Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007572

Physical Location & Seq

Genomic Coordinates Reverse (-)

3345369 .. 3352627

Gene Structure 7259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3252 bp

ATGGAGTCGGAAGGAGAAACTGAGGCAAAGCCGATGAAGAACTTGGGTGGTCAGGTCTGCCAGATCTGTGGGGATAATGTTGGGAAGACAGCTGCTGGTGAACCATTCATTGCCTGCGACGTCTGTTCTTTTCCTGTTTGCAGGCCATGCTATGAGTATGAGAGGAAGGATGGAAATCAGTCTTGCCCTCAATGCAAAACCAGATACAAGAGGCACAAAGGAAGTCCTGCAATTCTTGGTGATAGAGAAGAGGATGCTGATGCTGATGACGGTGCTAGTGATTTCAACTATACTTCAGAAAATCAAAACGAGAAACAAAAGATTGCCGAGCGCATGTTGAGCTGGCATATGACATATGGGCGAGGAGAGGATATGGGGGGTCCAAACTATGATAAAGAGGTTTCTCACAATCACATCCCTCTGCTCACTAATGGAACAGAGGTTTCCGGAGAACTGTCTGCTGCCTCACCAGGGCGCCTTTCCATGGCATCTCCTGGAGCTTCTATTGGTGGAAAGCGTGTCCATCCTCTTCCTTATGCATCGGATGTTAATCAATCACCTAATTTAAGGGTTGTGGATCCTGTGAGAGAGTTTGGTTCTCCGGGGATAGGTAATGTAGCATGGAAAGAGAGAGTGGATGGCTGGAAGATGAAGCAGGAGAAGAATACTATTCCAATGAGCACTGGTCAAGCTACTTCAGAAAGAGGGGGTGGAGATATTGATGCCAGCACTGATGTGATTGTGGATGACTCTTTGTTGAATGATGAAGCGAGGCAACCTCTCTCTAGAAAGGTCTCTATTCCATCGTCTAGGATAAATCCTTACAGGATGGTCATTGTACTGCGGCTGGTTATTCTCTGTATTTTCTTGCACTATCGGTTAACAAATCCTGTGCGCAATGCCTACGCTCTGTGGTTGATATCAGTCATTTGTGAGATTTGGTTCGCAATATCTTGGATTCTCGATCAGTTCCCTAAGTGGCTGCCTGTAAATCGTGAAACATATCTCGACAGACTTTCTCTGAGATATGACCGAGAAGGAGAACCATCACAGTTAGCTGCTGTTGACATCTTCGTCAGTACTGTGGATCCACTGAAGGAGCCTCCTATGGTGACAGCAAATACTGTGCTATCTATTCTTGCAGTTGACTATCCAGTTGACAAGGTTTCTTGCTATGTTTCTGATGATGGAGCTGCAATGTTGACATTTGAAGCTCTCTCTGAAACTTCAGAATTTGCAAGGAAATGGGTCCCTTTCTGCAAGAAGTATGCCATAGAGCCTAGGGCTCCTGAATGGTACTTTTCACAGAAAATTGATTATTTGAAGGATAAAGTTCAACCATCATTTGTCAAAGACCGCAGAGCAATGAAGAGAGAATACGAAGAATTTAAAGTTCGTGTGAATGGGCTTGTTGCAAAGGCGACAAAAGTACCTGAAGAAGGATGGATCATGCAAGACGGTACTCCATGGCCTGGAAATAATACTAGAGACCATCCAGGAATGATCCAGGTTTTCTTGGGGCAAAGTGGAGGGCTTGATGCTGAGGGTAATGAGCTGCCACGTTTAGTGTATGTTTCTCGTGAAAAGCGTCCGGGTTTCCAACATCACAAGAAGGCTGGTGCTATGAATGCACTTGTTCGAGTATCTGCAGTCCTCACGAATGGACCTTTCTTGTTGAATCTTGATTGTGATCACTACATTAACAATAGTAAGGCCTTGAGGGAAGCAATGTGCTTCCTAATGGATCCTAACCTTGGAAAAAACGTGTGCTATGTTCAGTTTCCACAGAGATTTGATGGCATTGATAGAAATGATCGTTATGCCAATCGAAATACTGTTTTCTTTGATATTAACTTGAGAGGTTTAGATGGTATCCAAGGCCCAGTTTATGTGGGTACCGGATGTGTTTTCAATAGAACAGCCTTGTATGGTTATGAACCTCCTCTCAAGGTTAAGAATAAGAAAGCTGGAGTTCTTTCTTCACTTTGTGGTGGATCACGAAAGAAGGGTTCACAATCCAGTAAAAAAGGCTCAGACAAGAAGAAATCAAGTAAGCATGTGGATCCTACTGTGCCGATTTTCAGTCTAGAGGATATTGAAGAGGGGGTTGAAGGTACTGGATTTGATGATGAGAAGTCATTATTGATGTCACAAATGAGCCTGGAGAAAAGATTTGGTCAGTCTGCTGTTTTTGTTGCGTCGACACTTATGGAGAATGGTGGTGTTCCTCAATCTGCGACACCCGAAACTCTTCTTAAAGAAGCTATTCATGTTATTAGCTGTGGGTATGAAGACAAAAGTGACTGGGGACAAGAGATTGGATGGATTTATGGTTCTGTCACAGAGGATATTCTTACAGGATTCAAGATGCATGCCCGCGGGTGGAGGTCTATTTACTGCATGCCTAAGCGCCCAGCCTTTAAAGGGTCTGCTCCCATTAATCTTTCAGATCGTCTCAACCAAGTGCTTCGATGGGCATTGGGTTCTGTGGAAATTCTTCTTAGTCGGCATTGTCCTATCTGGTATGGCTATAGTGGTAGGCTAAAATGGCTGGAGAGATTTGCATATGTGAACACTACCATTTACCCAATTACTGCCATACCTCTTCTTGCGTACTGTACATTGCCGGCTGTCTGTCTTCTTACCAACAAATTCATCATTCCACAGATTAGCAACATTGCAAGTATATGGTTCATCTCGCTCTTTCTTTCCATCTTTGCAACTGGTATTCTAGAGATGAGATGGAGTGGTGTTGGAATTGACGAGTGGTGGAGAAATGAACAGTTTTGGGTTATCGGTGGTGTTTCAGCCCATCTTTTTGCTGTTGTTCAGGGTCTCCTGAAAGTACTTGCAGGTATTGACACCAACTTCACTGTCACCTCCAAGGCATCAGATGAAGACGGAGACTTTGCTGAACTCTACATGTTTAAATGGACAACCCTTCTCATCCCCCCAACAACTCTTCTTATCATAAACTTGGTGGGGGTGGTTGCCGGTATATCTTATGCTGTCAACAGTGGTTACCAGTCATGGGGTCCCCTCTTTGGTAAGCTCTTCTTTGCCTTTTGGGTGATTGTCCATTTGTATCCCTTCCTCAAAGGTCTTATGGGACGTCAGAACCGTACGCCTACAATTGTTGTTGTGTGGTCAATTCTCCTGGCTTCAATTTTCTCTTTGTTGTGGGTGAGGGTTGATCCATTTACCACAAGAGTCACCGGTCCAGATGTTGAGGTGTGTGGAATAAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009506 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030054 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0055044 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1083

Amino Acids

120.94

Weight (kDa)

6.96

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	10 - 86	3.4e-40	Zinc-binding RING-finger
Cellulose_synt	PF03552	355 - 1077	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	771 - 877	2.6e-07	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05170
fragaria_vesca	FvH4_7g01100 FvH4_7g01100 FvH4_7g01100 FvH4_7g01100 FvH4_7g01100
malus_domestica	MD02G1311600.v1.1 MD07G1011100.v1.1
prunus_persica	Prupe.2G011200_v2.0.a1 Prupe.2G014300_v2.0.a1 Prupe.2G014300_v2.0.a1
