RchiOBHm_Chr2g0128851

Sodium/calcium exchanger protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
44195654 .. 44199307
3654 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1743 bp
ATGGCAAAGAAAATTGCGTTATTCCTTTATTTCCTATCCATCATGCTAGTTAATCTAACCAGCTTTGGCCAAAGTCGTTCTATTGCTACAAGTGACTTCAATTTAGTGTCTGATGGAGTAAACCACGCTACTGGGGATAAACCCAATTTTCTTTGGTTAAAGCATAGCTTGTTTGCATCCGATAGCTGTGATGAGACATATGGGTTCTTGCCATGCACCAACACAGTCCTTGGTAATATCTTCCTCATTATCGTCTATGGTTACTTGATGTTCCTTTCAGCCAAGTTATTGTCAGCTGGAAGTGAGATTCTGCTGCAAATTTTAGGACCTGGTATCATAGGGGGTCTCTTCTTGCCTCTGTTGAGTGCTGTACCTGATGCCACCATTATCCTTGCATCAGGACTTTCTGGGGACACGGCAACGGCACAAAGTCAGGTCTCCGTTGGAATGGGCTTGCTAGCTGGATCCAATGTAATGCTTCTCACAATCCTATGGGGGACCTGTCTTCTAGTTGGCAAATGTGACCTTGAAAATTCAGTTGCAGTTGATGAAAAAGATACAAAGCGTTTTAGCTTAACTGGATCTGGATCTGGAGTGAGCACAGATATTTGGACAAGCTATGCTGCATGGATCATGGTTATCTCCATTATTCCTTTTGTAATAGTCCAACTACCTCAAGTTTTCACTGCGACTTTGGATAGTAGCTTGCCAATTCTAAGTTCACTCATTGTTGCAATCTGTTTTGTGATCGCTTATAGCATCTATCAGATTTTTCAGCCTTGGATTCAGAAGAGAAGACTTGCATATGCAAAGCATAAGCATGTGATGTCAGAGATTCTAAAACAGTTGAAAACAAACGCGCTTGGAAAATTGCTTACAGATGATGGTGATCCTAACAAAGTTGTTATAGAGAAGTTATTCAGGACACTTGATCAGAACTCGGATGGTTATTTGAACACCACAGACTTAAGATCTTTGATAATAGGAATCCAATTTGATGATGACGTAGATATAAATATCGATGAAGCCATTTCTCAAGTGATGAGAGACTTTGACACAACTCGTGATTCGAAGATTGATGTTGATGAATTCTTCAAAGGAATTTCAAGGTGGCTTAACAAGGCTAAGCGTGCTGCAATGATGGACCGTGGAAAGGCTCCGCTATCAATGAAACTGTTAGATGATTTTGATAAGCAAACAAAGGAAGAACAAGATCGGTATGGGGATCAGATTGATGAGATTGTGGAGGATGTTAAAAATGCAAACTGGCATGCCTCAAAAGCAGTACTGATGTTGCTTCTGGGAACCATTGTTGCTGCTGTGGTTGCTGATCCCCTTGTTGATGCTGTTGACAACTTCTCAACAGCTACAAGTATTCCTACATTCTTCGTATCATTTGTTATTCTGCCTTTTGTTAGCTCCAGTGAGATTGTGTCCACTCTAATTTTTGTCAGCCGGAAGAAGCAGAGAACAGCATCATTGGCCTACTCTGCGATATATGGATCAGTAACAATGAGTAACATCCTCTCCCTGGCAGTGTTCTTGGCTCTTGTATACATTCGAAATCTGACATGGAGCTTCTCGTCTGAAGTTCTTGTCATTATAATTGTCTGCATTCTAATGGGAGTGGTTGCTGGTTTCCGCACCACCTTCCCTGTTTGGATGTCTTTTGGGGCTGTAGCGCTCTATCCACTTTCTCTGTTGCTGGTTTACATTCTTGAATATGTTTTTGGGTGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

580

Amino Acids

63.75

Weight (kDa)

5.13

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 80 - 259 5.4e-07 Sodium/calcium exchanger protein
EF-hand_7 PF13499 302 - 368 3.9e-11 EF-hand domain pair
Na_Ca_ex PF01699 428 - 571 3.1e-11 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015661)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1604
AccI GTMKAC 1 cut(s) 1554
AccII CGCG 1 cut(s) 860
AciI CCGC 2 cut(s) 1160, 1642
AclWI GGATC 9 cut(s) 459, 472, 589, 595, 638, 884, 1233, 1325, 1510
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 4 cut(s) 318, 532, 1088, 1101
