Rroxscaffold_1G00021090

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016441
Physical Location & Seq
Reverse (-)
25804834 .. 25808493
3660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00021090.1

Sequence Viewer

Length: 681 bp
ATGTCAACTAGTTTGGCGGCAATCGACGACGCTAAGTGCCGCGGTGACTCACGGCGAGTTTTCCGAGTCGGGAGTGCGGACGAGAACACCGTAGCGATTGGTGGAGACGAGGACGTGGATAAGGGCGAGAAGCCCCGCCTTTCTTCATATGGAAAATCAATTGAAGAAGGCAAGAGTTTTGGTGATGCTTTTAATAATAATGACAAGGAGGACATACTGTTGCGGTTTCTATTGGAGAGTGAGAAGAATCCGGAGGAGATGAATGATAAATATCTAAGCGACATAATTCTGAACTTCATGATTGCTGGGAAAGATACCAGTGCAAATACACTCTTATGGGTTGATGAAATAAAAATCACTAATGCTTTACAATATGCTGCTAGGATTGAGTACGTTATAAGTTCGTTTATGAATCAAAAGAGGTGTATGAAAGAGAATCCAGTTCGTGGAGTACCAATATTAGTCTTTGGTCAAACTGGGGTTGCATCAGCTGATTCTCCAAATGAGGCCCTTTCTCTTAATTGCAGACCAAATATTGGTGCTGCGCAGCTGACCAAAGATAAATTCAAGTTTCATCTCAGCAGAGATACAGAAGCTTCAGATGTGTTCACTGGAGGTGGCATCGCTATTGCTCTTTGCGACGGCATAGTAGCCGTCGCCATAATTCATGCTACATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

226

Amino Acids

24.58

Weight (kDa)

