Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0018973

Physical Location & Seq

Genomic Coordinates Reverse (-)

208205 .. 210869

Gene Structure 2665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0001100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGTCTCGTCTGTCTTTCTTGCTCCTCCTCCTCCTCCTCCTCAACCTCCACATCTGCTACGCTGCTGCTGCTGATGACTCACTCAAATTTGAGAACCCAAGGCTTGCCAAGGCTTACACCGCCCTCCAAGCCTGGAAGTCTGCCATCTTCTCGGACCCATTCAACTTCACCTCGAACTGGAACGGGTCGGACGTGTGCTCCTACATGGGAGTCTTCTGCACCGCCCTCCCCTCAATCGGGCGTGTTGTCGCCGGCATTGACCTCAACCACGCTGACATTGCCGGCTACCTGCCTCCAGAGTTAGGCCTCCTCTCCGACCTCGCTCTCTTCCACATCAACTCCAACCGCTTCTGCGGCGTCGTCCCCACAAGCTTTCGGCGACTAAAGCTGCTCCATGAGCTGGATCTCAGCAACAACCGCTTTGTGGGGAACTTCCCCAAAGTGGTGCTCTCCTTGCCTTCCCTCAAGTACTTGGATCTCCGTTTTAACGAGTTCGAAGGCTCCGTTCCTTCCCAGCTCTTCGACAAGGATCTCGATGCCATTTTCCTCAACGACAACAGGTTCCACTTCGGCATCCCTCAGAATCTCGGAAACTCGCCGGTTTCGGTGCTGGTGTTGGCCAACAATAATCTTGGGGGTTGCATTCCAGGTAGCATCGGTAACATGTGGAAGACGCTCAACGAGATCATTCTGTTGAATGACAATCTCACCGGCTGCTTGCCTCCCCAGATTGGCCGCCTACGCAATCTCACTGTCTTTGATGTGAGCTTCAACCAGCTTCAAGGCCCTCTGCCCTCCGCCTCCATAGCCAAAATGAAGAGCTTGGAGGAGCTGGACGTCGCCCATAACAGATTCACCGGTGTAATACCAGCCAGCATTTGCCAATTGCCAGCCTTGCACAACTTCACCTATTCCTTCAACTACTTCACCGGAGAGGCTCCTGCTTGCACTGCAACTCCTGTCTCTCATAATGGTAGCAAGAACTGCATTCCTGGCAAGTTGGATCAAAGATCTACAAGGGAATGTGCTTCCCCAGCTGCACGTCCCGTGGACTGCAGCAAGCTCAAATGCGGAGGTGGCGGTGGCGGTGGCCGCGGCGGGTCTGTCACAAAGCCGCGCCCTCCTCGGGCTTCAACACCTCCATCGCAAAGAATTCCTGTTCCTAAAGTTGCTCCTCCTCCACCCCCTCCGACTTCAAAGTCATCGCCTTCCACTAGATCACATCCTCCACCGCCAATATCAACACCAACATCACCCCCGCCTTCTTCACCTTCACCGACCAAGTCAAAGCCGCCTTCACCTCCTCCACCACCTACTGAAAAAGTATCACCCAGGACTCATCTTCATGTTCCTCCACCCCCACCGACCCAAAAGGTATCACCAAGTACCCATCTAGCTCCACCTCCCCCCAGTTCGACCCATTTCAACTATTCGTCCCCACCACTAGTACCAGTACCTGCACCAGCTGTACCACCGGTTTACCATGCCTCCCCGCCTGATCATCACTCTCATATAGTGCCTCCATCATTCCCGTCACCATCACCACCACCACCAAGTTATCATTCTTATGCTTCACCACCACCGCCGCCGCCTCCACAACAGTCTGTTGAGATTCCAACTCCTGCCCCACCATCACCACAACACTACTACTCACCTCATGTCCCACCAACAGAAGCTCCAAGCTACCAACATTCTTACAGTTCACCACCTCCACCCCCGTCACCGCCTCCGCCACAGTACTCTTCCCATGTCCCATCTCCAAACTATCATCATAGTCCGGGTTACACTTCACCTCCTCCACCTCCGCCCCCGGCCAATGAACATTATACAAAAGCACCACCACCTTGGCACACTCCCGAGCATTATTCCCCACCCAAAACAGCTGATAGTCCACCTCCGCCCCCGGCCAAGGAACATTATACAAAAGCTCCACCACCTTATTGGCACACTCCCGAGCATCATTCGCCACCCAAAACAGCTGCTAGTCCACCTCCGCCCCCGACCAATGAGCATTATACAAATGCACCACCACCTTGGCACACGCCCGAGCATTATTCACCACCCAAAACAGTTGCAAGTCCACCTCCCCCTCCCCCATCAGCTCCTATTTCACCGACCGAGCCATCACCTTCCCATCCTCTGCCGCCCATAGGCTGTATCATTCCAGCACCAATTCTGCCACCTCCACCAAGCCATCACCACTCACCTCCTCAACAATGGCATCATCCACCACCACCGTCATCGTCGCATCAACAACCTCCTCCACATGGTGAGCCCCCCAAGTTTGGTAACAACCCTCCGCTTCCACCAGTGATTGGAGTCTCATATGCATCTCCTCCTCCTCCTGCAATTCCTTACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990428

