Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0018973

Physical Location & Seq

Genomic Coordinates Reverse (-)

22631036 .. 22632581

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG224500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAATTCCTTCAGCGTTGTATATTTCCTCGCTGTACTTTCAGCATGCCAGATGTTGTCTATTGGGCCATATTTGTGCACACTCTTCATTCCCTGGAGACACCATTTTTTAACACAGTCAACCACATGGATGTTCTTATATGTAGAACCTTACAGTCTATGATATGTTGCTGCACTGAATCTGAAGTTGGTAGACTGGGGAAGTTTCTTTGTGAGACCTTGAAAATTGCTTACTATTTGAAGAGTGAAGGATCTATTTATGAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990428

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

THOC2_N Tho2 Thoc2

Protein Analysis

89

Amino Acids

10.46

Weight (kDa)

6.25

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho2	PF11262	2 - 89	2.8e-25	Transcription factor/nuclear export subunit protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110801
rosa_roxburghii	Rroxscaffold_5G00335760 Rroxscaffold_7G00187890
rosa_rugosa	Rorug03G0290400 Rorug04G0001100 Rorug06G0100500 Rorug06G0369100
rosa_samantha	Rh2AG221800 Rh2CG224500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	1 cut(s)	37
AfeI	AGCGCT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	223, 241
AjnI	CCWGG	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	2 cut(s)	92, 209
Alw44I	GTGCAC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	259
Aor51HI	AGCGCT	1 cut(s)	266
AoxI	GGCC	1 cut(s)	66
ApaLI	GTGCAC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	9
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	92, 209
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	92, 209
BsnI	GGCC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	118, 156
Bst6I	CTCTTC	2 cut(s)	90, 236
BstC8I	GCNNGC	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	254
BstMAI	GTCTC	2 cut(s)	92, 209
BstMBI	GATC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	66
Csp6I	GTAC	1 cut(s)	36
CviAII	CATG	2 cut(s)	46, 127
CviJI	RGCY	1 cut(s)	68
CviKI_1	RGCY	1 cut(s)	68
CviQI	GTAC	1 cut(s)	36
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	90, 236
EarI	CTCTTC	2 cut(s)	90, 236
Eco31I	GGTCTC	1 cut(s)	209
Eco47III	AGCGCT	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	93
FaeI	CATG	2 cut(s)	49, 130
FaiI	YATR	9 cut(s)	23, 47, 71, 128, 140, 142, 161, 166, 261
FatI	CATG	2 cut(s)	45, 126
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	172
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	172
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	1 cut(s)	172
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	49, 130
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	179
Hpy166II	GTNNAC	3 cut(s)	79, 121, 194
Hpy188I	TCNGA	1 cut(s)	184
Hpy8I	GTNNAC	3 cut(s)	79, 121, 194
HpyAV	CCTTC	2 cut(s)	20, 242
HpyCH4III	ACNGT	2 cut(s)	118, 156
HpyCH4V	TGCA	2 cut(s)	79, 174
Hsp92II	CATG	2 cut(s)	49, 130
HspAI	GCGC	1 cut(s)	265
Kzo9I	GATC	1 cut(s)	251
LpnPI	CCDG	4 cut(s)	63, 80, 107, 182
Lsp1109I	GCAGC	1 cut(s)	158
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MboII	GAAGA	2 cut(s)	77, 253
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	2 cut(s)	5, 225
MnlI	CCTC	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	2 cut(s)	74, 129
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	2 cut(s)	49, 130
NspI	RCATGY	1 cut(s)	49
PaeI	GCATGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
RseI	CAYNNNNRTG	2 cut(s)	74, 129
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	172
Sau3AI	GATC	1 cut(s)	251
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	2 cut(s)	152, 221
SgeI	CNNG	8 cut(s)	42, 58, 62, 106, 107, 139, 209, 232
SmiMI	CAYNNNNRTG	2 cut(s)	74, 129
SphI	GCATGC	1 cut(s)	49
Sse9I	AATT	2 cut(s)	5, 225
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	118, 156
TasI	AATT	2 cut(s)	5, 225
TatI	WGTACW	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	181
VneI	GTGCAC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.