Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018095

Physical Location & Seq

Genomic Coordinates Forward (+)

64062261 .. 64062782

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTACTTGAATTTTGTAAATAAGATCAAACAAAATGATACTATTGTATGCTCTTTTTTTGGAAGGTCACTAGGGCAAGCAGCGCCTGACATCTCTGCATTCATACGAGCCAAGGCAGCTGCGTATCCCATATTTGAGATGATAGAGAGGAACACAGTGAACCAATCCAGTAGCAAAACTGGCCGGAAACTGGACAAACTTGAGGGGCATATCCAATTCAAGGATGTATCTTTTAGCTACCCATCTCGTATAGATGTTAGTATCTTCAATAAGCTCAATCTTGATATCCCTGCTGGGAAGATTGTAGCCCTTGTGGGAGGAAGTGGTTCTGGCAAGAGTATAGTTATATCTTTGATTGAACGATTCTATGAGCCACTTGCTGGCCAGGTGTTGTTAGATGGAAATAATATAAGCGAACTTGACCTCAAATGGGTGAGGCAACAAATTGGGCTGGTCAATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

154

Amino Acids

17.02

Weight (kDa)

9.27

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	90 - 154	1.1e-14	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0018095)

Species	Orthologous Gene IDs
malus_domestica	MD13G1138900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146391 RchiOBHm_Chr4g0410931 RchiOBHm_Chr5g0019431 RchiOBHm_Chr5g0083761
rosa_multiflora	Rmu_sc0019984.1_g000001 Rmu_sc0021736.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015500 Rroxscaffold_1G00064440
rosa_samantha	Rh4AG163600 Rh4CG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	380
AcoI	YGGCCR	2 cut(s)	181, 382
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	4 cut(s)	190, 220, 380, 430
AgsI	TTSAA	4 cut(s)	10, 220, 268, 359
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	3 cut(s)	119, 237, 274
AluI	AGCT	3 cut(s)	119, 237, 274
AlwNI	CAGNNNCTG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	181, 382
ApeKI	GCWGC	3 cut(s)	80, 116, 119
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	445
BaeI	ACNNNNGTAYC	2 cut(s)	30, 63
BalI	TGGCCA	1 cut(s)	384
BbvI	GCAGC	3 cut(s)	92, 106, 128
BccI	CCATC	2 cut(s)	250, 392
BciT130I	CCWGG	1 cut(s)	386
BciVI	GTATCC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	71
BfoI	RGCGCY	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	3 cut(s)	81, 117, 120
BlsI	GCNGC	3 cut(s)	82, 118, 121
Bme1390I	CCNGG	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 220, 380, 430
Bse1I	ACTGG	3 cut(s)	168, 184, 195
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	4 cut(s)	190, 220, 380, 430
BseNI	ACTGG	3 cut(s)	168, 184, 195
BseXI	GCAGC	3 cut(s)	92, 106, 128
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	2 cut(s)	183, 384
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	4 cut(s)	190, 220, 380, 430
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	183, 384
Bsp143I	GATC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	183, 384
BsrI	ACTGG	3 cut(s)	168, 184, 195
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	78, 382
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 116, 180
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstV1I	GCAGC	3 cut(s)	92, 106, 128
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	183, 384
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	78, 382
CaiI	CAGNNNCTG	1 cut(s)	86
CfoI	GCGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	9 cut(s)	110, 119, 183, 237, 274, 308, 373, 384, 451
CviKI_1	RGCY	9 cut(s)	110, 119, 183, 237, 274, 308, 373, 384, 451
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	2 cut(s)	181, 382
Eco130I	CCWWGG	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	384
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaiI	YATR	9 cut(s)	49, 104, 131, 210, 251, 341, 347, 369, 410
Fnu4HI	GCNGC	3 cut(s)	81, 117, 120
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	3 cut(s)	81, 117, 120
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	3 cut(s)	81, 117, 120
GsaI	CCCAGC	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	2 cut(s)	183, 384
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	1 cut(s)	85
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	57
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 116, 180
HspAI	GCGC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	24
Lsp1109I	GCAGC	3 cut(s)	92, 106, 128
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	256, 310
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	3 cut(s)	10, 215, 444
MluNI	TGGCCA	1 cut(s)	384
MnlI	CCTC	5 cut(s)	141, 196, 311, 429, 434
Mox20I	TGGCCA	1 cut(s)	384
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	3 cut(s)	82, 116, 180
NdeII	GATC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	66
PctI	GAATGC	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	363
PflMI	CCANNNNNTGG	1 cut(s)	380
PkrI	GCNGC	3 cut(s)	82, 118, 121
Psp6I	CCWGG	1 cut(s)	384
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SatI	GCNGC	3 cut(s)	81, 117, 120
Sau3AI	GATC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	6 cut(s)	68, 121, 239, 276, 390, 426
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	3 cut(s)	10, 215, 444
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	157
TasI	AATT	3 cut(s)	10, 215, 444
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	363
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	3 cut(s)	80, 116, 119
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	380
XapI	RAATTY	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.