RchiOBHm_Chr1g0313051

Belongs to the CDP-alcohol phosphatidyltransferase class-I family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
137344 .. 138163
820 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 534 bp
ATGTGTCTCTATATTATTGGCTATAAAATAGGGCTCATACTTTTATATTGTAGACCTCCCCACACCAAATCATTCTCTCTAATATTAATTCCTAACCCTACTCTCTCTCTCTCCTCTCTTCTCTTTTCTGTCAGCCGCATAACTCCATTTCTCTCTTCTTCTTCCTTTTGGTTACCAGAACTCCATTTCTCTCTCTTCTTGAAACTTCTCATCTTTGAAATCCAGAACCTTCCTCAAGGCCACCATCTCACCGATCTCATCGCCCCGTCTTCACTCGTCCCCTACCTTTCGCTTTGGCCCGCTCAGATTTTCAGAACCTCTTTCTCTCTCCAACTAGATCATCCCCTTCCATGGATCCCACGATCCGCTCTTCCTCTCCTGCCCGCCGTGGAAGCGCAGTCCGCTACTCCGCTCTACCTCCGTGGAAAAGTCGGGTTGAAGGATGTCAGTGATGGTTTCGTCAATTTGCGTAATTTGATCTCCATGACTCGGCTGATTTCTGGTCCTTTGCTTGGATCAATTAATATAAATTGA

Protein Analysis

177

Amino Acids

19.76

Weight (kDa)