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

THOC2_N Tho2 Thoc2

Protein Analysis

787

Amino Acids

84.4

Weight (kDa)

8.71

Isoelectric Point (pI)

86.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	40 - 74	3.1e-06	Leucine rich repeat N-terminal domain
LRR_8	PF13855	107 - 164	1.6e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110801
rosa_roxburghii	Rroxscaffold_5G00335760 Rroxscaffold_7G00187890
rosa_rugosa	Rorug03G0290400 Rorug04G0001100 Rorug06G0100500 Rorug06G0369100
rosa_samantha	Rh2AG221800 Rh2CG224500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1198
AatII	GACGTC	1 cut(s)	840
Acc36I	ACCTGC	2 cut(s)	297, 1465
AccB7I	CCANNNNNTGG	2 cut(s)	400, 2315
AccII	CGCG	2 cut(s)	1095, 1117
AclWI	GGATC	4 cut(s)	411, 483, 537, 1011
AcoI	YGGCCR	5 cut(s)	618, 733, 1090, 1812, 1905
AcsI	RAATTY	2 cut(s)	86, 1152
AcyI	GRCGYC	2 cut(s)	357, 837
AdeI	CACNNNGTG	1 cut(s)	2270
AfaI	GTAC	6 cut(s)	470, 1387, 1449, 1455, 1470, 1739
AflIII	ACRYGT	2 cut(s)	192, 663
AgeI	ACCGGT	2 cut(s)	857, 1474
AgsI	TTSAA	8 cut(s)	163, 697, 772, 782, 919, 1134, 1197, 1426
AhlI	ACTAGT	1 cut(s)	1444
AjiI	CACGTC	2 cut(s)	193, 1043
AjnI	CCWGG	4 cut(s)	131, 646, 991, 1331
AjuI	GAANNNNNNNTTGG	2 cut(s)	1546, 1578
Alw21I	GWGCWC	2 cut(s)	200, 450
Alw26I	GTCTC	3 cut(s)	9, 967, 2326
AlwI	GGATC	4 cut(s)	411, 483, 537, 1011
AlwNI	CAGNNNCTG	1 cut(s)	1457
Ama87I	CYCGRG	4 cut(s)	1125, 1856, 1952, 2045
AoxI	GGCC	7 cut(s)	304, 618, 733, 784, 1090, 1812, 1905
ApeKI	GCWGC	8 cut(s)	62, 65, 68, 388, 714, 1037, 1056, 1979
ApoI	RAATTY	2 cut(s)	86, 1152
AsiGI	ACCGGT	2 cut(s)	857, 1474
AspLEI	GCGC	1 cut(s)	1119
AspS9I	GGNCC	2 cut(s)	154, 785
AsuC2I	CCSGG	3 cut(s)	1779, 1811, 1904
AsuII	TTCGAA	1 cut(s)	495
AvaI	CYCGRG	4 cut(s)	1125, 1856, 1952, 2045
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	620
BanII	GRGCYC	1 cut(s)	2277
BbsI	GAAGAC	2 cut(s)	205, 677
Bbv12I	GWGCWC	2 cut(s)	200, 450
BbvI	GCAGC	8 cut(s)	49, 52, 55, 375, 701, 1024, 1068, 1966
BciT130I	CCWGG	4 cut(s)	133, 648, 993, 1333
BclI	TGATCA	1 cut(s)	1498
BcnI	CCSGG	3 cut(s)	1779, 1811, 1904
BcoDI	GTCTC	3 cut(s)	9, 967, 2326
BcuI	ACTAGT	1 cut(s)	1444
BfaI	CTAG	4 cut(s)	1215, 1394, 1445, 1983
BfmI	CTRYAG	1 cut(s)	1054
BfuAI	ACCTGC	2 cut(s)	297, 1465
BglII	AGATCT	1 cut(s)	1010
BmcAI	AGTACT	2 cut(s)	470, 1739