pyrus_communis	pycom02g26140 pycom02g26150 pycom07g00920
rosa_chinensis	RchiOBHm_Chr1g0316091
rosa_laevigata	RLG00000030696
rosa_multiflora	Rmu_sc0002531.1_g000033
rosa_roxburghii	Rroxscaffold_4G00331140
rosa_rugosa	Rorug01G0008900
rosa_samantha	Rh1AG019000 Rh1BG013900 Rh1CG016600 Rh1DG013600
rosa_wichuraiana	Rw1G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1073
AatII	GACGTC	2 cut(s)	123, 3115
Acc16I	TGCGCA	1 cut(s)	896
Acc36I	ACCTGC	1 cut(s)	2843
Acc65I	GGTACC	1 cut(s)	1895
AccB1I	GGYRCC	2 cut(s)	474, 1895
AccB7I	CCANNNNNTGG	1 cut(s)	1472
AccI	GTMKAC	1 cut(s)	2201
AccII	CGCG	1 cut(s)	2379
AccIII	TCCGGA	1 cut(s)	446
AciI	CCGC	4 cut(s)	844, 1357, 2377, 2379
AcsI	RAATTY	4 cut(s)	1232, 1385, 2493, 2651
AcuI	CTGAAG	5 cut(s)	279, 681, 1115, 1212, 1455
AcyI	GRCGYC	3 cut(s)	120, 475, 3112
AdeI	CACNNNGTG	1 cut(s)	1988
AflIII	ACRYGT	2 cut(s)	1764, 2922
AgeI	ACCGGT	1 cut(s)	3215
AjnI	CCWGG	7 cut(s)	469, 493, 1471, 1495, 1506, 2160, 3156
AleI	CACNNNNGTG	1 cut(s)	734
AloI	GAACNNNNNNTCC	2 cut(s)	2317, 2349
Alw21I	GWGCWC	1 cut(s)	683
Alw26I	GTCTC	5 cut(s)	799, 1482, 2459, 2840, 2898
AlwNI	CAGNNNCTG	1 cut(s)	95
Aor13HI	TCCGGA	1 cut(s)	446
AoxI	GGCC	4 cut(s)	143, 1469, 1713, 1879
ApeKI	GCWGC	6 cut(s)	92, 461, 982, 1058, 1193, 1555
ApoI	RAATTY	4 cut(s)	1232, 1385, 2493, 2651
ArsI	GACNNNNNNTTYG	2 cut(s)	2891, 2923
AseI	ATTAAT	1 cut(s)	2439
AsiGI	ACCGGT	1 cut(s)	3215
Asp700I	GAANNNNTTC	3 cut(s)	2250, 2265, 2496
Asp718I	GGTACC	1 cut(s)	1895
AspA2I	CCTAGG	1 cut(s)	1280
AspLEI	GCGC	4 cut(s)	333, 477, 897, 2412
AspS9I	GGNCC	6 cut(s)	380, 1249, 1664, 1880, 3035, 3218
AsuC2I	CCSGG	2 cut(s)	603, 1593
AsuHPI	GGTGA	9 cut(s)	110, 251, 459, 549, 1123, 2869, 3082, 3196, 3205
AvaII	GGWCC	5 cut(s)	380, 1249, 1664, 3035, 3218
AvrII	CCTAGG	1 cut(s)	1280
BaeI	ACNNNNGTAYC	2 cut(s)	1413, 1446
BamHI	GGATCC	4 cut(s)	577, 1087, 1744, 2062
BanI	GGYRCC	2 cut(s)	474, 1895
BanII	GRGCYC	1 cut(s)	1288
BarI	GAAGNNNNNNTAC	2 cut(s)	1361, 1393
BauI	CACGAG	1 cut(s)	1578
BbsI	GAAGAC	4 cut(s)	92, 2298, 2630, 2904
Bbv12I	GWGCWC	1 cut(s)	683
BbvCI	CCTCAGC	1 cut(s)	1542
