Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0018973

Physical Location & Seq

Genomic Coordinates Reverse (-)

51621884 .. 51624396

Gene Structure 2513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0369100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCGGATTCCAAAGTAGAGACCATCTCACGATTAGCCCAATGGAGGATTGACAATTTCGGACCATGTTGTTACATAAAGTCCGAGCCTTTCAAGCTCGGAATCTGGAATTGGCACTTTTCTATAGAGAAGAATCGGTATCTGTATATTCGTTTGTTTCCAGAACAATCGCGTTTGTCTAAGGAACAGCCTCCTCTTGCTCGCTTTGTGCTTAGAATTTCGAGCTCCGGCAATGGCCGTCAACCTTATATCTCCCCTGTTCATGAAAGACAGCTTCGCACAATGGATGACTTTGCCTGGCCTGTTAATTCCAGCTTCAATGGTCCCTTCGTCATTGATGTAGAGTTTCTTGACTTGAAGATATCCCCTATAAATGGTGGGGAGGCTACTCCTGTATGGCCTACTGGTGGATTGATGCAGTCTTTGTCAACCCAAAGCACTCTGAGATGCCTCTCTCGAATGCTTGATGAGGGCATCCATGCTGATGTCACCATCAGCACTGCTGAAGGATCTTTAAAAGCTCACAAAGCAATTCTTTCGGCAAATTCTCCTGTGTTCCAAAGCATGTTCAATCATGACCTTAAAGAAACAGTGTCCTCAACAATTGACATAGAAGACATGTCACTGGAGTCTTGCACGGCCCTTGTCAGTTATCTGTATGGAACCATTAAACAACAGGATTTCTGGAAGCACCGGTTGGCACTTCTAGGCGCGGCAAACAAATATGACATGTCAGACCTAAAAGATGCTTGTGAGGAGAGCCTTATGGAAGATATTAACTCCGGGAATGTCCTGGAGAGGCTGCAAGAGGCCCAGTTATACCAACTGCCCAAGCTGAAGAAAGGGTGTTTGCTGTACTTGTTTGGTTTTGGCAAGATATATGATGTTAGACATGAGATGGATACCTTTTTCAAGTATGCAGACAGAGAGTTGATGACCGAAATGTTTCAAGAAGTCCTTACAAGTTGGAAGCCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990428

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

THOC2_N Tho2 Thoc2

Protein Analysis

326

Amino Acids

37.3

Weight (kDa)

