Rroxscaffold_7G00187890

Protein of unknown function (DUF295)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018973
Physical Location & Seq
Forward (+)
27305448 .. 27307985
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187890.1

Sequence Viewer

Length: 561 bp
ATGATTGAGACTCGTTCGGGGAGTAAGAGAAACAGAATACAAAACATCTCCGCCATCGAGCAAACTTGCTATGGGTGTTGGCAGCATCCACCAGAAGACATCATGGAGAAAATTTTACAACATTTGAGATTAGATGATCGTTTACGCTTTAAGCTTCGTCTGCAAGTATTGGCAGTCATTTGCTACTCGAAGAGATATGCCCAGTGGTCCACAACTCCCATGGTTGATACTCCCTCAAACCCCAAATTGTCAGTTCTTAAGCTTTCACTACCACAAATATTGAAAATGAGTATGGACACATGGAATACGAAATTGGTGCACCGAGGTAAAGCCTACACCGATTGGGCTGTTCAAATGGTTGTGGGACTAAACACTAGTTTCCCCGGGTCCCGTGCAAACAAGATGATGCCCCTGATCCTGTTATTAACGCTTGATATGGCTTCTATTGTGACTACTTCTCTCCAAACAAGGCTTATAAACCAAAGATGTGGACTAAAGCCTAGACCGGATGGTAAGTTATTGAGGCTTGTGACCTATAATACGAATCAGTTCGTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

186

Amino Acids

21.47

Weight (kDa)

