Rh4AG161400

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0016441
Physical Location & Seq
Reverse (-)
41025676 .. 41027938
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG161400.1

Sequence Viewer

Length: 627 bp
ATGCAGAACAGGAAATGTTGTACTGAGCAAGGGGTTGCTATAATATTTGAATTGGAGGTGGACAAGATATATCTTAGCACTCCTACAAAGATTGCAATTATGGATCATGAGAAGAAGAGAACATTTGTAATACGCAAAGATGGTCTTCCAGATGACGGTAGTGATGGTAAGGATAGTGGAAATTTCATATCAATCAACTGCCACATAGCCTTGTCCCAACCATTTGTGGTTGACGATGTGAAGCTGGCCTGTTCCTACATTCTGTCCGTTTCTTTCATCCAGTGGTGTGGAATCCTTGGGGATAAGAAGGCAAAGGCTATGGCTGATTTTGGAGATGATGAGTACAAAGTACAAACATATGCTCTCTGTGGAGGCTGCGCTGTTATTGAGAGACCTATCACATTGAAACCTGGAGATGAGTGGAGAGGGCGGCAGGAGCAAGGTGCGAAAGGATTGCTTTTTGCACCTTTATCTTTTGGTTTTACACTATTCCTTATCAAAATGATAACGCATATCTCAGCTAGTGTAATTCTCATATACCTGTATATTCATGACGTCAAGCAAGCAGAAAAATGCTACAATGATTGCTCCCGGGTCGATGCTTTTTTGGGCAATGATCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

208

Amino Acids

23.17

Weight (kDa)

