Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0018973

Physical Location & Seq

Genomic Coordinates Reverse (-)

23326769 .. 23329104

Gene Structure 2336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG221800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAATACGAAATTGGTGCACCAGGTAAAGCGTACACTGACTGGGCAGCTCAAATGGTTGTGGGACTAAACACTAGTTTCCCCTGGGTCCTGTGCAAACAAGATGATGCCCCTGATCCTGTTAGAGAGAGGCATTCAATGCTAGAAGGTGATAGAACAAATGGAAAGCTTCCTTTGAAACCTATTATATACTTCCAAGAGTACCAAGGCAAATGGTTGAGTTCTTGTCTTGATACTTTAAAGATCAACATGGAATTCCTTCAGCGTTGTATATTTCCTCGCTGTACTTTCAGCATGCCAGATGTTGTCTATTGGGCCATATTTGCGCATACTCTTCATTCCCTGGAGACACCATTTTTTAACACAGTCAACCACATGGATGTTCTTATATGTAGAACCTTACAGTCTATGATATGTTGCTGCACTGAATCTAAAGTTGGTAGACTGGGGAAGTTTCTTTGTGAGACCTTGAAAATTGCTTACTATTGGAAGAGTGAAGGATCTATTTATGAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000346 GO:0000347 GO:0000445 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016441 GO:0016458 GO:0016604 GO:0016607 GO:0019222 GO:0031047 GO:0031050 GO:0031503 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045184 GO:0046483 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990428

KEGG Pathways

Metabolic & Signaling

ko03013 ko03040 map03013 map03040

Pfam Domains

Protein Families

THOC2_N Tho2 Thoc2

Protein Analysis

172

Amino Acids

19.96

Weight (kDa)