BbvI	GCAGC	6 cut(s)	79, 448, 969, 1045, 1180, 1542
BciT130I	CCWGG	7 cut(s)	471, 495, 1473, 1497, 1508, 2162, 3158
BciVI	GTATCC	2 cut(s)	1883, 3096
BclI	TGATCA	1 cut(s)	1690
BcnI	CCSGG	2 cut(s)	603, 1593
BcoDI	GTCTC	5 cut(s)	799, 1482, 2459, 2840, 2898
BfaI	CTAG	8 cut(s)	276, 786, 810, 1281, 1485, 2087, 2732, 3250
BfmI	CTRYAG	2 cut(s)	1647, 2530
BfoI	RGCGCY	2 cut(s)	478, 2413
BfuAI	ACCTGC	1 cut(s)	2843
BfuI	GTATCC	2 cut(s)	1883, 3096
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	7 cut(s)	93, 462, 845, 983, 1059, 1194, 1556
BlnI	CCTAGG	1 cut(s)	1280
BlsI	GCNGC	7 cut(s)	94, 463, 846, 984, 1060, 1195, 1557
BmcAI	AGTACT	2 cut(s)	1081, 2847
Bme1390I	CCNGG	9 cut(s)	471, 495, 603, 1473, 1497, 1508, 1593, 2162, 3158
Bme18I	GGWCC	5 cut(s)	380, 1249, 1664, 3035, 3218
BmgT120I	GGNCC	6 cut(s)	380, 1249, 1664, 1880, 3035, 3218
BmrFI	CCNGG	9 cut(s)	471, 495, 603, 1473, 1497, 1508, 1593, 2162, 3158
BmrI	ACTGGG	2 cut(s)	1877, 2314
BmsI	GCATC	8 cut(s)	244, 250, 497, 548, 712, 1528, 2358, 2897
BmuI	ACTGGG	2 cut(s)	1877, 2314
BpiI	GAAGAC	4 cut(s)	92, 2298, 2630, 2904
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	4 cut(s)	516, 1989, 2183, 2573
Bpu10I	CCTNAGC	2 cut(s)	1542, 2406
BpuEI	CTTGAG	3 cut(s)	1738, 1876, 1931
BpuMI	CCSGG	2 cut(s)	603, 1593
BsaBI	GATNNNNATC	3 cut(s)	174, 549, 1689
BsaHI	GRCGYC	3 cut(s)	120, 475, 3112
BsaI	GGTCTC	3 cut(s)	799, 1482, 2840
BsaJI	CCNNGG	9 cut(s)	470, 483, 602, 1280, 1466, 1753, 1876, 2377, 2883
BsaWI	WCCGGW	3 cut(s)	446, 1898, 3215
Bse118I	RCCGGY	3 cut(s)	2626, 2993, 3215
Bse1I	ACTGG	8 cut(s)	688, 1154, 1883, 2019, 2122, 2309, 2728, 3025
Bse3DI	GCAATG	7 cut(s)	108, 904, 1203, 1371, 1734, 2621, 2676
Bse8I	GATNNNNATC	3 cut(s)	174, 549, 1689
BseAI	TCCGGA	1 cut(s)	446
BseBI	CCWGG	7 cut(s)	471, 495, 1473, 1497, 1508, 2162, 3158
BseDI	CCNNGG	9 cut(s)	470, 483, 602, 1280, 1466, 1753, 1876, 2377, 2883
BseJI	GATNNNNATC	3 cut(s)	174, 549, 1689
BseMI	GCAATG	7 cut(s)	108, 904, 1203, 1371, 1734, 2621, 2676
BseMII	CTCAG	4 cut(s)	12, 1013, 1533, 2046
BseNI	ACTGG	8 cut(s)	688, 1154, 1883, 2019, 2122, 2309, 2728, 3025