5.72

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	153 - 256	3.4e-21	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110801
rosa_roxburghii	Rroxscaffold_5G00335760 Rroxscaffold_7G00187890
rosa_rugosa	Rorug03G0290400 Rorug04G0001100 Rorug06G0100500 Rorug06G0369100
rosa_samantha	Rh2AG221800 Rh2CG224500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	172, 713
AciI	CCGC	2 cut(s)	5, 713
AclWI	GGATC	1 cut(s)	517
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	216, 544
AcuI	CTGAAG	2 cut(s)	525, 857
AfaI	GTAC	1 cut(s)	857
AfiI	CCNNNNNNNGG	3 cut(s)	45, 374, 407
AflIII	ACRYGT	2 cut(s)	618, 729
AgeI	ACCGGT	1 cut(s)	693
AgsI	TTSAA	6 cut(s)	94, 319, 358, 571, 913, 950
AjnI	CCWGG	2 cut(s)	296, 792
AjuI	GAANNNNNNNTTGG	4 cut(s)	94, 126, 680, 712
AluBI	AGCT	6 cut(s)	97, 225, 274, 315, 521, 835
AluI	AGCT	6 cut(s)	97, 225, 274, 315, 521, 835
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	517
AoxI	GGCC	5 cut(s)	235, 299, 398, 639, 810
ApeKI	GCWGC	1 cut(s)	802
ApoI	RAATTY	2 cut(s)	216, 544
AsiGI	ACCGGT	1 cut(s)	693
Asp700I	GAANNNNTTC	1 cut(s)	945
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	4 cut(s)	62, 323, 640, 811
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	1 cut(s)	481
AvaII	GGWCC	2 cut(s)	62, 323
BanII	GRGCYC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	789
BccI	CCATC	3 cut(s)	32, 500, 892
BceAI	ACGGC	2 cut(s)	222, 654
BcgI	CGANNNNNNTGC	2 cut(s)	519, 553
BciT130I	CCWGG	2 cut(s)	298, 794
BciVI	GTATCC	1 cut(s)	895
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	707
BfmI	CTRYAG	1 cut(s)	123
BfuI	GTATCC	1 cut(s)	895
BisI	GCNGC	2 cut(s)	714, 803
BlsI	GCNGC	2 cut(s)	715, 804
Bme1390I	CCNGG	3 cut(s)	298, 784, 794
Bme18I	GGWCC	2 cut(s)	62, 323
BmgT120I	GGNCC	4 cut(s)	62, 323, 640, 811
BmiI	GGNNCC	2 cut(s)	325, 664
BmrFI	CCNGG	3 cut(s)	298, 784, 794
BmrI	ACTGGG	1 cut(s)	808
BmsI	GCATC	4 cut(s)	405, 437, 483, 736
BmuI	ACTGGG	1 cut(s)	808
BpiI	GAAGAC	1 cut(s)	621
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	2 cut(s)	647, 815
BpuMI	CCSGG	1 cut(s)	784
BsaI	GGTCTC	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 374, 407
Bse118I	RCCGGY	1 cut(s)	693
Bse1I	ACTGG	3 cut(s)	409, 630, 814
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	2 cut(s)	298, 794
BseGI	GGATG	2 cut(s)	292, 474
BseLI	CCNNNNNNNGG	3 cut(s)	45, 374, 407
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	3 cut(s)	409, 630, 814
BseRI	GAGGAG	2 cut(s)	183, 770
BseXI	GCAGC	1 cut(s)	789
Bsh1236I	CGCG	2 cut(s)	172, 713
BshFI	GGCC	5 cut(s)	237, 301, 400, 641, 812
BshTI	ACCGGT	1 cut(s)	693
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	3 cut(s)	228, 694, 783
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	3 cut(s)	45, 374, 407
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	5 cut(s)	237, 301, 400, 641, 812
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	509
BspACI	CCGC	2 cut(s)	5, 713
BspANI	GGCC	5 cut(s)	237, 301, 400, 641, 812
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	2 cut(s)	172, 713
BspHI	TCATGA	2 cut(s)	262, 574
BspLI	GGNNCC	2 cut(s)	325, 664
BspPI	GGATC	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	693
BsrI	ACTGG	3 cut(s)	409, 630, 814
BssAI	RCCGGY	1 cut(s)	693
BssMI	GATC	1 cut(s)	509
Bst2UI	CCWGG	2 cut(s)	298, 794
Bst4CI	ACNGT	1 cut(s)	592
BstC8I	GCNNGC	2 cut(s)	202, 975
BstDEI	CTNAG	3 cut(s)	180, 212, 443
BstF5I	GGATG	2 cut(s)	292, 474
BstFNI	CGCG	2 cut(s)	172, 713
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	1 cut(s)	512
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	509
BstMWI	GCNNNNNNNGC	2 cut(s)	94, 527
BstNI	CCWGG	2 cut(s)	298, 794
BstNSI	RCATGY	3 cut(s)	568, 622, 733
BstSCI	CCNGG	3 cut(s)	296, 782, 792
BstSFI	CTRYAG	1 cut(s)	123
BstUI	CGCG	2 cut(s)	172, 713
BstV1I	GCAGC	1 cut(s)	789
BstV2I	GAAGAC	1 cut(s)	621
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	895
BsuRI	GGCC	5 cut(s)	237, 301, 400, 641, 812
BtsCI	GGATG	2 cut(s)	292, 474
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	498, 597, 623
Cac8I	GCNNGC	2 cut(s)	202, 975
CciI	TCATGA	2 cut(s)	262, 574
CfoI	GCGC	1 cut(s)	713
Cfr10I	RCCGGY	1 cut(s)	693
Cfr13I	GGNCC	4 cut(s)	62, 323, 640, 811
Csp6I	GTAC	1 cut(s)	856
CspAI	ACCGGT	1 cut(s)	693
CviAII	CATG	8 cut(s)	66, 263, 479, 565, 575, 619, 730, 893
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	3 cut(s)	180, 212, 443
DpnI	GATC	1 cut(s)	511
DpnII	GATC	1 cut(s)	509
DraI	TTTAAA	1 cut(s)	516