Bme1390I	CCNGG	7 cut(s)	133, 648, 993, 1333, 1779, 1811, 1904
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	4 cut(s)	1125, 1856, 1952, 2045
BmgBI	CACGTC	2 cut(s)	193, 1043
BmgT120I	GGNCC	2 cut(s)	154, 785
BmiI	GGNNCC	4 cut(s)	156, 502, 563, 939
BmrFI	CCNGG	7 cut(s)	133, 648, 993, 1333, 1779, 1811, 1904
BmrI	ACTGGG	1 cut(s)	1404
BmsI	GCATC	7 cut(s)	526, 582, 663, 1966, 2230, 2257, 2339
BmuI	ACTGGG	1 cut(s)	1404
BpiI	GAAGAC	2 cut(s)	205, 677
BpmI	CTGGAG	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	449
BpuMI	CCSGG	3 cut(s)	1779, 1811, 1904
BsaHI	GRCGYC	2 cut(s)	357, 837
BsaWI	WCCGGW	3 cut(s)	857, 929, 1474
Bse118I	RCCGGY	6 cut(s)	251, 281, 598, 710, 857, 1474
Bse1I	ACTGG	4 cut(s)	182, 1410, 1451, 2309
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	4 cut(s)	133, 648, 993, 1333
BseGI	GGATG	4 cut(s)	573, 1222, 2134, 2224
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	421, 593
BseNI	ACTGG	4 cut(s)	182, 1410, 1451, 2309
BseXI	GCAGC	8 cut(s)	49, 52, 55, 375, 701, 1024, 1068, 1966
BseYI	CCCAGC	2 cut(s)	513, 1033
BsgI	GTGCAG	3 cut(s)	202, 1023, 1443
Bsh1236I	CGCG	2 cut(s)	1095, 1117
Bsh1285I	CGRYCG	1 cut(s)	2118
BshFI	GGCC	7 cut(s)	306, 620, 735, 786, 1092, 1814, 1907
BshTI	ACCGGT	2 cut(s)	857, 1474
BsiEI	CGRYCG	1 cut(s)	2118
BsiHKAI	GWGCWC	2 cut(s)	200, 450
BsiHKCI	CYCGRG	4 cut(s)	1125, 1856, 1952, 2045
BslFI	GGGAC	5 cut(s)	347, 1029, 1420, 1646, 1736
BsmAI	GTCTC	3 cut(s)	9, 967, 2326
BsmFI	GGGAC	5 cut(s)	347, 1029, 1420, 1646, 1736
BsmI	GAATGC	2 cut(s)	642, 987
BsnI	GGCC	7 cut(s)	306, 620, 735, 786, 1092, 1814, 1907
BsoBI	CYCGRG	4 cut(s)	1125, 1856, 1952, 2045
Bsp119I	TTCGAA	1 cut(s)	495
Bsp1286I	GDGCHC	3 cut(s)	200, 450, 2277
Bsp143I	GATC	8 cut(s)	403, 475, 529, 684, 1003, 1010, 1217, 1498
BspANI	GGCC	7 cut(s)	306, 620, 735, 786, 1092, 1814, 1907
BspCNI	CTCAG	2 cut(s)	420, 592
BspFNI	CGCG	2 cut(s)	1095, 1117
BspLI	GGNNCC	4 cut(s)	156, 502, 563, 939
BspMAI	CTGCAG	1 cut(s)	1058
BspMI	ACCTGC	2 cut(s)	297, 1465
BspPI	GGATC	4 cut(s)	411, 483, 537, 1011
BspQI	GCTCTTC	2 cut(s)	524, 812
BspT104I	TTCGAA	1 cut(s)	495
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	6 cut(s)	251, 281, 598, 710, 857, 1474
BsrI	ACTGG	4 cut(s)	182, 1410, 1451, 2309
BssAI	RCCGGY	6 cut(s)	251, 281, 598, 710, 857, 1474