BseRI	GAGGAG	2 cut(s)	378, 1932
BseXI	GCAGC	6 cut(s)	79, 448, 969, 1045, 1180, 1542
BseYI	CCCAGC	1 cut(s)	2413
Bsh1236I	CGCG	1 cut(s)	2379
BshFI	GGCC	4 cut(s)	145, 1471, 1715, 1881
BshNI	GGYRCC	2 cut(s)	474, 1895
BshTI	ACCGGT	1 cut(s)	3215
BsiHKAI	GWGCWC	1 cut(s)	683
BsiSI	CCGG	7 cut(s)	447, 602, 1592, 1899, 2627, 2994, 3216
BsiWI	CGTACG	1 cut(s)	3122
BslFI	GGGAC	4 cut(s)	1235, 2322, 3021, 3123
BsmAI	GTCTC	5 cut(s)	799, 1482, 2459, 2840, 2898
BsmBI	CGTCTC	1 cut(s)	2459
BsmFI	GGGAC	4 cut(s)	1235, 2322, 3021, 3123
BsmI	GAATGC	1 cut(s)	1633
BsnI	GGCC	4 cut(s)	145, 1471, 1715, 1881
Bso31I	GGTCTC	3 cut(s)	799, 1482, 2840
Bsp1286I	GDGCHC	2 cut(s)	683, 1288
Bsp13I	TCCGGA	1 cut(s)	446
Bsp1407I	TGTACA	1 cut(s)	2618
Bsp19I	CCATGG	2 cut(s)	483, 1466
BspACI	CCGC	4 cut(s)	844, 1357, 2377, 2379
BspANI	GGCC	4 cut(s)	145, 1471, 1715, 1881
BspCNI	CTCAG	4 cut(s)	13, 1014, 1534, 2045
BspEI	TCCGGA	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	2379
BspMAI	CTGCAG	1 cut(s)	1651
BspMI	ACCTGC	1 cut(s)	2843
BspQI	GCTCTTC	1 cut(s)	3059
BspT107I	GGYRCC	2 cut(s)	474, 1895
BspTNI	GGTCTC	3 cut(s)	799, 1482, 2840
BsrDI	GCAATG	7 cut(s)	108, 904, 1203, 1371, 1734, 2621, 2676
BsrFI	RCCGGY	3 cut(s)	2626, 2993, 3215
BsrGI	TGTACA	1 cut(s)	2618
BsrI	ACTGG	8 cut(s)	688, 1154, 1883, 2019, 2122, 2309, 2728, 3025
BssAI	RCCGGY	3 cut(s)	2626, 2993, 3215
BssECI	CCNNGG	9 cut(s)	470, 483, 602, 1280, 1466, 1753, 1876, 2377, 2883
BssNI	GRCGYC	3 cut(s)	120, 475, 3112
BssSI	CACGAG	1 cut(s)	1578
BssT1I	CCWWGG	6 cut(s)	483, 1280, 1466, 1753, 1876, 2883
Bst2BI	CACGAG	1 cut(s)	1578
Bst2UI	CCWGG	7 cut(s)	471, 495, 1473, 1497, 1508, 2162, 3158
Bst6I	CTCTTC	8 cut(s)	243, 534, 1364, 2094, 2256, 2610, 2967, 3059
BstACI	GRCGYC	3 cut(s)	120, 475, 3112
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstAUI	TGTACA	1 cut(s)	2618
BstC8I	GCNNGC	8 cut(s)	115, 143, 344, 727, 2373, 2377, 2402, 2628
BstDEI	CTNAG	7 cut(s)	21, 975, 1022, 1542, 2032, 2406, 2501
BstDSI	CCRYGG	3 cut(s)	483, 1466, 2377
BstEII	GGTNACC	1 cut(s)	3020
BstENI	CCTNNNNNAGG	1 cut(s)	1437
BstFNI	CGCG	1 cut(s)	2379
BstH2I	RGCGCY	2 cut(s)	478, 2413