EaeI	YGGCCR	1 cut(s)	235
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	62, 323
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	2 cut(s)	525, 857
EcoICRI	GAGCTC	1 cut(s)	225
EcoRII	CCWGG	2 cut(s)	296, 792
EcoRV	GATATC	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	8 cut(s)	69, 266, 482, 568, 578, 622, 733, 896
FalI	AAGNNNNNCTT	4 cut(s)	519, 551, 942, 974
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	8 cut(s)	65, 262, 478, 564, 574, 618, 729, 892
Fnu4HI	GCNGC	2 cut(s)	714, 803
FokI	GGATG	2 cut(s)	299, 461
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	714, 803
FspBI	CTAG	1 cut(s)	707
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	2 cut(s)	714, 803
GsuI	CTGGAG	2 cut(s)	647, 815
HaeIII	GGCC	5 cut(s)	237, 301, 400, 641, 812
HapII	CCGG	3 cut(s)	228, 694, 783
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	8 cut(s)	69, 266, 482, 568, 578, 622, 733, 896
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HincII	GTYRAC	2 cut(s)	242, 429
HindII	GTYRAC	2 cut(s)	242, 429
HinfI	GANTC	4 cut(s)	8, 102, 133, 629
HpaII	CCGG	3 cut(s)	228, 694, 783
HphI	GGTGA	1 cut(s)	481
Hpy166II	GTNNAC	2 cut(s)	242, 429
Hpy188I	TCNGA	5 cut(s)	62, 85, 101, 444, 736
Hpy188III	TCNNGA	9 cut(s)	30, 106, 161, 263, 350, 456, 575, 685, 950
Hpy8I	GTNNAC	2 cut(s)	242, 429
HpyAV	CCTTC	2 cut(s)	337, 500
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4V	TGCA	5 cut(s)	418, 636, 805, 920, 977
HpyF10VI	GCNNNNNNNGC	2 cut(s)	94, 527
HpyF3I	CTNAG	3 cut(s)	180, 212, 443
Hsp92II	CATG	8 cut(s)	69, 266, 482, 568, 578, 622, 733, 896
HspAI	GCGC	1 cut(s)	711
Kzo9I	GATC	1 cut(s)	509
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	789
LweI	GCATC	4 cut(s)	405, 437, 483, 736
MaeI	CTAG	1 cut(s)	707
MaeIII	GTNAC	3 cut(s)	71, 487, 621
MalI	GATC	1 cut(s)	511
MboI	GATC	1 cut(s)	509
MboII	GAAGA	5 cut(s)	142, 370, 626, 782, 850
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	509
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	7 cut(s)	55, 109, 216, 307, 531, 544, 603
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	1 cut(s)	947
MroXI	GAANNNNTTC	1 cut(s)	945
MseI	TTAA	5 cut(s)	306, 515, 582, 669, 777
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	3 cut(s)	228, 694, 783
MspR9I	CCNGG	3 cut(s)	298, 784, 794
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	298, 794
MvnI	CGCG	2 cut(s)	172, 713
MwoI	GCNNNNNNNGC	2 cut(s)	94, 527
NciI	CCSGG	1 cut(s)	784
NdeII	GATC	1 cut(s)	509
NlaIII	CATG	8 cut(s)	69, 266, 482, 568, 578, 622, 733, 896
NlaIV	GGNNCC	2 cut(s)	325, 664
NmuCI	GTSAC	2 cut(s)	487, 621
NspI	RCATGY	3 cut(s)	568, 622, 733
PagI	TCATGA	2 cut(s)	262, 574
PciI	ACATGT	2 cut(s)	618, 729
PctI	GAATGC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	945
PfeI	GAWTC	3 cut(s)	8, 102, 133
PfoI	TCCNGGA	2 cut(s)	782, 792
PinAI	ACCGGT	1 cut(s)	693
PkrI	GCNGC	2 cut(s)	715, 804
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PscI	ACATGT	2 cut(s)	618, 729
Psp124BI	GAGCTC	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	296, 792
PspGI	CCWGG	2 cut(s)	296, 792
PspN4I	GGNNCC	2 cut(s)	325, 664
PspPI	GGNCC	4 cut(s)	62, 323, 640, 811
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	5 cut(s)	306, 515, 582, 669, 777
SatI	GCNGC	2 cut(s)	714, 803
Sau3AI	GATC	1 cut(s)	509
Sau96I	GGNCC	4 cut(s)	62, 323, 640, 811
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	3 cut(s)	298, 784, 794
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	4 cut(s)	405, 437, 483, 736
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	62, 323
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	7 cut(s)	55, 109, 216, 307, 531, 544, 603
SsiI	CCGC	2 cut(s)	5, 713
SspMI	CTAG	1 cut(s)	707
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	3 cut(s)	296, 782, 792
TaaI	ACNGT	1 cut(s)	592
TaqI	TCGA	2 cut(s)	221, 457
TaqII	GACCGA	1 cut(s)	953
TasI	AATT	7 cut(s)	55, 109, 216, 307, 531, 544, 603
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	3 cut(s)	8, 102, 133
Tru1I	TTAA	5 cut(s)	306, 515, 582, 669, 777
Tru9I	TTAA	5 cut(s)	306, 515, 582, 669, 777
TscAI	CASTG	3 cut(s)	505, 597, 630
TseFI	GTSAC	2 cut(s)	487, 621
TseI	GCWGC	1 cut(s)	802
Tsp45I	GTSAC	2 cut(s)	487, 621
TspDTI	ATGAA	2 cut(s)	251, 279
TspRI	CASTG	3 cut(s)	505, 597, 630
VpaK11BI	GGWCC	2 cut(s)	62, 323
XapI	RAATTY	2 cut(s)	216, 544
XceI	RCATGY	3 cut(s)	568, 622, 733
XmnI	GAANNNNTTC	1 cut(s)	945
XspI	CTAG	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.