RchiOBHm_Chr2g0166451

May serve as docking site to facilitate the association of other proteins to the plasma membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005273
Physical Location & Seq
Forward (+)
81103329 .. 81106597
3269 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGCTGGAGTGCAAGACCAATTGGAAATCAAGTTTCGGTTGAGTGATGGATCAGATATTGGCCCCAAAAGCTTTCCTGCTGCTACAAGTGTTTCGACCTTGAAAGAAAGTATTCTTGCGCAATGGCCTAAAGACAAGGAGAATGGTCCAAGGACTGTTAAAGATGTCAAGCTGATAAGTGCAGGAAAGATATTGGAGAACAACAGAACAGTTGGGGAGTGCCGAAGCCCAATATGCGATGTTCCTACAACTATGCATGTCGTTGTTCAACCACCTTCTTCGGAGAAAGAAAAGAAAATGACAAGTGAACCGAAGCAGAACAAATGCGTCTGTGTTATATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

114

Amino Acids

12.47

Weight (kDa)

8.72

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 6 - 112 1.2e-43 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 343
Acc16I TGCGCA 1 cut(s) 120
AclWI GGATC 1 cut(s) 58
AgsI TTSAA 2 cut(s) 103, 269
AluBI AGCT 2 cut(s) 72, 172
AluI AGCT 2 cut(s) 72, 172
AlwI GGATC 1 cut(s) 58
AoxI GGCC 2 cut(s) 61, 125
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 2 cut(s) 62, 146
AvaII GGWCC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 41
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 62, 146
BmiI GGNNCC 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 2 cut(s) 63, 127
BsnI GGCC 2 cut(s) 63, 127
Bsp143I GATC 1 cut(s) 50
BspANI GGCC 2 cut(s) 63, 127
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 157, 211
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 1 cut(s) 53
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 69, 234
BstNSI RCATGY 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 63, 127
BtgZI GCGATG 1 cut(s) 252
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 62, 146
CseI GACGC 1 cut(s) 316
CviAII CATG 1 cut(s) 257
CviJI RGCY 6 cut(s) 5, 63, 72, 127, 172, 228
CviKI_1 RGCY 6 cut(s) 5, 63, 72, 127, 172, 228
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 149
FaeI CATG 1 cut(s) 260
FaiI YATR 5 cut(s) 235, 254, 258, 338, 343
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspI TGCGCA 1 cut(s) 120
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 63, 127
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 121
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 2 cut(s) 55, 283
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 285
HpyCH4III ACNGT 2 cut(s) 157, 211
HpyCH4V TGCA 3 cut(s) 13, 182, 256
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 234
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 1 cut(s) 50
LpnPI CCDG 2 cut(s) 90, 168
Lsp1109I GCAGC 1 cut(s) 67
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 1 cut(s) 270
MfeI CAATTG 1 cut(s) 20
MluCI AATT 1 cut(s) 20
Mph1103I ATGCAT 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 1 cut(s) 159
MunI CAATTG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 69, 234
NdeII GATC 1 cut(s) 50
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 64
NsbI TGCGCA 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 258
NspI RCATGY 1 cut(s) 260
PdmI GAANNNNTTC 1 cut(s) 111
PkrI GCNGC 1 cut(s) 82
PsiI TTATAA 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 62, 146
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 50
Sau96I GGNCC 2 cut(s) 62, 146
SetI ASST 4 cut(s) 74, 101, 174, 277
SinI GGWCC 1 cut(s) 146
Sse9I AATT 1 cut(s) 20
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 157, 211
TaqI TCGA 1 cut(s) 95
TasI AATT 1 cut(s) 20
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 146
XceI RCATGY 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 111
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.