BssMI	GATC	8 cut(s)	403, 475, 529, 684, 1003, 1010, 1217, 1498
BssNI	GRCGYC	2 cut(s)	357, 837
BssT1I	CCWWGG	5 cut(s)	98, 108, 1844, 1908, 2033
Bst2UI	CCWGG	4 cut(s)	133, 648, 993, 1333
Bst4CI	ACNGT	6 cut(s)	754, 1602, 1700, 1737, 2071, 2238
Bst6I	CTCTTC	4 cut(s)	332, 524, 812, 1747
BstACI	GRCGYC	2 cut(s)	357, 837
BstAPI	GCANNNNNTGC	1 cut(s)	984
BstBI	TTCGAA	1 cut(s)	495
BstC8I	GCNNGC	8 cut(s)	105, 253, 283, 719, 874, 891, 946, 1061
BstDEI	CTNAG	2 cut(s)	407, 579
BstDSI	CCRYGG	2 cut(s)	1047, 1093
BstF5I	GGATG	4 cut(s)	573, 1222, 2134, 2224
BstFNI	CGCG	2 cut(s)	1095, 1117
BstHHI	GCGC	1 cut(s)	1119
BstKTI	GATC	8 cut(s)	406, 478, 532, 687, 1006, 1013, 1220, 1501
BstMAI	GTCTC	3 cut(s)	9, 967, 2326
BstMBI	GATC	8 cut(s)	403, 475, 529, 684, 1003, 1010, 1217, 1498
BstMCI	CGRYCG	1 cut(s)	2118
BstNI	CCWGG	4 cut(s)	133, 648, 993, 1333
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	7 cut(s)	131, 646, 991, 1331, 1777, 1809, 1902
BstSFI	CTRYAG	1 cut(s)	1054
BstUI	CGCG	2 cut(s)	1095, 1117
BstV1I	GCAGC	8 cut(s)	49, 52, 55, 375, 701, 1024, 1068, 1966
BstV2I	GAAGAC	2 cut(s)	205, 677
BstX2I	RGATCY	4 cut(s)	403, 475, 529, 1010
BstXI	CCANNNNNNTGG	3 cut(s)	1845, 1941, 2034
BstYI	RGATCY	4 cut(s)	403, 475, 529, 1010
BsuRI	GGCC	7 cut(s)	306, 620, 735, 786, 1092, 1814, 1907
BtgI	CCRYGG	2 cut(s)	1047, 1093
BtgZI	GCGATG	2 cut(s)	1128, 1188
BtrI	CACGTC	2 cut(s)	193, 1043
BtsCI	GGATG	4 cut(s)	573, 1222, 2134, 2224
BtsI	GCAGTG	1 cut(s)	948
BtsIMutI	CAGTG	3 cut(s)	750, 948, 2316
BveI	ACCTGC	2 cut(s)	297, 1465
Cac8I	GCNNGC	8 cut(s)	105, 253, 283, 719, 874, 891, 946, 1061
CaiI	CAGNNNCTG	1 cut(s)	1457
CfoI	GCGC	1 cut(s)	1119
Cfr10I	RCCGGY	6 cut(s)	251, 281, 598, 710, 857, 1474
Cfr13I	GGNCC	2 cut(s)	154, 785
Cfr42I	CCGCGG	1 cut(s)	1096
CseI	GACGC	2 cut(s)	346, 682
Csp6I	GTAC	6 cut(s)	469, 1386, 1448, 1454, 1469, 1738
CspAI	ACCGGT	2 cut(s)	857, 1474
CviAII	CATG	8 cut(s)	205, 395, 664, 1346, 1484, 1658, 1748, 2267
CviQI	GTAC	6 cut(s)	469, 1386, 1448, 1454, 1469, 1738
DdeI	CTNAG	2 cut(s)	407, 579
DpnI	GATC	8 cut(s)	405, 477, 531, 686, 1005, 1012, 1219, 1500
DpnII	GATC	8 cut(s)	403, 475, 529, 684, 1003, 1010, 1217, 1498
DraIII	CACNNNGTG	1 cut(s)	2270
DrdI	GACNNNNNNGTC	1 cut(s)	1198
DseDI	GACNNNNNNGTC	1 cut(s)	1198
EaeI	YGGCCR	5 cut(s)	618, 733, 1090, 1812, 1905