AcuI CTGAAG 1 cut(s) 1608
AfaI GTAC 2 cut(s) 372, 1287
AfeI AGCGCT 1 cut(s) 1683
AfiI CCNNNNNNNGG 2 cut(s) 1153, 1531
AflII CTTAAG 1 cut(s) 967
AgsI TTSAA 7 cut(s) 100, 530, 850, 955, 1096, 1107, 1721
AjnI CCWGG 2 cut(s) 328, 1530
AjuI GAANNNNNNNTTGG 3 cut(s) 703, 735, 1713
Alw21I GWGCWC 1 cut(s) 602
Alw26I GTCTC 4 cut(s) 188, 350, 442, 1041
AlwI GGATC 9 cut(s) 459, 472, 589, 595, 638, 884, 1233, 1325, 1510
Aor51HI AGCGCT 1 cut(s) 1683
AoxI GGCC 2 cut(s) 67, 1482
ApeKI GCWGC 4 cut(s) 313, 623, 1133, 1316
ApoI RAATTY 4 cut(s) 318, 532, 1088, 1101
Asp700I GAANNNNTTC 1 cut(s) 917
AspLEI GCGC 2 cut(s) 862, 1684
AspS9I GGNCC 3 cut(s) 326, 498, 1144
AsuHPI GGTGA 1 cut(s) 899
AsuII TTCGAA 2 cut(s) 1070, 1561
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 3 cut(s) 326, 498, 1144
BalI TGGCCA 1 cut(s) 69
BamHI GGATCC 1 cut(s) 464
BauI CACGAG 1 cut(s) 1062
BbsI GAAGAC 2 cut(s) 497, 802
Bbv12I GWGCWC 1 cut(s) 602
BbvI GCAGC 4 cut(s) 300, 610, 1120, 1303
BccI CCATC 5 cut(s) 47, 107, 878, 938, 1135
BceAI ACGGC 2 cut(s) 432, 438
BciT130I CCWGG 2 cut(s) 330, 1532
BclI TGATCA 1 cut(s) 931
BcoDI GTCTC 4 cut(s) 188, 350, 442, 1041
BfaI CTAG 3 cut(s) 47, 458, 509
BfmI CTRYAG 1 cut(s) 1677
BfoI RGCGCY 1 cut(s) 1685
BfrI CTTAAG 1 cut(s) 967
BglII AGATCT 1 cut(s) 971
BisI GCNGC 4 cut(s) 314, 624, 1134, 1317
BlpI GCTNAGC 1 cut(s) 1125
BlsI GCNGC 4 cut(s) 315, 625, 1135, 1318
BmcAI AGTACT 1 cut(s) 1287
Bme1390I CCNGG 2 cut(s) 330, 1532
Bme18I GGWCC 3 cut(s) 326, 498, 1144
BmgT120I GGNCC 3 cut(s) 326, 498, 1144
BmiI GGNNCC 4 cut(s) 466, 499, 1158, 1306
BmrFI CCNGG 2 cut(s) 330, 1532
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 6 cut(s) 185, 367, 404, 768, 1333, 1484
BmtI GCTAGC 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 141
BpiI GAAGAC 2 cut(s) 497, 802
BpmI CTGGAG 2 cut(s) 612, 1405
Bpu1102I GCTNAGC 1 cut(s) 1125
Bpu14I TTCGAA 2 cut(s) 1070, 1561
BpuEI CTTGAG 2 cut(s) 660, 1020
Bsa29I ATCGAT 1 cut(s) 1020
BsaBI GATNNNNATC 2 cut(s) 586, 888
BsaI GGTCTC 2 cut(s) 350, 442
BsaJI CCNNGG 4 cut(s) 229, 779, 1147, 1530
BsaXI ACNNNNNCTCC 2 cut(s) 1511, 1541
Bsc4I CCNNNNNNNGG 2 cut(s) 1153, 1531
Bse1I ACTGG 4 cut(s) 136, 583, 1271, 1422
Bse3DI GCAATG 1 cut(s) 1143
Bse8I GATNNNNATC 2 cut(s) 586, 888
BseBI CCWGG 2 cut(s) 330, 1532
BseCI ATCGAT 1 cut(s) 1020
BseDI CCNNGG 4 cut(s) 229, 779, 1147, 1530
BseGI GGATG 5 cut(s) 176, 949, 1255, 1521, 1668
BseJI GATNNNNATC 2 cut(s) 586, 888
BseLI CCNNNNNNNGG 2 cut(s) 1153, 1531
BseMI GCAATG 1 cut(s) 1143