9.51

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018291)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G14104
fragaria_vesca FvH4_3g23710
malus_domestica MD05G1343100.v1.1
pyrus_communis pycom04g13220 pycom05g25750
rosa_chinensis RchiOBHm_Chr1g0313051
rosa_roxburghii Rroxscaffold_1G00013670
rosa_rugosa Rorug05G0384700
rosa_samantha Rh2CG490700 Rh6DG101600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 302, 368, 412
AccI GTMKAC 1 cut(s) 52
AciI CCGC 6 cut(s) 136, 300, 366, 384, 402, 410
AclWI GGATC 4 cut(s) 349, 357, 362, 523
AfiI CCNNNNNNNGG 3 cut(s) 351, 489, 512
AgsI TTSAA 3 cut(s) 202, 218, 439
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 4 cut(s) 349, 357, 362, 523
AoxI GGCC 2 cut(s) 238, 296
AseI ATTAAT 2 cut(s) 86, 522
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 2 cut(s) 297, 503
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 503
BamHI GGATCC 1 cut(s) 354
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 261
BccI CCATC 2 cut(s) 252, 446
BceAI ACGGC 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 1 cut(s) 335
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 2 cut(s) 297, 503
BmiI GGNNCC 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 350, 387, 421
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 489, 512
BseDI CCNNGG 3 cut(s) 350, 387, 421
BseGI GGATG 2 cut(s) 340, 448
BseLI CCNNNNNNNGG 3 cut(s) 351, 489, 512
BseMII CTCAG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 103
BshFI GGCC 2 cut(s) 240, 298
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 3 cut(s) 351, 489, 512
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 240, 298
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 6 cut(s) 253, 337, 354, 362, 477, 515
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 6 cut(s) 136, 300, 366, 384, 402, 410
BspANI GGCC 2 cut(s) 240, 298
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 356
BspPI GGATC 4 cut(s) 349, 357, 362, 523
BspQI GCTCTTC 1 cut(s) 375
BsrBI CCGCTC 3 cut(s) 302, 368, 412
BssECI CCNNGG 3 cut(s) 350, 387, 421
BssMI GATC 6 cut(s) 253, 337, 354, 362, 477, 515
BssT1I CCWWGG 1 cut(s) 350
Bst6I CTCTTC 4 cut(s) 123, 160, 200, 375
BstC8I GCNNGC 2 cut(s) 300, 384
BstDEI CTNAG 1 cut(s) 303
BstDSI CCRYGG 3 cut(s) 350, 387, 421
BstEII GGTNACC 1 cut(s) 171
BstF5I GGATG 2 cut(s) 340, 448
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 6 cut(s) 256, 340, 357, 365, 480, 518
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 6 cut(s) 253, 337, 354, 362, 477, 515
BstMWI GCNNNNNNNGC 2 cut(s) 392, 401
BstPI GGTNACC 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BsuRI GGCC 2 cut(s) 240, 298
BtgI CCRYGG 3 cut(s) 350, 387, 421
BtgZI GCGATG 1 cut(s) 244
BtsCI GGATG 2 cut(s) 340, 448
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 300, 384
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 297, 503
CviAII CATG 2 cut(s) 351, 484
CviJI RGCY 6 cut(s) 21, 34, 135, 240, 298, 493
CviKI_1 RGCY 6 cut(s) 21, 34, 135, 240, 298, 493
DdeI CTNAG 1 cut(s) 303
DpnI GATC 6 cut(s) 255, 339, 356, 364, 479, 517
DpnII GATC 6 cut(s) 253, 337, 354, 362, 477, 515
Eam1104I CTCTTC 4 cut(s) 123, 160, 200, 375
EarI CTCTTC 4 cut(s) 123, 160, 200, 375
Eco130I CCWWGG 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 503
Eco91I GGTNACC 1 cut(s) 171
EcoO65I GGTNACC 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 2 cut(s) 354, 487
FaiI YATR 8 cut(s) 12, 24, 38, 46, 140, 352, 485, 527
FaqI GGGAC 1 cut(s) 263
FatI CATG 2 cut(s) 350, 483
FauI CCCGC 2 cut(s) 307, 391
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 2 cut(s) 327, 455
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 396
GluI GCNGC 1 cut(s) 136
HaeIII GGCC 2 cut(s) 240, 298
HhaI GCGC 1 cut(s) 397
Hin1II CATG 2 cut(s) 354, 487
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HinfI GANTC 1 cut(s) 487
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 306, 314
Hpy188III TCNNGA 2 cut(s) 199, 223
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 239, 356, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 401
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 2 cut(s) 354, 487
HspAI GCGC 1 cut(s) 395
Kzo9I GATC 6 cut(s) 253, 337, 354, 362, 477, 515
LguI GCTCTTC 1 cut(s) 375
LpnPI CCDG 4 cut(s) 189, 236, 392, 486
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 1 cut(s) 171
MalI GATC 6 cut(s) 255, 339, 356, 364, 479, 517
MbiI CCGCTC 3 cut(s) 302, 368, 412
MboI GATC 6 cut(s) 253, 337, 354, 362, 477, 515
MboII GAAGA 7 cut(s) 110, 147, 150, 153, 187, 261, 362
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 5 cut(s) 87, 463, 472, 519, 529
MlyI GAGTC 1 cut(s) 481
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 6 cut(s) 66, 124, 243, 328, 384, 428
MseI TTAA 2 cut(s) 86, 522
MwoI GCNNNNNNNGC 2 cut(s) 392, 401
NcoI CCATGG 1 cut(s) 350
NdeII GATC 6 cut(s) 253, 337, 354, 362, 477, 515
NlaIII CATG 2 cut(s) 354, 487
NlaIV GGNNCC 1 cut(s) 356
NmeAIII GCCGAG 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 375
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PshBI ATTAAT 2 cut(s) 86, 522
PspEI GGTNACC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 356
PspPI GGNCC 2 cut(s) 297, 503
PsuI RGATCY 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 2 cut(s) 86, 522
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 6 cut(s) 253, 337, 354, 362, 477, 515
Sau96I GGNCC 2 cut(s) 297, 503
SchI GAGTC 1 cut(s) 481
SduI GDGCHC 1 cut(s) 36
SetI ASST 5 cut(s) 58, 231, 288, 320, 420
SinI GGWCC 1 cut(s) 503
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 5 cut(s) 87, 463, 472, 519, 529
SsiI CCGC 6 cut(s) 136, 300, 366, 384, 402, 410
SspI AATATT 1 cut(s) 84
SspMI CTAG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 350
TasI AATT 5 cut(s) 87, 463, 472, 519, 529
TauI GCSGC 1 cut(s) 138
Tru1I TTAA 2 cut(s) 86, 522
Tru9I TTAA 2 cut(s) 86, 522
TscAI CASTG 1 cut(s) 454
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 503
VspI ATTAAT 2 cut(s) 86, 522
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.