Eam1104I	CTCTTC	4 cut(s)	332, 524, 812, 1747
EarI	CTCTTC	4 cut(s)	332, 524, 812, 1747
EciI	GGCGGA	5 cut(s)	787, 1719, 1794, 1887, 1983
Eco130I	CCWWGG	5 cut(s)	98, 108, 1844, 1908, 2033
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	2277
Eco47I	GGWCC	1 cut(s)	154
Eco88I	CYCGRG	4 cut(s)	1125, 1856, 1952, 2045
EcoO109I	RGGNCCY	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	1152
EcoRII	CCWGG	4 cut(s)	131, 646, 991, 1331
EcoT14I	CCWWGG	5 cut(s)	98, 108, 1844, 1908, 2033
EcoT22I	ATGCAT	1 cut(s)	2332
EcoT38I	GRGCYC	1 cut(s)	2277
ErhI	CCWWGG	5 cut(s)	98, 108, 1844, 1908, 2033
FaeI	CATG	8 cut(s)	208, 398, 667, 1349, 1487, 1661, 1751, 2270
FaqI	GGGAC	5 cut(s)	347, 1029, 1420, 1646, 1736
FatI	CATG	8 cut(s)	204, 394, 663, 1345, 1483, 1657, 1747, 2266
FauI	CCCGC	3 cut(s)	1091, 1266, 1500
FauNDI	CATATG	1 cut(s)	2326
FbaI	TGATCA	1 cut(s)	1498
FokI	GGATG	4 cut(s)	560, 1209, 2121, 2211
FriOI	GRGCYC	1 cut(s)	2277
FspBI	CTAG	4 cut(s)	1215, 1394, 1445, 1983
GlaI	GCGC	1 cut(s)	1118
GsaI	CCCAGC	2 cut(s)	517, 1037
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	7 cut(s)	306, 620, 735, 786, 1092, 1814, 1907
HgaI	GACGC	2 cut(s)	346, 682
HhaI	GCGC	1 cut(s)	1119
Hin1I	GRCGYC	2 cut(s)	357, 837
Hin1II	CATG	8 cut(s)	208, 398, 667, 1349, 1487, 1661, 1751, 2270
Hin6I	GCGC	1 cut(s)	1117
HinP1I	GCGC	1 cut(s)	1117
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	7 cut(s)	77, 210, 583, 852, 1336, 1612, 2319
Hpy166II	GTNNAC	6 cut(s)	1051, 1480, 1703, 1892, 1988, 2081
Hpy188I	TCNGA	6 cut(s)	154, 190, 316, 582, 590, 1191
Hpy188III	TCNNGA	4 cut(s)	296, 533, 1856, 1952
Hpy8I	GTNNAC	6 cut(s)	1051, 1480, 1703, 1892, 1988, 2081
Hpy99I	CGWCG	3 cut(s)	362, 842, 2248
HpyAV	CCTTC	9 cut(s)	468, 491, 519, 925, 1218, 1272, 1281, 1305, 2139
HpyCH4III	ACNGT	6 cut(s)	754, 1602, 1700, 1737, 2071, 2238
HpyCH4IV	ACGT	3 cut(s)	192, 837, 1042
HpyF3I	CTNAG	2 cut(s)	407, 579
HpySE526I	ACGT	3 cut(s)	192, 837, 1042
Hsp92I	GRCGYC	2 cut(s)	357, 837
Hsp92II	CATG	8 cut(s)	208, 398, 667, 1349, 1487, 1661, 1751, 2270
HspAI	GCGC	1 cut(s)	1117
KroI	GCCGGC	2 cut(s)	251, 281
KroNI	GCCGGC	2 cut(s)	253, 283
Ksp22I	TGATCA	1 cut(s)	1498
KspI	CCGCGG	1 cut(s)	1096
Kzo9I	GATC	8 cut(s)	403, 475, 529, 684, 1003, 1010, 1217, 1498
LguI	GCTCTTC	2 cut(s)	524, 812
Lsp1109I	GCAGC	8 cut(s)	49, 52, 55, 375, 701, 1024, 1068, 1966
