Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0016441

Physical Location & Seq

Genomic Coordinates Reverse (-)

13742114 .. 13745102

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G011890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGAGGGTTATATCCAAGGGAGATATCATCTTAATATACTCAAGAGCCAGCAACCTCCTAGGGTTTCTTTCTGATGGGAAGAAGAGTGACCCACAAAAAGTAGCTGATGAGGCTTTATATATGCGTCAAAATGCTTTGGAAGGGTCTAGTGGTAGTGGTGCTGCTTCAGCATATACCGAGGCATTTCGTATCTTCATGTGGTTTGCTGTTAGTGGTAAATCATTTCTTGTCATCATCGCTGCTGCAAGATGTTTGAAGGCATTTGATATTATTGGAAGACTGGGTTTAGGGATGGAAGAACTTGACAATTCAGCTTCTTTCTGTGTCAAGCGGTTTTTCAGACAAAGGGAAGAAGCAGGCGGTGAGGGCGGCAGAGATCATTGCATCAGTTCATGGGGTCGCTCGAAGAACAGGAAATGTTGTACTGAGCAAGGGGATGCTATAACATTTGAATCAGAGGTGGACAAGATATATCTTAGCAATCCTACAAAGATTGCAATTGTGGATCATGAGAAGAACAGAACATTTGTAATACGCAAAGATGGTCTTCCAGATGCCGGTAGTGATAGTAAGGATAGTGGAAATTTCATATCAATCAACTGCCACATAGCCTTGTCCCAACCATTTGTGGTTGACGATGTGAAGCCTGTTCCTACATGCTGTCCAGTTATTTATAAGGAACATACTTTTATGAAAAGAAGAAAGTACAATGCAGAGGACATTATGTTTACTGAAATAGCTAACTATCTAGTTTACATCTCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.47

Weight (kDa)

