Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0018973

Physical Location & Seq

Genomic Coordinates Reverse (-)

13371380 .. 13372852

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAAGCTCTTCCACAACATGAAAGGGTCATCCTTGTTGGTCATAGCCTTGGCGGGTTGGCCATTTCTCAAGCCATGGAGAGGTTTCCGAGTAAGATTTCTGTAGCTGTTTTTGTTGCTGCTTTGATGCCTGGTCCGAACCTCAACATTTCCACTCTTCAACAAGAGTCATTTCGGCGACAAGATTCTCAATTGGACAGCCGATTTACATATGACCAAGGGCCAAACAACCCTCCAACAACTTTCATCTTCGGCCCCGTGTATTTGGCAACTAAGGTCTACCAACTTAGCCGTAAAGAGGATATAGAACTGGCCACTATGTTAATGAGACCACTACGTTTGTTTAGTGAAGAAGACATGTCTAAGGAACTAAAGCTGTCCAAGGAGAAATACGGGTCGGTCAATCGGGTTTTCATAATCTCAGATGAAGATTTGGTCGGAAGGAAAGATTTTCAACTGTGGGTGATTGAGAGAAATCGCCCAAATCGTGTGGTGGAAATGAGAGGATCAGATCACATGGTCATGATGTCAAAGCCATTAGAGCTTTGGGGCTTCTTCAAAACCTTGCTACAAATTATTCGTAACTATTCAGTAATTATTGTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990428

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

THOC2_N Tho2 Thoc2

Protein Analysis

202

Amino Acids

23.28

Weight (kDa)

9.15

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	1 - 177	7.8e-07	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	7 - 181	2.5e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110801
rosa_roxburghii	Rroxscaffold_5G00335760 Rroxscaffold_7G00187890
rosa_rugosa	Rorug03G0290400 Rorug04G0001100 Rorug06G0100500 Rorug06G0369100
rosa_samantha	Rh2AG221800 Rh2CG224500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	2 cut(s)	60, 312
AfiI	CCNNNNNNNGG	2 cut(s)	81, 298
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	3 cut(s)	161, 455, 559
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	4 cut(s)	8, 107, 376, 544
AluI	AGCT	4 cut(s)	8, 107, 376, 544
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	4 cut(s)	60, 221, 253, 312
ApeKI	GCWGC	1 cut(s)	119
Asp700I	GAANNNNTTC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	134, 221, 254
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	2 cut(s)	62, 314
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	322
BfmI	CTRYAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	3 cut(s)	134, 221, 254
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	4 cut(s)	49, 75, 217, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 298
Bse1I	ACTGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	4 cut(s)	49, 75, 217, 381
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	81, 298
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	4 cut(s)	62, 223, 255, 314
BslI	CCNNNNNNNGG	2 cut(s)	81, 298
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	4 cut(s)	62, 223, 255, 314
Bso31I	GGTCTC	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	506, 511
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	4 cut(s)	62, 223, 255, 314
BspCNI	CTCAG	1 cut(s)	434
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	4 cut(s)	49, 75, 217, 381
BssMI	GATC	2 cut(s)	506, 511
BssT1I	CCWWGG	4 cut(s)	49, 75, 217, 381
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	459
Bst6I	CTCTTC	2 cut(s)	15, 162
BstDEI	CTNAG	4 cut(s)	273, 287, 363, 421
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	30
BstKTI	GATC	2 cut(s)	509, 514
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	2 cut(s)	506, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	541
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	360
BsuRI	GGCC	4 cut(s)	62, 223, 255, 314
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	30
CciI	TCATGA	1 cut(s)	522
Cfr13I	GGNCC	3 cut(s)	134, 221, 254
CspCI	CAANNNNNGTGG	4 cut(s)	321, 356, 471, 506
CviAII	CATG	5 cut(s)	20, 76, 358, 517, 523
DdeI	CTNAG	4 cut(s)	273, 287, 363, 421
DpnI	GATC	2 cut(s)	508, 513
DpnII	GATC	2 cut(s)	506, 511
EaeI	YGGCCR	2 cut(s)	60, 312
Eam1104I	CTCTTC	2 cut(s)	15, 162
EarI	CTCTTC	2 cut(s)	15, 162
Eco130I	CCWWGG	4 cut(s)	49, 75, 217, 381
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	4 cut(s)	49, 75, 217, 381
ErhI	CCWWGG	4 cut(s)	49, 75, 217, 381
FaeI	CATG	5 cut(s)	23, 79, 361, 520, 526
FatI	CATG	5 cut(s)	19, 75, 357, 516, 522
FauI	CCCGC	1 cut(s)	47
FauNDI	CATATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	4 cut(s)	62, 223, 255, 314
Hin1II	CATG	5 cut(s)	23, 79, 361, 520, 526
HinfI	GANTC	2 cut(s)	167, 185
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	5 cut(s)	90, 138, 424, 440, 511
Hpy188III	TCNNGA	1 cut(s)	523
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4IV	ACGT	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	541
HpyF3I	CTNAG	4 cut(s)	273, 287, 363, 421
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	5 cut(s)	23, 79, 361, 520, 526
Kzo9I	GATC	2 cut(s)	506, 511
LguI	GCTCTTC	1 cut(s)	15
LpnPI	CCDG	3 cut(s)	117, 144, 296
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	117
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	2 cut(s)	508, 513
MboI	GATC	2 cut(s)	506, 511
MboII	GAAGA	6 cut(s)	149, 241, 362, 365, 440, 547
MfeI	CAATTG	1 cut(s)	191
MlsI	TGGCCA	2 cut(s)	62, 314
MluCI	AATT	3 cut(s)	191, 573, 594
MluNI	TGGCCA	2 cut(s)	62, 314
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	2 cut(s)	260, 418
MnlI	CCTC	5 cut(s)	75, 152, 243, 292, 497
Mox20I	TGGCCA	2 cut(s)	62, 314
MroXI	GAANNNNTTC	1 cut(s)	9
MscI	TGGCCA	2 cut(s)	62, 314
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	521
Msp20I	TGGCCA	2 cut(s)	62, 314
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	541
NcoI	CCATGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	2 cut(s)	506, 511
NlaIII	CATG	5 cut(s)	23, 79, 361, 520, 526
NlaIV	GGNNCC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	361
PagI	TCATGA	1 cut(s)	522
PciI	ACATGT	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	484
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PscI	ACATGT	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	3 cut(s)	134, 221, 254
RseI	CAYNNNNRTG	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	506, 511
Sau96I	GGNCC	3 cut(s)	134, 221, 254
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	132
SetI	ASST	9 cut(s)	10, 86, 109, 144, 279, 340, 378, 546, 566
SfaNI	GCATC	1 cut(s)	117
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	191, 573, 594
SsiI	CCGC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	4 cut(s)	49, 75, 217, 381
TaaI	ACNGT	1 cut(s)	459
TaiI	ACGT	1 cut(s)	340
TaqII	GACCGA	1 cut(s)	388
TasI	AATT	3 cut(s)	191, 573, 594
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	4 cut(s)	36, 235, 403, 441
VpaK11BI	GGWCC	1 cut(s)	134
XceI	RCATGY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	543
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.