Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0016441

Physical Location & Seq

Genomic Coordinates Forward (+)

521363 .. 532586

Gene Structure 11224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG004200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCAACAGTGGGTAATACAGTTGAATCAGGAAGTCAAGATTCAACAACTGAGCTTGATGCACCTCTCCGCATCAAATTTAAGAGGCTTGATAAAACTGGCAAGCACATAATGCAGGCGTGCATCTATCTCTTGGCATTGATTCTAGATAAGGAAGCTGTAGAGGAAGTGAGGAGGCAGAGAGAAATACCTGATATAAAGCCTGGTTATTTCGTGCAACTCAGAGTGTTAGTATATGAGGATAGTATTGCAGCAATAGAGATTGATTCTGTGAATTTCAGGCGCCGCCATTGTTTCTCCTCTCTCGAACTCAATGACAAGGAGGACATACTGTCGCGGTTTCTATTGGAGAGTGAGAAGAATCCGGAGGAGATGAATGATAAATATCTAAGCGAAATAATTCTGAACTTCATGATTTCTGGGAAAGATACCAGTGCAAATTCACTCTTATGGGTTGATGAAATAAAAATCACTAATGCTTTACAATATGCAACTAGTATTGAGTACGTTATAAGACCTAATACTGGTGCTGCGCAGCTGACCAAAGATAAATTCAAGAAACCAAACATTGGCCGTGTTTTTCATTACCAAACGCTGTGTAGACTGATAAATATAAAGATGTGCACACATGAAGAGGTGAGTTTCATCTCAGCAGAGAAATTGAAGCTTCAGAAGTGTTCACTTGAAGTTGTCATTAGCTGGGATGAGCGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L19

Protein Analysis

238

Amino Acids

27.45

Weight (kDa)