BseNI ACTGG 4 cut(s) 136, 583, 1271, 1422
BseXI GCAGC 4 cut(s) 300, 610, 1120, 1303
Bsh1236I CGCG 1 cut(s) 860
BshFI GGCC 2 cut(s) 69, 1484
BshVI ATCGAT 1 cut(s) 1020
BsiHKAI GWGCWC 1 cut(s) 602
BsiSI CCGG 1 cut(s) 1456
BslFI GGGAC 2 cut(s) 425, 511
BslI CCNNNNNNNGG 2 cut(s) 1153, 1531
BsmAI GTCTC 4 cut(s) 188, 350, 442, 1041
BsmFI GGGAC 2 cut(s) 425, 511
BsmI GAATGC 1 cut(s) 1614
BsnI GGCC 2 cut(s) 69, 1484
Bso31I GGTCTC 2 cut(s) 350, 442
Bsp119I TTCGAA 2 cut(s) 1070, 1561
Bsp1286I GDGCHC 1 cut(s) 602
Bsp1720I GCTNAGC 1 cut(s) 1125
BspACI CCGC 2 cut(s) 1160, 1642
BspANI GGCC 2 cut(s) 69, 1484
BspDI ATCGAT 1 cut(s) 1020
BspFNI CGCG 1 cut(s) 860
BspLI GGNNCC 4 cut(s) 466, 499, 1158, 1306
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 9 cut(s) 459, 472, 589, 595, 638, 884, 1233, 1325, 1510
BspT104I TTCGAA 2 cut(s) 1070, 1561
BspTI CTTAAG 1 cut(s) 967
BspTNI GGTCTC 2 cut(s) 350, 442
BsrDI GCAATG 1 cut(s) 1143
BsrI ACTGG 4 cut(s) 136, 583, 1271, 1422
BssECI CCNNGG 4 cut(s) 229, 779, 1147, 1530
BssNAI GTATAC 1 cut(s) 1555
BssSI CACGAG 1 cut(s) 1062
BssT1I CCWWGG 2 cut(s) 229, 779
Bst1107I GTATAC 1 cut(s) 1555
Bst2BI CACGAG 1 cut(s) 1062
Bst2UI CCWGG 2 cut(s) 330, 1532
Bst4CI ACNGT 4 cut(s) 226, 846, 1148, 1176
Bst6I CTCTTC 2 cut(s) 353, 785
BstAFI CTTAAG 1 cut(s) 967
BstBI TTCGAA 2 cut(s) 1070, 1561
BstC8I GCNNGC 5 cut(s) 455, 459, 707, 1131, 1272
BstDEI CTNAG 2 cut(s) 716, 1125
BstDSI CCRYGG 1 cut(s) 1147
BstF5I GGATG 5 cut(s) 176, 949, 1255, 1521, 1668
BstFNI CGCG 1 cut(s) 860
BstH2I RGCGCY 1 cut(s) 1685
BstHHI GCGC 2 cut(s) 862, 1684
BstMAI GTCTC 4 cut(s) 188, 350, 442, 1041
BstMWI GCNNNNNNNGC 5 cut(s) 1130, 1280, 1325, 1481, 1490
BstNI CCWGG 2 cut(s) 330, 1532
BstNSI RCATGY 2 cut(s) 824, 1274
BstSCI CCNGG 2 cut(s) 328, 1530
BstSFI CTRYAG 1 cut(s) 1677
BstUI CGCG 1 cut(s) 860
BstV1I GCAGC 4 cut(s) 300, 610, 1120, 1303
BstV2I GAAGAC 2 cut(s) 497, 802
BstX2I RGATCY 4 cut(s) 464, 581, 587, 971
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 4 cut(s) 464, 581, 587, 971
BstZ17I GTATAC 1 cut(s) 1555
Bsu15I ATCGAT 1 cut(s) 1020
BsuRI GGCC 2 cut(s) 69, 1484
BsuTUI ATCGAT 1 cut(s) 1020
BtgI CCRYGG 1 cut(s) 1147
BtsCI GGATG 5 cut(s) 176, 949, 1255, 1521, 1668
BtsI GCAGTG 2 cut(s) 684, 1542
BtsIMutI CAGTG 3 cut(s) 684, 1429, 1542
Cac8I GCNNGC 5 cut(s) 455, 459, 707, 1131, 1272
CfoI GCGC 2 cut(s) 862, 1684
Cfr13I GGNCC 3 cut(s) 326, 498, 1144
ClaI ATCGAT 1 cut(s) 1020
CsiI ACCWGGT 1 cut(s) 328
Csp6I GTAC 2 cut(s) 371, 1286
CviAII CATG 7 cut(s) 43, 213, 627, 634, 821, 1271, 1572
CviQI GTAC 2 cut(s) 371, 1286
