Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016441

Physical Location & Seq

Genomic Coordinates Forward (+)

30262234 .. 30264066

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTGTTCGTGTGATGATAGACGGCTAAGAGTTAAACGAGTTTGTTGTGTTATCTGGTTTCGAGATGTAACCTTTCTCAACTCGGGTTTTCAGACAAAGGGAAGAAGCAGGCGGCCGGTGAGGGCTGCAGAGATCATTTGCATCAGTTCATGGGGTCGCTTGAAGGTGGACAAGATATATCTTAGCACTCCTGCAAAGATTGCAATTATGGATCATGAGAAGAAGAGAACATTTGTAATACGCAAAGATGGTCTTCCAGGTGCTGGTAGTGATAGTAAGGACAGTGGAAATTTCATATCAATCAACTGCCACATAGCCTTGTCCCAATCACTTGTGGTTGACAATGTGAAGCCTGTTCCTACATTCTGTCCAGGGTGTGGAATTCTTGGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATGATGAGTACAAACATATGCTCTCTGTGGAGGCTGCTGCTATTGAGAGACCTATCACATTGAAACCTGGAGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldose_epim

Protein Analysis

168

Amino Acids

18.52

Weight (kDa)

9.17

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016441)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118241 RchiOBHm_Chr2g0123031
rosa_laevigata	RLG00000008416 RLG00000023056
rosa_roxburghii	Rroxscaffold_1G00021090
rosa_rugosa	Rorug01G0216100
rosa_samantha	Rh1CG004200 Rh4AG049200 Rh4AG161400 Rh5DG126500 Rh6AG370200 Rh6DG213100 Rh7DG392200 Rh7DG401400
rosa_wichuraiana	Rw5G011890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	263, 377
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	289, 381
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	263, 377
AgsI	TTSAA	2 cut(s)	163, 487
AjnI	CCWGG	3 cut(s)	256, 370, 490
Alw26I	GTCTC	2 cut(s)	466, 489
AlwI	GGATC	1 cut(s)	219
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	3 cut(s)	125, 458, 461
ApoI	RAATTY	2 cut(s)	289, 381
AsuHPI	GGTGA	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	112, 445, 448
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	38
BciT130I	CCWGG	3 cut(s)	258, 372, 492
BcoDI	GTCTC	2 cut(s)	466, 489
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	4 cut(s)	113, 126, 459, 462
BlsI	GCNGC	4 cut(s)	114, 127, 460, 463
Bme1390I	CCNGG	3 cut(s)	258, 372, 492
BmeT110I	CYCGRG	1 cut(s)	82
BmrFI	CCNGG	3 cut(s)	258, 372, 492
BmsI	GCATC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 377
Bse118I	RCCGGY	1 cut(s)	115
BseBI	CCWGG	3 cut(s)	258, 372, 492
BseDI	CCNNGG	1 cut(s)	371
BseLI	CCNNNNNNNGG	2 cut(s)	263, 377
BseX3I	CGGCCG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	112, 445, 448
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	1 cut(s)	115
BsiEI	CGRYCG	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	263, 377
BsmAI	GTCTC	2 cut(s)	466, 489
BsmBI	CGTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	466
BsoBI	CYCGRG	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	132, 211
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	115
BspHI	TCATGA	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	371
BssMI	GATC	2 cut(s)	132, 211
Bst2UI	CCWGG	3 cut(s)	258, 372, 492
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	26, 182
BstKTI	GATC	2 cut(s)	135, 214
BstMAI	GTCTC	2 cut(s)	466, 489
BstMBI	GATC	2 cut(s)	132, 211
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	3 cut(s)	258, 372, 492
BstSCI	CCNGG	3 cut(s)	256, 370, 490
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	3 cut(s)	112, 445, 448
BstV2I	GAAGAC	1 cut(s)	245
BstZI	CGGCCG	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	263
CciI	TCATGA	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	150, 215
CviJI	RGCY	8 cut(s)	25, 115, 125, 317, 352, 407, 413, 458
CviKI_1	RGCY	8 cut(s)	25, 115, 125, 317, 352, 407, 413, 458
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	2 cut(s)	26, 182
DpnI	GATC	2 cut(s)	134, 213
DpnII	GATC	2 cut(s)	132, 211
EaeI	YGGCCR	1 cut(s)	113
EagI	CGGCCG	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EclXI	CGGCCG	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	466
Eco52I	CGGCCG	1 cut(s)	113
Eco88I	CYCGRG	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	381
EcoRII	CCWGG	3 cut(s)	256, 370, 490
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	2 cut(s)	153, 218
FaiI	YATR	9 cut(s)	151, 178, 209, 216, 296, 314, 410, 441, 443
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	2 cut(s)	149, 214
FauNDI	CATATG	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	113, 126, 459, 462
Fsp4HI	GCNGC	4 cut(s)	113, 126, 459, 462
GluI	GCNGC	4 cut(s)	113, 126, 459, 462
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	2 cut(s)	153, 218
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	169, 340
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	62, 215
Hpy8I	GTNNAC	2 cut(s)	169, 340
HpyAV	CCTTC	2 cut(s)	157, 391
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	128, 141, 194, 203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	26, 182
Hsp92II	CATG	2 cut(s)	153, 218
Kzo9I	GATC	2 cut(s)	132, 211
Lsp1109I	GCAGC	3 cut(s)	112, 445, 448
LweI	GCATC	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	134, 213
MboI	GATC	2 cut(s)	132, 211
MboII	GAAGA	4 cut(s)	114, 232, 235, 245
MluCI	AATT	3 cut(s)	204, 289, 381
MnlI	CCTC	2 cut(s)	114, 448
MseI	TTAA	1 cut(s)	33
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	3 cut(s)	258, 372, 492
MvaI	CCWGG	3 cut(s)	258, 372, 492
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeI	CATATG	1 cut(s)	441
NdeII	GATC	2 cut(s)	132, 211
NlaIII	CATG	2 cut(s)	153, 218
PagI	TCATGA	1 cut(s)	214
PflMI	CCANNNNNTGG	2 cut(s)	263, 377
PkrI	GCNGC	4 cut(s)	114, 127, 460, 463
Psp6I	CCWGG	3 cut(s)	256, 370, 490
PspGI	CCWGG	3 cut(s)	256, 370, 490
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	4 cut(s)	113, 126, 459, 462
Sau3AI	GATC	2 cut(s)	132, 211
ScrFI	CCNGG	3 cut(s)	258, 372, 492
SetI	ASST	5 cut(s)	74, 168, 262, 478, 493
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	126
Sse9I	AATT	3 cut(s)	204, 289, 381
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	3 cut(s)	256, 370, 490
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	61
TasI	AATT	3 cut(s)	204, 289, 381
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	3 cut(s)	125, 458, 461
TspDTI	ATGAA	2 cut(s)	138, 283
TspRI	CASTG	1 cut(s)	289
Van91I	CCANNNNNTGG	2 cut(s)	263, 377
XapI	RAATTY	2 cut(s)	289, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.