5.74

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016441)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118241 RchiOBHm_Chr2g0123031
rosa_laevigata	RLG00000008416 RLG00000023056
rosa_roxburghii	Rroxscaffold_1G00021090
rosa_rugosa	Rorug01G0216100
rosa_samantha	Rh1CG004200 Rh4AG049200 Rh4AG161400 Rh5DG126500 Rh6AG370200 Rh6DG213100 Rh7DG392200 Rh7DG401400
rosa_wichuraiana	Rw5G011890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
Acc16I	TGCGCA	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	282
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	337
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	3 cut(s)	70, 286, 337
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	4 cut(s)	77, 274, 439, 551
AcuI	CTGAAG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	1 cut(s)	506
AfiI	CCNNNNNNNGG	2 cut(s)	524, 569
AgsI	TTSAA	5 cut(s)	26, 45, 556, 664, 686
AhdI	GACNNNNNGTC	1 cut(s)	331
AhlI	ACTAGT	1 cut(s)	494
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	5 cut(s)	55, 158, 538, 667, 699
AluI	AGCT	5 cut(s)	55, 158, 538, 667, 699
Alw21I	GWGCWC	1 cut(s)	626
Alw44I	GTGCAC	1 cut(s)	622
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	1 cut(s)	571
ApaLI	GTGCAC	1 cut(s)	622
ApeKI	GCWGC	3 cut(s)	251, 530, 535
ApoI	RAATTY	4 cut(s)	77, 274, 439, 551
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	285, 535
AsuHPI	GGTGA	1 cut(s)	649
BaeGI	GKGCMC	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	626
BbvI	GCAGC	3 cut(s)	263, 517, 547
BceAI	ACGGC	1 cut(s)	558
BciT130I	CCWGG	1 cut(s)	204
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	2 cut(s)	146, 495
BfmI	CTRYAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	4 cut(s)	252, 286, 531, 536
BlsI	GCNGC	4 cut(s)	253, 287, 532, 537
Bme1390I	CCNGG	1 cut(s)	204
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	3 cut(s)	49, 81, 132
BsaBI	GATNNNNATC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	283
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 569
Bse1I	ACTGG	3 cut(s)	103, 432, 529
Bse8I	GATNNNNATC	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	709
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	524, 569
BseMII	CTCAG	3 cut(s)	42, 235, 663
BseNI	ACTGG	3 cut(s)	103, 432, 529
BseRI	GAGGAG	3 cut(s)	187, 289, 383
BseSI	GKGCMC	1 cut(s)	626
BseXI	GCAGC	3 cut(s)	263, 517, 547
BseYI	CCCAGC	1 cut(s)	699
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	573
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	626
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	524, 569
BsnI	GGCC	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp13I	TCCGGA	1 cut(s)	364
BspACI	CCGC	3 cut(s)	70, 286, 337
BspANI	GGCC	1 cut(s)	573
BspCNI	CTCAG	3 cut(s)	43, 234, 662
BspEI	TCCGGA	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	282
BsrI	ACTGG	3 cut(s)	103, 432, 529
BssNI	GRCGYC	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	10, 22, 333
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	3 cut(s)	104, 117, 121
BstDEI	CTNAG	4 cut(s)	51, 221, 389, 649
BstF5I	GGATG	1 cut(s)	709
BstFNI	CGCG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	2 cut(s)	285, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	626
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	263, 517, 547
BsuRI	GGCC	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	709
BtsIMutI	CAGTG	2 cut(s)	15, 439
Cac8I	GCNNGC	3 cut(s)	104, 117, 121
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	2 cut(s)	285, 535
Csp6I	GTAC	1 cut(s)	505
CviAII	CATG	2 cut(s)	412, 629
CviJI	RGCY	8 cut(s)	55, 88, 158, 202, 538, 573, 667, 699
CviKI_1	RGCY	8 cut(s)	55, 88, 158, 202, 538, 573, 667, 699
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	4 cut(s)	51, 221, 389, 649
DinI	GGCGCC	1 cut(s)	284
DriI	GACNNNNNGTC	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	627
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	627
Eco57I	CTGAAG	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	202
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
FaeI	CATG	2 cut(s)	415, 632
FatI	CATG	2 cut(s)	411, 628
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	4 cut(s)	252, 286, 531, 536
Fsp4HI	GCNGC	4 cut(s)	252, 286, 531, 536
FspBI	CTAG	2 cut(s)	146, 495
FspI	TGCGCA	1 cut(s)	534
GlaI	GCGC	2 cut(s)	284, 534
GluI	GCNGC	4 cut(s)	252, 286, 531, 536
GsaI	CCCAGC	1 cut(s)	703
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	1 cut(s)	365
HhaI	GCGC	2 cut(s)	285, 535
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	415, 632
Hin6I	GCGC	2 cut(s)	283, 533
HinP1I	GCGC	2 cut(s)	283, 533
HindIII	AAGCTT	1 cut(s)	665
HinfI	GANTC	5 cut(s)	26, 41, 142, 266, 361
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	3 cut(s)	602, 624, 680
Hpy188I	TCNGA	3 cut(s)	224, 405, 672
Hpy188III	TCNNGA	7 cut(s)	30, 38, 146, 305, 365, 412, 556
Hpy8I	GTNNAC	3 cut(s)	602, 624, 680
HpyCH4III	ACNGT	3 cut(s)	10, 22, 333
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	8 cut(s)	62, 115, 123, 217, 251, 437, 491, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	4 cut(s)	51, 221, 389, 649
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	415, 632
HspAI	GCGC	2 cut(s)	283, 533
KasI	GGCGCC	1 cut(s)	282
Kpn2I	TCCGGA	1 cut(s)	364
Lsp1109I	GCAGC	3 cut(s)	263, 517, 547
LweI	GCATC	3 cut(s)	49, 81, 132
MaeI	CTAG	2 cut(s)	146, 495
MaeII	ACGT	1 cut(s)	507
MboII	GAAGA	2 cut(s)	370, 644
MhlI	GDGCHC	1 cut(s)	626
MluCI	AATT	6 cut(s)	77, 274, 399, 439, 551, 659
Mly113I	GGCGCC	1 cut(s)	283
MroI	TCCGGA	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	112
NarI	GGCGCC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	415, 632
NlaIV	GGNNCC	1 cut(s)	284
NsbI	TGCGCA	1 cut(s)	534
PagI	TCATGA	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	5 cut(s)	26, 41, 142, 266, 361
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	4 cut(s)	253, 287, 532, 537
PluTI	GGCGCC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	538
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
RseI	CAYNNNNRTG	1 cut(s)	448
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	4 cut(s)	252, 286, 531, 536
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	1 cut(s)	626
SfaNI	GCATC	3 cut(s)	49, 81, 132
SfcI	CTRYAG	1 cut(s)	159
SfoI	GGCGCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	448
SpeI	ACTAGT	1 cut(s)	494
Sse9I	AATT	6 cut(s)	77, 274, 399, 439, 551, 659
SsiI	CCGC	3 cut(s)	70, 286, 337
SspDI	GGCGCC	1 cut(s)	282
SspMI	CTAG	2 cut(s)	146, 495
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	10, 22, 333
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	1 cut(s)	306
TasI	AATT	6 cut(s)	77, 274, 399, 439, 551, 659
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	5 cut(s)	26, 41, 142, 266, 361
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	15, 439
TseI	GCWGC	3 cut(s)	251, 530, 535
TspDTI	ATGAA	6 cut(s)	389, 400, 474, 572, 634, 645
TspRI	CASTG	2 cut(s)	15, 439
Van91I	CCANNNNNTGG	1 cut(s)	569
VneI	GTGCAC	1 cut(s)	622
XapI	RAATTY	4 cut(s)	77, 274, 439, 551
XbaI	TCTAGA	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	2 cut(s)	146, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.