8.35

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016441)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0118241 RchiOBHm_Chr2g0123031
rosa_laevigata	RLG00000008416 RLG00000023056
rosa_roxburghii	Rroxscaffold_1G00021090
rosa_rugosa	Rorug01G0216100
rosa_samantha	Rh1CG004200 Rh4AG049200 Rh4AG161400 Rh5DG126500 Rh6AG370200 Rh6DG213100 Rh7DG392200 Rh7DG401400
rosa_wichuraiana	Rw5G011890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	678
AciI	CCGC	3 cut(s)	334, 363, 372
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	586
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	2 cut(s)	427, 710
AfiI	CCNNNNNNNGG	1 cut(s)	560
AgsI	TTSAA	2 cut(s)	259, 455
AluBI	AGCT	3 cut(s)	107, 317, 743
AluI	AGCT	3 cut(s)	107, 317, 743
AlwI	GGATC	1 cut(s)	516
ApeKI	GCWGC	3 cut(s)	164, 242, 245
ApoI	RAATTY	1 cut(s)	586
AspA2I	CCTAGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	377
AvrII	CCTAGG	1 cut(s)	61
BbsI	GAAGAC	2 cut(s)	286, 542
BbvI	GCAGC	3 cut(s)	151, 229, 232
BccI	CCATC	3 cut(s)	71, 289, 539
BfaI	CTAG	3 cut(s)	62, 150, 752
BisI	GCNGC	4 cut(s)	165, 243, 246, 373
BlnI	CCTAGG	1 cut(s)	61
BlsI	GCNGC	4 cut(s)	166, 244, 247, 374
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	3 cut(s)	396, 430, 547
BmuI	ACTGGG	1 cut(s)	293
BpiI	GAAGAC	2 cut(s)	286, 542
BpuEI	CTTGAG	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	18, 61, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	560
Bse118I	RCCGGY	1 cut(s)	560
Bse1I	ACTGG	2 cut(s)	288, 668
Bse3DI	GCAATG	1 cut(s)	382
BseDI	CCNNGG	3 cut(s)	18, 61, 180
BseGI	GGATG	2 cut(s)	300, 445
BseLI	CCNNNNNNNGG	1 cut(s)	560
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	288, 668
BseXI	GCAGC	3 cut(s)	151, 229, 232
BsiSI	CCGG	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	604
Bsp143I	GATC	2 cut(s)	379, 508
BspACI	CCGC	3 cut(s)	334, 363, 372
BspCNI	CTCAG	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	511
BspPI	GGATC	1 cut(s)	516
BsrDI	GCAATG	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	560
BsrI	ACTGG	2 cut(s)	288, 668
BssAI	RCCGGY	1 cut(s)	560
BssECI	CCNNGG	3 cut(s)	18, 61, 180
BssMI	GATC	2 cut(s)	379, 508
BssT1I	CCWWGG	2 cut(s)	18, 61
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	52, 361
BstDEI	CTNAG	2 cut(s)	429, 479
BstF5I	GGATG	2 cut(s)	300, 445
BstKTI	GATC	2 cut(s)	382, 511
BstMBI	GATC	2 cut(s)	379, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 170, 369
BstNSI	RCATGY	1 cut(s)	663
BstV1I	GCAGC	3 cut(s)	151, 229, 232
BstV2I	GAAGAC	2 cut(s)	286, 542
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	300, 445
Cac8I	GCNNGC	2 cut(s)	52, 361
CciI	TCATGA	1 cut(s)	511
Cfr10I	RCCGGY	1 cut(s)	560
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	426, 709
CviAII	CATG	4 cut(s)	199, 396, 512, 660
CviJI	RGCY	7 cut(s)	50, 107, 116, 317, 614, 649, 743
CviKI_1	RGCY	7 cut(s)	50, 107, 116, 317, 614, 649, 743
CviQI	GTAC	2 cut(s)	426, 709
DdeI	CTNAG	2 cut(s)	429, 479
DpnI	GATC	2 cut(s)	381, 510
DpnII	GATC	2 cut(s)	379, 508
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	18, 61
Eco32I	GATATC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	18, 61
ErhI	CCWWGG	2 cut(s)	18, 61
FaeI	CATG	4 cut(s)	202, 399, 515, 663
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	4 cut(s)	198, 395, 511, 659
Fnu4HI	GCNGC	4 cut(s)	165, 243, 246, 373
FokI	GGATG	2 cut(s)	307, 452
Fsp4HI	GCNGC	4 cut(s)	165, 243, 246, 373
FspBI	CTAG	3 cut(s)	62, 150, 752
GluI	GCNGC	4 cut(s)	165, 243, 246, 373
HapII	CCGG	1 cut(s)	561
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	202, 399, 515, 663
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	1 cut(s)	455
HpaII	CCGG	1 cut(s)	561
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	4 cut(s)	466, 637, 732, 757
Hpy188I	TCNGA	3 cut(s)	76, 344, 460
Hpy188III	TCNNGA	3 cut(s)	45, 512, 554
Hpy8I	GTNNAC	4 cut(s)	466, 637, 732, 757
HpyAV	CCTTC	2 cut(s)	137, 253
HpyCH4V	TGCA	4 cut(s)	248, 387, 500, 716
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 170, 369
HpyF3I	CTNAG	2 cut(s)	429, 479
Hsp92II	CATG	4 cut(s)	202, 399, 515, 663
Kzo9I	GATC	2 cut(s)	379, 508
LpnPI	CCDG	8 cut(s)	64, 269, 345, 400, 567, 574, 663, 681
Lsp1109I	GCAGC	3 cut(s)	151, 229, 232
LweI	GCATC	3 cut(s)	396, 430, 547
MaeI	CTAG	3 cut(s)	62, 150, 752
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	2 cut(s)	381, 510
MboI	GATC	2 cut(s)	379, 508
MfeI	CAATTG	1 cut(s)	501
MluCI	AATT	3 cut(s)	310, 501, 586
MnlI	CCTC	6 cut(s)	68, 106, 175, 361, 454, 712
MseI	TTAA	1 cut(s)	35
MspI	CCGG	1 cut(s)	561
MunI	CAATTG	1 cut(s)	501
MwoI	GCNNNNNNNGC	3 cut(s)	113, 170, 369
NdeII	GATC	2 cut(s)	379, 508
NlaIII	CATG	4 cut(s)	202, 399, 515, 663
NmuCI	GTSAC	1 cut(s)	89
NspI	RCATGY	1 cut(s)	663
PagI	TCATGA	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	4 cut(s)	166, 244, 247, 374
PsiI	TTATAA	1 cut(s)	678
RsaI	GTAC	2 cut(s)	427, 710
RsaNI	GTAC	2 cut(s)	426, 709
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	4 cut(s)	165, 243, 246, 373
Sau3AI	GATC	2 cut(s)	379, 508
SetI	ASST	5 cut(s)	60, 109, 319, 465, 745
SfaNI	GCATC	3 cut(s)	396, 430, 547
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	3 cut(s)	310, 501, 586
SsiI	CCGC	3 cut(s)	334, 363, 372
SspMI	CTAG	3 cut(s)	62, 150, 752
StyI	CCWWGG	2 cut(s)	18, 61
TaqI	TCGA	1 cut(s)	407
TasI	AATT	3 cut(s)	310, 501, 586
TatI	WGTACW	2 cut(s)	425, 708
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	3 cut(s)	164, 242, 245
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	187, 384, 580, 710
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	1 cut(s)	663
XmaJI	CCTAGG	1 cut(s)	61
XspI	CTAG	3 cut(s)	62, 150, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.