LweI	GCATC	7 cut(s)	526, 582, 663, 1966, 2230, 2257, 2339
MaeI	CTAG	4 cut(s)	1215, 1394, 1445, 1983
MaeII	ACGT	3 cut(s)	192, 837, 1042
MaeIII	GTNAC	6 cut(s)	659, 1105, 1533, 1719, 1781, 2288
MalI	GATC	8 cut(s)	405, 477, 531, 686, 1005, 1012, 1219, 1500
MboI	GATC	8 cut(s)	403, 475, 529, 684, 1003, 1010, 1217, 1498
MboII	GAAGA	9 cut(s)	139, 205, 319, 511, 682, 829, 1257, 1334, 1734
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	4 cut(s)	403, 475, 529, 1010
MhlI	GDGCHC	3 cut(s)	200, 450, 2277
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	5 cut(s)	86, 884, 1152, 2172, 2349
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	4 cut(s)	71, 219, 1330, 2328
MmeI	TCCRAC	6 cut(s)	168, 339, 366, 981, 1214, 1640
Mox20I	TGGCCA	1 cut(s)	620
Mph1103I	ATGCAT	1 cut(s)	2332
MroNI	GCCGGC	2 cut(s)	251, 281
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	2 cut(s)	1344, 1566
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	5 cut(s)	1037, 1095, 1466, 1883, 1979
MspR9I	CCNGG	7 cut(s)	133, 648, 993, 1333, 1779, 1811, 1904
MunI	CAATTG	1 cut(s)	884
Mva1269I	GAATGC	2 cut(s)	642, 987
MvaI	CCWGG	4 cut(s)	133, 648, 993, 1333
MvnI	CGCG	2 cut(s)	1095, 1117
NaeI	GCCGGC	2 cut(s)	253, 283
NciI	CCSGG	3 cut(s)	1779, 1811, 1904
NdeI	CATATG	1 cut(s)	2326
NdeII	GATC	8 cut(s)	403, 475, 529, 684, 1003, 1010, 1217, 1498
NgoMIV	GCCGGC	2 cut(s)	251, 281
NlaIII	CATG	8 cut(s)	208, 398, 667, 1349, 1487, 1661, 1751, 2270
NlaIV	GGNNCC	4 cut(s)	156, 502, 563, 939
NmuCI	GTSAC	3 cut(s)	1105, 1533, 1719
NsiI	ATGCAT	1 cut(s)	2332
NspI	RCATGY	1 cut(s)	667
NspV	TTCGAA	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	306
PciI	ACATGT	1 cut(s)	663
PciSI	GCTCTTC	2 cut(s)	524, 812
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 501
PctI	GAATGC	2 cut(s)	642, 987
PdiI	GCCGGC	2 cut(s)	253, 283
PfeI	GAWTC	3 cut(s)	583, 852, 1612
PflFI	GACNNNGTC	1 cut(s)	1282
PflMI	CCANNNNNTGG	2 cut(s)	400, 2315
PinAI	ACCGGT	2 cut(s)	857, 1474
PleI	GAGTC	4 cut(s)	71, 218, 1330, 2327
PpsI	GAGTC	4 cut(s)	71, 218, 1330, 2327
PscI	ACATGT	1 cut(s)	663
Psp6I	CCWGG	4 cut(s)	131, 646, 991, 1331
PspFI	CCCAGC	2 cut(s)	513, 1033
PspGI	CCWGG	4 cut(s)	131, 646, 991, 1331
PspN4I	GGNNCC	4 cut(s)	156, 502, 563, 939
PspPI	GGNCC	2 cut(s)	154, 785
PstI	CTGCAG	1 cut(s)	1058