DdeI CTNAG 2 cut(s) 716, 1125
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 2 cut(s) 353, 785
EarI CTCTTC 2 cut(s) 353, 785
Eco130I CCWWGG 2 cut(s) 229, 779
Eco31I GGTCTC 2 cut(s) 350, 442
Eco47I GGWCC 3 cut(s) 326, 498, 1144
Eco47III AGCGCT 1 cut(s) 1683
Eco57I CTGAAG 1 cut(s) 1608
EcoO109I RGGNCCY 2 cut(s) 326, 498
EcoRI GAATTC 1 cut(s) 1088
EcoRII CCWGG 2 cut(s) 328, 1530
EcoT14I CCWWGG 2 cut(s) 229, 779
ErhI CCWWGG 2 cut(s) 229, 779
FaeI CATG 7 cut(s) 46, 216, 630, 637, 824, 1274, 1575
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 425, 511
FatI CATG 7 cut(s) 42, 212, 626, 633, 820, 1270, 1571
FauNDI CATATG 2 cut(s) 199, 805
FbaI TGATCA 1 cut(s) 931
FblI GTMKAC 1 cut(s) 1554
Fnu4HI GCNGC 4 cut(s) 314, 624, 1134, 1317
FokI GGATG 5 cut(s) 163, 956, 1262, 1508, 1675
Fsp4HI GCNGC 4 cut(s) 314, 624, 1134, 1317
FspBI CTAG 3 cut(s) 47, 458, 509
GlaI GCGC 2 cut(s) 861, 1683
GluI GCNGC 4 cut(s) 314, 624, 1134, 1317
GsuI CTGGAG 2 cut(s) 612, 1405
HaeII RGCGCY 1 cut(s) 1685
HaeIII GGCC 2 cut(s) 69, 1484
HapII CCGG 1 cut(s) 1456
HhaI GCGC 2 cut(s) 862, 1684
Hin1II CATG 7 cut(s) 46, 216, 630, 637, 824, 1274, 1575
Hin6I GCGC 2 cut(s) 860, 1682
HinP1I GCGC 2 cut(s) 860, 1682
HincII GTYRAC 1 cut(s) 1351
HindII GTYRAC 1 cut(s) 1351
HinfI GANTC 5 cut(s) 307, 784, 835, 987, 1067
HpaII CCGG 1 cut(s) 1456
HphI GGTGA 1 cut(s) 899
Hpy166II GTNNAC 6 cut(s) 121, 722, 1351, 1437, 1555, 1711
Hpy188III TCNNGA 6 cut(s) 399, 585, 591, 922, 1064, 1718
Hpy8I GTNNAC 6 cut(s) 121, 722, 1351, 1437, 1555, 1711
HpyAV CCTTC 1 cut(s) 1660
HpyCH4III ACNGT 4 cut(s) 226, 846, 1148, 1176
HpyCH4IV ACGT 1 cut(s) 1005
HpyF10VI GCNNNNNNNGC 5 cut(s) 1130, 1280, 1325, 1481, 1490
HpyF3I CTNAG 2 cut(s) 716, 1125
HpySE526I ACGT 1 cut(s) 1005
Hsp92II CATG 7 cut(s) 46, 216, 630, 637, 824, 1274, 1575
HspAI GCGC 2 cut(s) 860, 1682
Ksp22I TGATCA 1 cut(s) 931
LmnI GCTCC 3 cut(s) 1162, 1424, 1575
Lsp1109I GCAGC 4 cut(s) 300, 610, 1120, 1303
LweI GCATC 6 cut(s) 185, 367, 404, 768, 1333, 1484
MabI ACCWGGT 1 cut(s) 328
MaeI CTAG 3 cut(s) 47, 458, 509
MaeII ACGT 1 cut(s) 1005
MaeIII GTNAC 5 cut(s) 92, 260, 521, 1507, 1517
MflI RGATCY 4 cut(s) 464, 581, 587, 971
MhlI GDGCHC 1 cut(s) 602
MlsI TGGCCA 1 cut(s) 69
MluNI TGGCCA 1 cut(s) 69
MmeI TCCRAC 2 cut(s) 424, 691
MnlI CCTC 6 cut(s) 254, 366, 684, 1240, 1285, 1535
Mox20I TGGCCA 1 cut(s) 69
MroXI GAANNNNTTC 1 cut(s) 917
MscI TGGCCA 1 cut(s) 69
MseI TTAA 6 cut(s) 51, 158, 575, 968, 1116, 1254
MslI CAYNNNNRTG 2 cut(s) 819, 1619
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 967
