) 545
XapI RAATTY 2 cut(s) 455, 902
XbaI TCTAGA 1 cut(s) 592
XmiI GTMKAC 3 cut(s) 50, 434, 537
XspI CTAG 4 cut(s) 572, 593, 747, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.