PstNI	CAGNNNCTG	1 cut(s)	1457
PsuI	RGATCY	4 cut(s)	403, 475, 529, 1010
PsyI	GACNNNGTC	1 cut(s)	1282
PvuII	CAGCTG	4 cut(s)	1037, 1466, 1883, 1979
RsaI	GTAC	6 cut(s)	470, 1387, 1449, 1455, 1470, 1739
RsaNI	GTAC	6 cut(s)	469, 1386, 1448, 1454, 1469, 1738
RseI	CAYNNNNRTG	2 cut(s)	1344, 1566
SacII	CCGCGG	1 cut(s)	1096
SapI	GCTCTTC	2 cut(s)	524, 812
SaqAI	TTAA	1 cut(s)	486
Sau3AI	GATC	8 cut(s)	403, 475, 529, 684, 1003, 1010, 1217, 1498
Sau96I	GGNCC	2 cut(s)	154, 785
ScaI	AGTACT	2 cut(s)	470, 1739
SchI	GAGTC	4 cut(s)	71, 219, 1330, 2328
ScrFI	CCNGG	7 cut(s)	133, 648, 993, 1333, 1779, 1811, 1904
SduI	GDGCHC	3 cut(s)	200, 450, 2277
SfaNI	GCATC	7 cut(s)	526, 582, 663, 1966, 2230, 2257, 2339
SfcI	CTRYAG	1 cut(s)	1054
Sfr303I	CCGCGG	1 cut(s)	1096
SfuI	TTCGAA	1 cut(s)	495
SgrAI	CRCCGGYG	1 cut(s)	857
SgrBI	CCGCGG	1 cut(s)	1096
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	1344, 1566
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SpeI	ACTAGT	1 cut(s)	1444
Sse9I	AATT	5 cut(s)	86, 884, 1152, 2172, 2349
SseBI	AGGCCT	1 cut(s)	306
SspMI	CTAG	4 cut(s)	1215, 1394, 1445, 1983
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	7 cut(s)	131, 646, 991, 1331, 1777, 1809, 1902
StyI	CCWWGG	5 cut(s)	98, 108, 1844, 1908, 2033
TaaI	ACNGT	6 cut(s)	754, 1602, 1700, 1737, 2071, 2238
TaiI	ACGT	3 cut(s)	195, 840, 1045
TaqI	TCGA	5 cut(s)	173, 495, 522, 534, 1415
TaqII	GACCGA	1 cut(s)	2132
TasI	AATT	5 cut(s)	86, 884, 1152, 2172, 2349
TatI	WGTACW	2 cut(s)	468, 1737
TauI	GCSGC	9 cut(s)	357, 738, 1095, 1098, 1117, 1294, 1588, 1591, 2146
TfiI	GAWTC	3 cut(s)	583, 852, 1612
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	3 cut(s)	757, 955, 2316
TseFI	GTSAC	3 cut(s)	1105, 1533, 1719
TseI	GCWGC	8 cut(s)	62, 65, 68, 388, 714, 1037, 1056, 1979
Tsp45I	GTSAC	3 cut(s)	1105, 1533, 1719
TspDTI	ATGAA	3 cut(s)	830, 1334, 1833
TspGWI	ACGGA	2 cut(s)	470, 493
TspRI	CASTG	3 cut(s)	757, 955, 2316
Tth111I	GACNNNGTC	1 cut(s)	1282
Van91I	CCANNNNNTGG	2 cut(s)	400, 2315
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	2 cut(s)	86, 1152
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1938
XspI	CTAG	4 cut(s)	1215, 1394, 1445, 1983
ZraI	GACGTC	1 cut(s)	838
ZrmI	AGTACT	2 cut(s)	470, 1739
Zsp2I	ATGCAT	1 cut(s)	2332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.