10.02

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018973)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0110801
rosa_roxburghii Rroxscaffold_5G00335760 Rroxscaffold_7G00187890
rosa_rugosa Rorug03G0290400 Rorug04G0001100 Rorug06G0100500 Rorug06G0369100
rosa_samantha Rh2AG221800 Rh2CG224500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 476
AciI CCGC 1 cut(s) 51
AclWI GGATC 1 cut(s) 409
AcsI RAATTY 1 cut(s) 111
AfaI GTAC 1 cut(s) 557
AflII CTTAAG 1 cut(s) 257
AgsI TTSAA 2 cut(s) 283, 353
AhlI ACTAGT 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
AluBI AGCT 2 cut(s) 154, 262
AluI AGCT 2 cut(s) 154, 262
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 2
Alw44I GTGCAC 1 cut(s) 317
AlwI GGATC 1 cut(s) 409
Ama87I CYCGRG 1 cut(s) 383
ApaLI GTGCAC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 207, 387
AsuC2I CCSGG 2 cut(s) 384, 385
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 2 cut(s) 207, 387
BaeGI GKGCMC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 62, 503
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BcnI CCSGG 2 cut(s) 384, 385
BcoDI GTCTC 1 cut(s) 2
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 3 cut(s) 375, 501, 559
BfrI CTTAAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
Bme1390I CCNGG 2 cut(s) 384, 385
Bme18I GGWCC 2 cut(s) 207, 387
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 2 cut(s) 207, 387
BmiI GGNNCC 2 cut(s) 388, 389
BmrFI CCNGG 2 cut(s) 384, 385
BmrI ACTGGG 1 cut(s) 196
BmsI GCATC 2 cut(s) 94, 396
BmuI ACTGGG 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 102
BpuMI CCSGG 2 cut(s) 384, 385
BsaJI CCNNGG 4 cut(s) 219, 322, 382, 383
BsaWI WCCGGW 1 cut(s) 505
Bse1I ACTGG 1 cut(s) 202
BseDI CCNNGG 4 cut(s) 219, 322, 382, 383
BseGI GGATG 2 cut(s) 85, 514
BseNI ACTGG 1 cut(s) 202
BseSI GKGCMC 1 cut(s) 321
BseXI GCAGC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 2 cut(s) 384, 506
BslFI GGGAC 2 cut(s) 373, 378
BsmAI GTCTC 1 cut(s) 2
BsmFI GGGAC 2 cut(s) 373, 378
BsoBI CYCGRG 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 136, 414
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 388, 389
BspPI GGATC 1 cut(s) 409
BspTI CTTAAG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 4 cut(s) 219, 322, 382, 383
BssMI GATC 2 cut(s) 136, 414
BssT1I CCWWGG 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 257
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 2 cut(s) 85, 514
BstKTI GATC 2 cut(s) 139, 417
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 2 cut(s) 136, 414
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 382, 383
BstSLI GKGCMC 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 488
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 85, 514
BtsIMutI CAGTG 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 207, 387
Cfr9I CCCGGG 1 cut(s) 383
Csp6I GTAC 1 cut(s) 556
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 3 cut(s) 103, 220, 300
CviJI RGCY 8 cut(s) 154, 262, 332, 347, 440, 472, 499, 526
CviKI_1 RGCY 8 cut(s) 154, 262, 332, 347, 440, 472, 499, 526
CviQI GTAC 1 cut(s) 556
DpnI GATC 2 cut(s) 138, 416
DpnII GATC 2 cut(s) 136, 414
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 1 cut(s) 40
Eco130I CCWWGG 1 cut(s) 219
Eco47I GGWCC 2 cut(s) 207, 387
Eco88I CYCGRG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 3 cut(s) 106, 223, 303
FaiI YATR 9 cut(s) 72, 104, 198, 221, 293, 301, 437, 476, 537
FaqI GGGAC 2 cut(s) 373, 378
FatI CATG 3 cut(s) 102, 219, 299
Fnu4HI GCNGC 1 cut(s) 83
FokI GGATG 2 cut(s) 72, 521
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 3 cut(s) 375, 501, 559
GluI GCNGC 1 cut(s) 83
HapII CCGG 2 cut(s) 384, 506
Hin1II CATG 3 cut(s) 106, 223, 303
HindIII AAGCTT 2 cut(s) 152, 260
HinfI GANTC 2 cut(s) 10, 544
HpaII CCGG 2 cut(s) 384, 506
Hpy166II GTNNAC 5 cut(s) 143, 210, 319, 491, 556
Hpy8I GTNNAC 5 cut(s) 143, 210, 319, 491, 556
HpyCH4V TGCA 3 cut(s) 163, 319, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
Hsp92II CATG 3 cut(s) 106, 223, 303
KflI GGGWCCC 1 cut(s) 387
Kzo9I GATC 2 cut(s) 136, 414
LpnPI CCDG 6 cut(s) 105, 215, 397, 425, 431, 519
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 94, 396
MaeI CTAG 3 cut(s) 375, 501, 559
MaeIII GTNAC 2 cut(s) 448, 529
MalI GATC 2 cut(s) 138, 416
MboI GATC 2 cut(s) 136, 414
MboII GAAGA 2 cut(s) 107, 202
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 3 cut(s) 111, 245, 311
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 3 cut(s) 244, 317, 516
MroXI GAANNNNTTC 1 cut(s) 548
MseI TTAA 3 cut(s) 150, 258, 425
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 2 cut(s) 384, 506
MspR9I CCNGG 2 cut(s) 384, 385
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 2 cut(s) 384, 385
NcoI CCATGG 1 cut(s) 219
NdeII GATC 2 cut(s) 136, 414
NlaIII CATG 3 cut(s) 106, 223, 303
NlaIV GGNNCC 2 cut(s) 388, 389
NmuCI GTSAC 2 cut(s) 448, 529
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
PpuMI RGGWCCY 1 cut(s) 387
PsiI TTATAA 1 cut(s) 476
Psp5II RGGWCCY 1 cut(s) 387
PspN4I GGNNCC 2 cut(s) 388, 389
PspPI GGNCC 2 cut(s) 207, 387
PspPPI RGGWCCY 1 cut(s) 387
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SaqAI TTAA 3 cut(s) 150, 258, 425
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 2 cut(s) 136, 414
Sau96I GGNCC 2 cut(s) 207, 387
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 384, 385
SduI GDGCHC 1 cut(s) 321
SetI ASST 4 cut(s) 156, 264, 328, 536
SfaNI GCATC 2 cut(s) 94, 396
SinI GGWCC 2 cut(s) 207, 387
SmaI CCCGGG 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 3 cut(s) 111, 245, 311
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 279
SspMI CTAG 3 cut(s) 375, 501, 559
StyD4I CCNGG 2 cut(s) 382, 383
StyI CCWWGG 1 cut(s) 219
TaqI TCGA 2 cut(s) 57, 188
TasI AATT 3 cut(s) 111, 245, 311
TatI WGTACW 1 cut(s) 555
TfiI GAWTC 1 cut(s) 544
Tru1I TTAA 3 cut(s) 150, 258, 425
Tru9I TTAA 3 cut(s) 150, 258, 425
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 2 cut(s) 448, 529
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 2 cut(s) 448, 529
TspMI CCCGGG 1 cut(s) 383
TspRI CASTG 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 257
VneI GTGCAC 1 cut(s) 317
VpaK11BI GGWCC 2 cut(s) 207, 387
XapI RAATTY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmaI CCCGGG 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 3 cut(s) 375, 501, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.