5.95

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 558
AciI CCGC 1 cut(s) 430
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 3 cut(s) 22, 344, 351
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 2 cut(s) 50, 406
AjnI CCWGG 1 cut(s) 409
AluBI AGCT 2 cut(s) 244, 521
AluI AGCT 2 cut(s) 244, 521
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 591
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 375
ApoI RAATTY 1 cut(s) 181
AspLEI GCGC 1 cut(s) 380
AsuC2I CCSGG 2 cut(s) 592, 593
AvaI CYCGRG 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 362
BccI CCATC 2 cut(s) 134, 158
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BciT130I CCWGG 1 cut(s) 411
BclI TGATCA 1 cut(s) 616
BcnI CCSGG 2 cut(s) 592, 593
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 522
BisI GCNGC 2 cut(s) 376, 431
BlsI GCNGC 2 cut(s) 377, 432
Bme1390I CCNGG 3 cut(s) 411, 592, 593
BmeT110I CYCGRG 1 cut(s) 591
BmrFI CCNGG 3 cut(s) 411, 592, 593
BmsI GCATC 1 cut(s) 589
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 1 cut(s) 432
BpuMI CCSGG 2 cut(s) 592, 593
BsaHI GRCGYC 1 cut(s) 555
BsaI GGTCTC 1 cut(s) 385
BsaJI CCNNGG 2 cut(s) 295, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 619
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 295, 591
BseGI GGATG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 619
BseMII CTCAG 2 cut(s) 15, 531
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 362
BshFI GGCC 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 385
BsoBI CYCGRG 1 cut(s) 591
Bsp143I GATC 2 cut(s) 103, 616
BspACI CCGC 1 cut(s) 430
BspANI GGCC 1 cut(s) 248
BspCNI CTCAG 2 cut(s) 16, 530
BspHI TCATGA 2 cut(s) 106, 550
BspPI GGATC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 385
BsrDI GCAATG 1 cut(s) 619
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 2 cut(s) 295, 591
BssMI GATC 2 cut(s) 103, 616
BssNI GRCGYC 1 cut(s) 555
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 555
BstC8I GCNNGC 2 cut(s) 246, 564
BstDEI CTNAG 3 cut(s) 24, 74, 517
BstF5I GGATG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 2 cut(s) 106, 619
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 103, 616
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 3 cut(s) 409, 590, 591
BstV1I GCAGC 1 cut(s) 362
BstV2I GAAGAC 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 287
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 246, 564
CciI TCATGA 2 cut(s) 106, 550
CfoI GCGC 1 cut(s) 380
Cfr9I CCCGGG 1 cut(s) 591
Csp6I GTAC 3 cut(s) 21, 343, 350
CviAII CATG 3 cut(s) 107, 551, 620
CviJI RGCY 8 cut(s) 209, 244, 248, 317, 323, 375, 521, 624
CviKI_1 RGCY 8 cut(s) 209, 244, 248, 317, 323, 375, 521, 624
CviQI GTAC 3 cut(s) 21, 343, 350
DdeI CTNAG 3 cut(s) 24, 74, 517
DpnI GATC 2 cut(s) 105, 618
DpnII GATC 2 cut(s) 103, 616
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 295
Eco31I GGTCTC 1 cut(s) 385
Eco88I CYCGRG 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 3 cut(s) 110, 554, 623
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 441, 473
FaqI GGGAC 1 cut(s) 199
FatI CATG 3 cut(s) 106, 550, 619
FauNDI CATATG 1 cut(s) 358
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 2 cut(s) 376, 431
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 2 cut(s) 376, 431
FspBI CTAG 1 cut(s) 522
GlaI GCGC 1 cut(s) 379
GluI GCNGC 2 cut(s) 376, 431
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 592
HhaI GCGC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 3 cut(s) 110, 554, 623
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 1 cut(s) 291
HpaII CCGG 1 cut(s) 592
Hpy166II GTNNAC 2 cut(s) 61, 232
Hpy188III TCNNGA 3 cut(s) 107, 149, 551
Hpy8I GTNNAC 2 cut(s) 61, 232
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 3 cut(s) 4, 95, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 3 cut(s) 24, 74, 517
HpySE526I ACGT 1 cut(s) 555
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 3 cut(s) 110, 554, 623
HspAI GCGC 1 cut(s) 378
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 2 cut(s) 103, 616
LmnI GCTCC 2 cut(s) 436, 593
LpnPI CCDG 9 cut(s) 162, 230, 262, 293, 396, 419, 423, 554, 605
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 1 cut(s) 589
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 555
MalI GATC 2 cut(s) 105, 618
MboI GATC 2 cut(s) 103, 616
MboII GAAGA 3 cut(s) 124, 127, 137
MluCI AATT 4 cut(s) 50, 96, 181, 528
MnlI CCTC 3 cut(s) 49, 365, 419
MspI CCGG 1 cut(s) 592
MspR9I CCNGG 3 cut(s) 411, 592, 593
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 436
NciI CCSGG 2 cut(s) 592, 593
NdeI CATATG 1 cut(s) 358
NdeII GATC 2 cut(s) 103, 616
NlaIII CATG 3 cut(s) 110, 554, 623
PagI TCATGA 2 cut(s) 106, 550
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 2 cut(s) 377, 432
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
RsaI GTAC 3 cut(s) 22, 344, 351
RsaNI GTAC 3 cut(s) 21, 343, 350
SatI GCNGC 2 cut(s) 376, 431
Sau3AI GATC 2 cut(s) 103, 616
ScrFI CCNGG 3 cut(s) 411, 592, 593
SetI ASST 9 cut(s) 60, 246, 397, 412, 445, 469, 523, 543, 558
SfaNI GCATC 1 cut(s) 589
SmaI CCCGGG 1 cut(s) 593
Sse9I AATT 4 cut(s) 50, 96, 181, 528
SsiI CCGC 1 cut(s) 430
SspI AATATT 1 cut(s) 45
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 3 cut(s) 409, 590, 591
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 1 cut(s) 558
TaqI TCGA 1 cut(s) 597
TasI AATT 4 cut(s) 50, 96, 181, 528
TatI WGTACW 3 cut(s) 20, 342, 349
TauI GCSGC 1 cut(s) 433
TfiI GAWTC 1 cut(s) 291
TscAI CASTG 1 cut(s) 287
TseI GCWGC 1 cut(s) 375
TspDTI ATGAA 3 cut(s) 175, 265, 539
TspGWI ACGGA 1 cut(s) 256
TspMI CCCGGG 1 cut(s) 591
TspRI CASTG 1 cut(s) 287
XapI RAATTY 1 cut(s) 181
XmaI CCCGGG 1 cut(s) 591
XspI CTAG 1 cut(s) 522
ZraI GACGTC 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.