6.41

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tho2	PF11262	65 - 172	2.6e-26	Transcription factor/nuclear export subunit protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018973)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110801
rosa_roxburghii	Rroxscaffold_5G00335760 Rroxscaffold_7G00187890
rosa_rugosa	Rorug03G0290400 Rorug04G0001100 Rorug06G0100500 Rorug06G0369100
rosa_samantha	Rh2AG221800 Rh2CG224500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	442
AclWI	GGATC	2 cut(s)	110, 508
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	245
AfaI	GTAC	3 cut(s)	35, 203, 286
AfeI	AGCGCT	1 cut(s)	515
AgsI	TTSAA	3 cut(s)	138, 178, 472
AhlI	ACTAGT	1 cut(s)	74
AjnI	CCWGG	3 cut(s)	22, 83, 342
AjuI	GAANNNNNNNTTGG	3 cut(s)	29, 420, 452
AluBI	AGCT	2 cut(s)	50, 169
AluI	AGCT	2 cut(s)	50, 169
Alw21I	GWGCWC	1 cut(s)	22
Alw26I	GTCTC	2 cut(s)	341, 458
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	110, 508
Aor51HI	AGCGCT	1 cut(s)	515
AoxI	GGCC	1 cut(s)	315
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	2 cut(s)	47, 420
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	2 cut(s)	328, 516
AspS9I	GGNCC	2 cut(s)	88, 315
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	59, 407
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	3 cut(s)	24, 85, 344
BcoDI	GTCTC	2 cut(s)	341, 458
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	2 cut(s)	75, 143
BfoI	RGCGCY	1 cut(s)	517
BisI	GCNGC	2 cut(s)	48, 421
BlsI	GCNGC	2 cut(s)	49, 422
Bme1390I	CCNGG	3 cut(s)	24, 85, 344
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	2 cut(s)	88, 315
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	3 cut(s)	24, 85, 344
BmrI	ACTGGG	2 cut(s)	52, 455
BmsI	GCATC	1 cut(s)	97
BmuI	ACTGGG	2 cut(s)	52, 455
BpmI	CTGGAG	1 cut(s)	365
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	4 cut(s)	83, 84, 205, 342
Bse1I	ACTGG	2 cut(s)	47, 450
BseBI	CCWGG	3 cut(s)	24, 85, 344
BseDI	CCNNGG	4 cut(s)	83, 84, 205, 342
BseGI	GGATG	1 cut(s)	385
BseNI	ACTGG	2 cut(s)	47, 450
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	59, 407
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	78
BsmAI	GTCTC	2 cut(s)	341, 458
BsmFI	GGGAC	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	458
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	115, 243, 500
BspANI	GGCC	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	110, 508
BspTNI	GGTCTC	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	47, 450
BssECI	CCNNGG	4 cut(s)	83, 84, 205, 342
BssMI	GATC	3 cut(s)	115, 243, 500
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	3 cut(s)	24, 85, 344
Bst4CI	ACNGT	2 cut(s)	367, 405
Bst6I	CTCTTC	2 cut(s)	339, 485
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	385
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	2 cut(s)	328, 516
BstKTI	GATC	3 cut(s)	118, 246, 503
BstMAI	GTCTC	2 cut(s)	341, 458
BstMBI	GATC	3 cut(s)	115, 243, 500
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 323
BstNI	CCWGG	3 cut(s)	24, 85, 344
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	3 cut(s)	22, 83, 342
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	59, 407
BstX2I	RGATCY	1 cut(s)	500
BstYI	RGATCY	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	36, 423
Cac8I	GCNNGC	1 cut(s)	296
CfoI	GCGC	2 cut(s)	328, 516
Cfr13I	GGNCC	2 cut(s)	88, 315
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	34, 202, 285
CviAII	CATG	3 cut(s)	250, 295, 376
CviJI	RGCY	3 cut(s)	50, 169, 317
CviKI_1	RGCY	3 cut(s)	50, 169, 317
CviQI	GTAC	3 cut(s)	34, 202, 285
DpnI	GATC	3 cut(s)	117, 245, 502
DpnII	GATC	3 cut(s)	115, 243, 500
DraI	TTTAAA	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	339, 485
EarI	CTCTTC	2 cut(s)	339, 485
Eco130I	CCWWGG	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	88
Eco47III	AGCGCT	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	3 cut(s)	22, 83, 342
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	3 cut(s)	253, 298, 379
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	3 cut(s)	249, 294, 375
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	48, 421
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	48, 421
FspBI	CTAG	2 cut(s)	75, 143
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	2 cut(s)	327, 515
GluI	GCNGC	2 cut(s)	48, 421
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	517
HaeIII	GGCC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	328, 516
Hin1II	CATG	3 cut(s)	253, 298, 379
Hin6I	GCGC	2 cut(s)	326, 514
HinP1I	GCGC	2 cut(s)	326, 514
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	1 cut(s)	428
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	4 cut(s)	20, 36, 370, 443
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	4 cut(s)	20, 36, 370, 443
HpyAV	CCTTC	3 cut(s)	140, 269, 491
HpyCH4III	ACNGT	2 cut(s)	367, 405
HpyCH4V	TGCA	3 cut(s)	20, 96, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 323
Hsp92II	CATG	3 cut(s)	253, 298, 379
HspAI	GCGC	2 cut(s)	326, 514
Kzo9I	GATC	3 cut(s)	115, 243, 500
Lsp1109I	GCAGC	2 cut(s)	59, 407
LweI	GCATC	1 cut(s)	97
MabI	ACCWGGT	1 cut(s)	22
MaeI	CTAG	2 cut(s)	75, 143
MalI	GATC	3 cut(s)	117, 245, 502
MboI	GATC	3 cut(s)	115, 243, 500
MboII	GAAGA	2 cut(s)	326, 502
MflI	RGATCY	1 cut(s)	500
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	3 cut(s)	12, 254, 474
MnlI	CCTC	2 cut(s)	123, 288
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	239, 360
MslI	CAYNNNNRTG	1 cut(s)	378
MspR9I	CCNGG	3 cut(s)	24, 85, 344
Mva1269I	GAATGC	1 cut(s)	133
MvaI	CCWGG	3 cut(s)	24, 85, 344
MwoI	GCNNNNNNNGC	2 cut(s)	139, 323
NdeII	GATC	3 cut(s)	115, 243, 500
NlaIII	CATG	3 cut(s)	253, 298, 379
NlaIV	GGNNCC	1 cut(s)	89
NsbI	TGCGCA	1 cut(s)	327
NspI	RCATGY	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	298
PasI	CCCWGGG	1 cut(s)	84
PctI	GAATGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	2 cut(s)	49, 422
PpuMI	RGGWCCY	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	22, 83, 342
PspGI	CCWGG	3 cut(s)	22, 83, 342
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	88, 315
PspPPI	RGGWCCY	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	500
RsaI	GTAC	3 cut(s)	35, 203, 286
RsaNI	GTAC	3 cut(s)	34, 202, 285
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	239, 360
SatI	GCNGC	2 cut(s)	48, 421
Sau3AI	GATC	3 cut(s)	115, 243, 500
Sau96I	GGNCC	2 cut(s)	88, 315
ScrFI	CCNGG	3 cut(s)	24, 85, 344
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	7 cut(s)	28, 52, 151, 171, 184, 401, 470
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	378
SpeI	ACTAGT	1 cut(s)	74
SphI	GCATGC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	12, 254, 474
SspMI	CTAG	2 cut(s)	75, 143
StyD4I	CCNGG	3 cut(s)	22, 83, 342
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	2 cut(s)	367, 405
TasI	AATT	3 cut(s)	12, 254, 474
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	2 cut(s)	239, 360
Tru9I	TTAA	2 cut(s)	239, 360
TscAI	CASTG	2 cut(s)	43, 430
TseI	GCWGC	2 cut(s)	47, 420
TspDTI	ATGAA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	43, 430
VneI	GTGCAC	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	2 cut(s)	75, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.