MspI CCGG 1 cut(s) 1456
MspR9I CCNGG 2 cut(s) 330, 1532
Mva1269I GAATGC 1 cut(s) 1614
MvaI CCWGG 2 cut(s) 330, 1532
MvnI CGCG 1 cut(s) 860
MwoI GCNNNNNNNGC 5 cut(s) 1130, 1280, 1325, 1481, 1490
NdeI CATATG 2 cut(s) 199, 805
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 7 cut(s) 46, 216, 630, 637, 824, 1274, 1575
NlaIV GGNNCC 4 cut(s) 466, 499, 1158, 1306
NmuCI GTSAC 2 cut(s) 92, 521
NspI RCATGY 2 cut(s) 824, 1274
NspV TTCGAA 2 cut(s) 1070, 1561
PaeI GCATGC 1 cut(s) 1274
PctI GAATGC 1 cut(s) 1614
PdmI GAANNNNTTC 1 cut(s) 917
PfeI GAWTC 5 cut(s) 307, 784, 835, 987, 1067
PkrI GCNGC 4 cut(s) 315, 625, 1135, 1318
PpuMI RGGWCCY 2 cut(s) 326, 498
PsiI TTATAA 1 cut(s) 1604
Psp5II RGGWCCY 2 cut(s) 326, 498
Psp6I CCWGG 2 cut(s) 328, 1530
PspGI CCWGG 2 cut(s) 328, 1530
PspN4I GGNNCC 4 cut(s) 466, 499, 1158, 1306
PspPI GGNCC 3 cut(s) 326, 498, 1144
PspPPI RGGWCCY 2 cut(s) 326, 498
PsuI RGATCY 4 cut(s) 464, 581, 587, 971
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 372, 1287
RsaNI GTAC 2 cut(s) 371, 1286
RseI CAYNNNNRTG 2 cut(s) 819, 1619
SaqAI TTAA 6 cut(s) 51, 158, 575, 968, 1116, 1254
SatI GCNGC 4 cut(s) 314, 624, 1134, 1317
Sau96I GGNCC 3 cut(s) 326, 498, 1144
ScaI AGTACT 1 cut(s) 1287
ScrFI CCNGG 2 cut(s) 330, 1532
SduI GDGCHC 1 cut(s) 602
SexAI ACCWGGT 1 cut(s) 328
SfaNI GCATC 6 cut(s) 185, 367, 404, 768, 1333, 1484
SfcI CTRYAG 1 cut(s) 1677
SfuI TTCGAA 2 cut(s) 1070, 1561
SinI GGWCC 3 cut(s) 326, 498, 1144
SmiMI CAYNNNNRTG 2 cut(s) 819, 1619
SmlI CTYRAG 3 cut(s) 675, 967, 1035
SmoI CTYRAG 3 cut(s) 675, 967, 1035
SphI GCATGC 1 cut(s) 1274
SsiI CCGC 2 cut(s) 1160, 1642
SspMI CTAG 3 cut(s) 47, 458, 509
StyD4I CCNGG 2 cut(s) 328, 1530
StyI CCWWGG 2 cut(s) 229, 779
TaaI ACNGT 4 cut(s) 226, 846, 1148, 1176
TaiI ACGT 1 cut(s) 1008
TaqI TCGA 3 cut(s) 1020, 1070, 1561
TatI WGTACW 1 cut(s) 1285
TfiI GAWTC 5 cut(s) 307, 784, 835, 987, 1067
Tru1I TTAA 6 cut(s) 51, 158, 575, 968, 1116, 1254
Tru9I TTAA 6 cut(s) 51, 158, 575, 968, 1116, 1254
TscAI CASTG 3 cut(s) 691, 1429, 1542
TseFI GTSAC 2 cut(s) 92, 521
TseI GCWGC 4 cut(s) 313, 623, 1133, 1316
Tsp45I GTSAC 2 cut(s) 92, 521
TspDTI ATGAA 4 cut(s) 564, 1038, 1101, 1184
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 3 cut(s) 691, 1429, 1542
Vha464I CTTAAG 1 cut(s) 967
VpaK11BI GGWCC 3 cut(s) 326, 498, 1144
XapI RAATTY 4 cut(s) 318, 532, 1088, 1101
XceI RCATGY 2 cut(s) 824, 1274
XmiI GTMKAC 1 cut(s) 1554
XmnI GAANNNNTTC 1 cut(s) 917
XspI CTAG 3 cut(s) 47, 458, 509
ZrmI AGTACT 1 cut(s) 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.