Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018973

Physical Location & Seq

Genomic Coordinates Reverse (-)

22387307 .. 22387719

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAATTCCTTCAGCGTTGTATATTTCCTCGCTGTACTTTCAGCATGCCAGATGTTGTCTATTGGGCCATATTTGTGCACACTCTTCATTCCCTGGAGACACCATTTTTTAACACAGTCAACCACATGGATGTTCTTATATGTAGAACCTTACAGTCTATGATATGTTGCTGCACTGAATCTGAAGTTGGTAGACTGGGGAAGTTTCTTTGTGAGACCTTGAAAATTGCTTACTATTTGAAGAGTGAAGGATCTATTTATGAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990428

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

THOC2_N Tho2 Thoc2

Protein Analysis

89

Amino Acids

10.46

Weight (kDa)

6.25

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho2	PF11262	2 - 89	2.8e-25	Transcription factor/nuclear export subunit protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110801
rosa_roxburghii	Rroxscaffold_5G00335760 Rroxscaffold_7G00187890
rosa_rugosa	Rorug03G0290400 Rorug04G0001100 Rorug06G0100500 Rorug06G0369100
rosa_samantha	Rh2AG221800 Rh2CG224500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	37
AfeI	AGCGCT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	223, 241
AjnI	CCWGG	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	92, 209
Alw44I	GTGCAC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	259
Aor51HI	AGCGCT	1 cut(s)	266
AoxI	GGCC	1 cut(s)	66
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	92, 209
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	92, 209
BsnI	GGCC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	118, 156
Bst6I	CTCTTC	2 cut(s)	90, 236
BstC8I	GCNNGC	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	2 cut(s)	92, 209
BstMBI	GATC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	46, 127
CviJI	RGCY	1 cut(s)	68
CviKI_1	RGCY	1 cut(s)	68
CviQI	GTAC	1 cut(s)	36
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	90, 236
EarI	CTCTTC	2 cut(s)	90, 236
Eco31I	GGTCTC	1 cut(s)	209
Eco47III	AGCGCT	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	49, 130
FaiI	YATR	9 cut(s)	23, 47, 71, 128, 140, 142, 161, 166, 261
FatI	CATG	2 cut(s)	45, 126
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	172
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	172
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	49, 130
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	79, 121, 194
Hpy188I	TCNGA	1 cut(s)	184
Hpy8I	GTNNAC	3 cut(s)	79, 121, 194
HpyAV	CCTTC	2 cut(s)	20, 242
HpyCH4III	ACNGT	2 cut(s)	118, 156
HpyCH4V	TGCA	2 cut(s)	79, 174
Hsp92II	CATG	2 cut(s)	49, 130
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	4 cut(s)	63, 80, 107, 182
Lsp1109I	GCAGC	1 cut(s)	158
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	2 cut(s)	77, 253
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	5, 225
MnlI	CCTC	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	2 cut(s)	74, 129
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	2 cut(s)	49, 130
NspI	RCATGY	1 cut(s)	49
PaeI	GCATGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	2 cut(s)	74, 129
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	2 cut(s)	152, 221
SgeI	CNNG	8 cut(s)	42, 58, 62, 106, 107, 139, 209, 232
SmiMI	CAYNNNNRTG	2 cut(s)	74, 129
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	5, 225
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	118, 156
TasI	AATT	2 cut(s)	5, 225
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	181
VneI	GTGCAC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.