RchiOBHm_Chr2g0118241

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016441
Physical Location & Seq
Forward (+)
30568430 .. 30571099
2670 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGAGAGTGAGAACGAGATCATTTCCTCTGATACTTGGTATCAAATCATCATCTCATAATATGAATATTATTTTGGATGGAGCCATGTGGTCCATCAGATATTTGTGGCAACATGTATTGGGGATTGTCTTGCATGATAATGACAAGGAGGACATACTGTCGCGGTTTCTATCGAAGAGTGAGAAGAATCCGGAAGAGATGAATGATAAATATCTAAGTGAAATAATTCTGAACTTCATGATTTCTAGGAAAGATACCAGTGCAAATTCACTCTTATGGTTCTTCTACATGCTCAGCAAGAACCCTCTAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

104

Amino Acids

12.27

Weight (kDa)

9.05

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 102 1.3e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 163
AccIII TCCGGA 1 cut(s) 190
AciI CCGC 1 cut(s) 163
AcsI RAATTY 1 cut(s) 265
AflIII ACRYGT 1 cut(s) 112
AhdI GACNNNNNGTC 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
Aor13HI TCCGGA 1 cut(s) 190
ApoI RAATTY 1 cut(s) 265
Asp700I GAANNNNTTC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 90
AvaII GGWCC 1 cut(s) 90
BccI CCATC 2 cut(s) 71, 101
BfaI CTAG 1 cut(s) 246
BlpI GCTNAGC 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 90
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 1 cut(s) 82
Bpu1102I GCTNAGC 1 cut(s) 293
BsaBI GATNNNNATC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 258
Bse8I GATNNNNATC 1 cut(s) 210
BseAI TCCGGA 1 cut(s) 190
BseGI GGATG 1 cut(s) 82
BseJI GATNNNNATC 1 cut(s) 210
BseMII CTCAG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 191
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 1 cut(s) 17
Bsp1720I GCTNAGC 1 cut(s) 293
BspACI CCGC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 306
BspEI TCCGGA 1 cut(s) 190
BspFNI CGCG 1 cut(s) 163
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 258
BssMI GATC 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 170, 189
BstDEI CTNAG 2 cut(s) 215, 293
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 1 cut(s) 163
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 116, 292
BstUI CGCG 1 cut(s) 163
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 265
CciI TCATGA 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 90
CviAII CATG 6 cut(s) 85, 113, 134, 238, 289, 312
CviJI RGCY 1 cut(s) 83
CviKI_1 RGCY 1 cut(s) 83
DdeI CTNAG 2 cut(s) 215, 293
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
DriI GACNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 170, 189
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 2 cut(s) 170, 189
Eco47I GGWCC 1 cut(s) 90
FaeI CATG 6 cut(s) 88, 116, 137, 241, 292, 315
FatI CATG 6 cut(s) 84, 112, 133, 237, 288, 311
FokI GGATG 1 cut(s) 89
FspBI CTAG 1 cut(s) 246
HapII CCGG 1 cut(s) 191
Hin1II CATG 6 cut(s) 88, 116, 137, 241, 292, 315
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 191
Hpy188I TCNGA 3 cut(s) 30, 98, 231
Hpy188III TCNNGA 2 cut(s) 191, 238
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 2 cut(s) 133, 263
HpyF3I CTNAG 2 cut(s) 215, 293
Hsp92II CATG 6 cut(s) 88, 116, 137, 241, 292, 315
Kpn2I TCCGGA 1 cut(s) 190
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 2 cut(s) 204, 271
MaeI CTAG 1 cut(s) 246
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 4 cut(s) 187, 196, 206, 274
MluCI AATT 2 cut(s) 225, 265
MnlI CCTC 3 cut(s) 36, 142, 315
MroI TCCGGA 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 138, 274
MspI CCGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 163
NdeII GATC 1 cut(s) 17
NlaIII CATG 6 cut(s) 88, 116, 137, 241, 292, 315
NlaIV GGNNCC 1 cut(s) 82
NspI RCATGY 2 cut(s) 116, 292
PagI TCATGA 1 cut(s) 237
PciI ACATGT 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 187
PscI ACATGT 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 90
RseI CAYNNNNRTG 2 cut(s) 138, 274
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 90
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 138, 274
Sse9I AATT 2 cut(s) 225, 265
SsiI CCGC 1 cut(s) 163
SspI AATATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 173
TasI AATT 2 cut(s) 225, 265
TfiI GAWTC 1 cut(s) 187
TscAI CASTG 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 77, 215, 226
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 90
XapI RAATTY 1 cut(s) 265
XceI RCATGY 2 cut(s) 116, 292
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.