4.91

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
Acc16I TGCGCA 1 cut(s) 546
AccB7I CCANNNNNTGG 2 cut(s) 446, 536
AccII CGCG 1 cut(s) 42
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 6 cut(s) 17, 40, 42, 77, 136, 223
AcsI RAATTY 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 2 cut(s) 392, 453
AfiI CCNNNNNNNGG 2 cut(s) 446, 536
AgsI TTSAA 2 cut(s) 164, 568
AhlI ACTAGT 1 cut(s) 8
AjiI CACGTC 1 cut(s) 115
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AluBI AGCT 3 cut(s) 491, 550, 596
AluI AGCT 3 cut(s) 491, 550, 596
Alw26I GTCTC 1 cut(s) 99
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 3 cut(s) 377, 542, 547
ApoI RAATTY 1 cut(s) 563
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 508
AsuHPI GGTGA 2 cut(s) 56, 194
BbvI GCAGC 3 cut(s) 364, 529, 559
BceAI ACGGC 3 cut(s) 68, 638, 658
BcoDI GTCTC 1 cut(s) 99
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 381
BisI GCNGC 5 cut(s) 18, 40, 378, 543, 548
BlsI GCNGC 5 cut(s) 19, 41, 379, 544, 549
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 508
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 3 cut(s) 175, 494, 630
BmuI ACTGGG 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 40
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 446, 536
Bse1I ACTGG 4 cut(s) 318, 440, 481, 616
Bse8I GATNNNNATC 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 250
BseDI CCNNGG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 446, 536
BseMII CTCAG 1 cut(s) 592
BseNI ACTGG 4 cut(s) 318, 440, 481, 616
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 3 cut(s) 364, 529, 559
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 509
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 446, 536
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 509
Bsp13I TCCGGA 1 cut(s) 250
BspACI CCGC 6 cut(s) 17, 40, 42, 77, 136, 223
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 1 cut(s) 591
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 1 cut(s) 297
BsrI ACTGG 4 cut(s) 318, 440, 481, 616
BssECI CCNNGG 1 cut(s) 40
Bst4CI ACNGT 2 cut(s) 91, 219
BstDEI CTNAG 3 cut(s) 33, 275, 578
BstDSI CCRYGG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 547
BstMAI GTCTC 1 cut(s) 99
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 3 cut(s) 364, 529, 559
BsuRI GGCC 1 cut(s) 509
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 607
BtrI CACGTC 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 325, 609
CciI TCATGA 1 cut(s) 297
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 508
Cfr42I CCGCGG 1 cut(s) 43
CseI GACGC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 391, 452
CviAII CATG 2 cut(s) 298, 668
CviJI RGCY 6 cut(s) 133, 491, 509, 550, 596, 653
CviKI_1 RGCY 6 cut(s) 133, 491, 509, 550, 596, 653
CviQI GTAC 2 cut(s) 391, 452
DdeI CTNAG 3 cut(s) 33, 275, 578
Eco57I CTGAAG 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 508
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 2 cut(s) 301, 671
FatI CATG 2 cut(s) 297, 667
FauI CCCGC 1 cut(s) 143
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 5 cut(s) 18, 40, 378, 543, 548
Fsp4HI GCNGC 5 cut(s) 18, 40, 378, 543, 548
FspBI CTAG 2 cut(s) 9, 381
FspI TGCGCA 1 cut(s) 546
GlaI GCGC 1 cut(s) 546
GluI GCNGC 5 cut(s) 18, 40, 378, 543, 548
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 1 cut(s) 509
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 547
Hin1II CATG 2 cut(s) 301, 671
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 594
HinfI GANTC 6 cut(s) 47, 66, 247, 412, 436, 494
HpaII CCGG 1 cut(s) 251
HphI GGTGA 2 cut(s) 56, 194
Hpy166II GTNNAC 2 cut(s) 6, 609
Hpy188I TCNGA 3 cut(s) 65, 291, 601
Hpy188III TCNNGA 3 cut(s) 70, 251, 298
Hpy8I GTNNAC 2 cut(s) 6, 609
Hpy99I CGWCG 4 cut(s) 29, 32, 644, 659
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 91, 219
HpyCH4IV ACGT 2 cut(s) 114, 393
HpyCH4V TGCA 3 cut(s) 323, 485, 525
HpyF3I CTNAG 3 cut(s) 33, 275, 578
HpySE526I ACGT 2 cut(s) 114, 393
Hsp92II CATG 2 cut(s) 301, 671
HspAI GCGC 1 cut(s) 545
Kpn2I TCCGGA 1 cut(s) 250
KspI CCGCGG 1 cut(s) 43
LpnPI CCDG 6 cut(s) 264, 291, 331, 453, 462, 597
Lsp1109I GCAGC 3 cut(s) 364, 529, 559
LweI GCATC 3 cut(s) 175, 494, 630
MaeI CTAG 2 cut(s) 9, 381
MaeII ACGT 2 cut(s) 114, 393
MaeIII GTNAC 1 cut(s) 44
MboII GAAGA 3 cut(s) 135, 176, 256
MfeI CAATTG 1 cut(s) 159
MluCI AATT 5 cut(s) 159, 285, 520, 563, 663
MlyI GAGTC 2 cut(s) 41, 75
MnlI CCTC 6 cut(s) 103, 202, 247, 414, 499, 608
MroI TCCGGA 1 cut(s) 250
MseI TTAA 2 cut(s) 192, 519
MslI CAYNNNNRTG 1 cut(s) 334
MspA1I CMGCKG 3 cut(s) 42, 491, 550
MspI CCGG 1 cut(s) 251
MunI CAATTG 1 cut(s) 159
MvnI CGCG 1 cut(s) 42
NdeI CATATG 1 cut(s) 148
NlaIII CATG 2 cut(s) 301, 671
NmuCI GTSAC 1 cut(s) 44
NsbI TGCGCA 1 cut(s) 546
PagI TCATGA 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 4 cut(s) 247, 412, 436, 494
PflMI CCANNNNNTGG 2 cut(s) 446, 536
PkrI GCNGC 5 cut(s) 19, 41, 379, 544, 549
PleI GAGTC 2 cut(s) 41, 74
PpsI GAGTC 2 cut(s) 41, 74
PsiI TTATAA 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 305
PspPI GGNCC 1 cut(s) 508
PvuII CAGCTG 2 cut(s) 491, 550
RsaI GTAC 2 cut(s) 392, 453
RsaNI GTAC 2 cut(s) 391, 452
RseI CAYNNNNRTG 1 cut(s) 334
SacII CCGCGG 1 cut(s) 43
SaqAI TTAA 2 cut(s) 192, 519
SatI GCNGC 5 cut(s) 18, 40, 378, 543, 548
Sau96I GGNCC 1 cut(s) 508
SchI GAGTC 2 cut(s) 41, 75
SetI ASST 7 cut(s) 117, 396, 425, 493, 552, 598, 619
SfaNI GCATC 3 cut(s) 175, 494, 630
Sfr303I CCGCGG 1 cut(s) 43
SgrBI CCGCGG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 334
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 5 cut(s) 159, 285, 520, 563, 663
SsiI CCGC 6 cut(s) 17, 40, 42, 77, 136, 223
SspI AATATT 2 cut(s) 459, 535
SspMI CTAG 2 cut(s) 9, 381
TaaI ACNGT 2 cut(s) 91, 219
TaiI ACGT 2 cut(s) 117, 396
TaqI TCGA 1 cut(s) 24
TasI AATT 5 cut(s) 159, 285, 520, 563, 663
TauI GCSGC 2 cut(s) 20, 42
TfiI GAWTC 4 cut(s) 247, 412, 436, 494
Tru1I TTAA 2 cut(s) 192, 519
Tru9I TTAA 2 cut(s) 192, 519
TscAI CASTG 2 cut(s) 325, 616
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 3 cut(s) 377, 542, 547
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 8 cut(s) 135, 275, 286, 360, 425, 443, 563, 656
TspRI CASTG 2 cut(s) 325, 616
Van91I CCANNNNNTGG 2 cut(s) 446, 536
XapI RAATTY 1 cut(s) 563
XspI CTAG 2 cut(s) 9, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.