Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017743

Physical Location & Seq

Genomic Coordinates Forward (+)

80514330 .. 80514676

Gene Structure 347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTGGTGGGCTCTAAATGTGGTGTTCAATATTTACAATAAGAAGGTGTTGAATGTGTACTTGTTCCCTTGGTTGAACTCCACTCTGTCTTTGGCATATGGGTCTTTGATCATGTTGGTGTCTTGTGCTACCAAGATTGTTAAGGCGCCCAAGACTGATATGAATTTTTGGAAGGCTCTTTTTCCTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005315 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006996 GO:0007033 GO:0007275 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0009536 GO:0009553 GO:0009555 GO:0009605 GO:0009607 GO:0009624 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010152 GO:0010154 GO:0015075 GO:0015120 GO:0015144 GO:0015152 GO:0015291 GO:0015318 GO:0015605 GO:0015711 GO:0015712 GO:0015713 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015760 GO:0015849 GO:0016043 GO:0019904 GO:0021700 GO:0022414 GO:0022804 GO:0022857 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0034389 GO:0035436 GO:0042873 GO:0042879 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0061458 GO:0071702 GO:0071840 GO:0071917 GO:0098656 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

64

Amino Acids

7.48

Weight (kDa)

9.52

Isoelectric Point (pI)

22.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	1 - 62	2e-14	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017743)

Species	Orthologous Gene IDs
malus_domestica	MD11G1223700.v1.1
prunus_persica	Prupe.4G207800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0165631 RchiOBHm_Chr4g0433031 RchiOBHm_Chr5g0036681
rosa_multiflora	Rmu_sc0001441.1_g000002 Rmu_sc0003559.1_g000025 Rmu_sc0005571.1_g000020 Rmu_sc0011299.1_g000006
rosa_roxburghii	Rroxscaffold_3G00218300
rosa_rugosa	Rorug05G0168900
rosa_samantha	Rh5DG269700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AcsI	RAATTY	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	28, 52, 76
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	13
BclI	TGATCA	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	68
BshNI	GGYRCC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	1 cut(s)	108
BssNI	GRCGYC	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	68
BstACI	GRCGYC	1 cut(s)	146
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
CfoI	GCGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	2 cut(s)	11, 176
CviKI_1	RGCY	2 cut(s)	11, 176
CviQI	GTAC	1 cut(s)	58
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	115
FaiI	YATR	4 cut(s)	97, 99, 113, 161
FatI	CATG	1 cut(s)	111
FauNDI	CATATG	1 cut(s)	97
FbaI	TGATCA	1 cut(s)	108
FriOI	GRGCYC	1 cut(s)	13
GlaI	GCGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	149
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	37, 166
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	146
KasI	GGCGCC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	108
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	163
Mly113I	GGCGCC	1 cut(s)	146
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	116
NarI	GGCGCC	1 cut(s)	146
NdeI	CATATG	1 cut(s)	97
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	147
PluTI	GGCGCC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	147
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	147
SgeI	CNNG	6 cut(s)	73, 81, 124, 135, 145, 163
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	163
SspDI	GGCGCC	1 cut(s)	145
SspI	AATATT	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	68
TasI	AATT	1 cut(s)	163
TatI	WGTACW	1 cut(s)	57
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	176
XapI	RAATTY	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.