BstHHI	GCGC	4 cut(s)	333, 477, 897, 2412
BstMAI	GTCTC	5 cut(s)	799, 1482, 2459, 2840, 2898
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 192, 339, 1628, 2548
BstNI	CCWGG	7 cut(s)	471, 495, 1473, 1497, 1508, 2162, 3158
BstNSI	RCATGY	5 cut(s)	337, 2060, 2375, 2404, 2926
BstPI	GGTNACC	1 cut(s)	3020
BstSCI	CCNGG	9 cut(s)	469, 493, 601, 1471, 1495, 1506, 1591, 2160, 3156
BstSFI	CTRYAG	2 cut(s)	1647, 2530
BstUI	CGCG	1 cut(s)	2379
BstV1I	GCAGC	6 cut(s)	79, 448, 969, 1045, 1180, 1542
BstV2I	GAAGAC	4 cut(s)	92, 2298, 2630, 2904
BstX2I	RGATCY	5 cut(s)	63, 577, 1087, 1744, 2062
BstXI	CCANNNNNNTGG	1 cut(s)	68
BstYI	RGATCY	5 cut(s)	63, 577, 1087, 1744, 2062
BsuI	GTATCC	2 cut(s)	1883, 3096
BsuRI	GGCC	4 cut(s)	145, 1471, 1715, 1881
BtgI	CCRYGG	3 cut(s)	483, 1466, 2377
BtsIMutI	CAGTG	5 cut(s)	681, 729, 1091, 2871, 3022
BveI	ACCTGC	1 cut(s)	2843
Cac8I	GCNNGC	8 cut(s)	115, 143, 344, 727, 2373, 2377, 2402, 2628
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	4 cut(s)	333, 477, 897, 2412
Cfr10I	RCCGGY	3 cut(s)	2626, 2993, 3215
Cfr13I	GGNCC	6 cut(s)	380, 1249, 1664, 1880, 3035, 3218
Cfr42I	CCGCGG	1 cut(s)	2380
CseI	GACGC	2 cut(s)	1577, 2187
CspAI	ACCGGT	1 cut(s)	3215
DdeI	CTNAG	7 cut(s)	21, 975, 1022, 1542, 2032, 2406, 2501
DinI	GGCGCC	1 cut(s)	476
DraI	TTTAAA	3 cut(s)	1390, 2422, 2929
DraIII	CACNNNGTG	1 cut(s)	1988
DrdI	GACNNNNNNGTC	1 cut(s)	1073
DseDI	GACNNNNNNGTC	1 cut(s)	1073
Eam1104I	CTCTTC	8 cut(s)	243, 534, 1364, 2094, 2256, 2610, 2967, 3059
EarI	CTCTTC	8 cut(s)	243, 534, 1364, 2094, 2256, 2610, 2967, 3059
Eco130I	CCWWGG	6 cut(s)	483, 1280, 1466, 1753, 1876, 2883
Eco147I	AGGCCT	1 cut(s)	1715
Eco24I	GRGCYC	1 cut(s)	1288
Eco31I	GGTCTC	3 cut(s)	799, 1482, 2840
Eco32I	GATATC	1 cut(s)	921
Eco47I	GGWCC	5 cut(s)	380, 1249, 1664, 3035, 3218
Eco57I	CTGAAG	5 cut(s)	279, 681, 1115, 1212, 1455
Eco91I	GGTNACC	1 cut(s)	3020
EcoNI	CCTNNNNNAGG	1 cut(s)	1437
EcoO109I	RGGNCCY	2 cut(s)	1249, 3035
EcoO65I	GGTNACC	1 cut(s)	3020
EcoRII	CCWGG	7 cut(s)	469, 493, 1471, 1495, 1506, 2160, 3156
EcoRV	GATATC	1 cut(s)	921
EcoT14I	CCWWGG	6 cut(s)	483, 1280, 1466, 1753, 1876, 2883
EcoT22I	ATGCAT	2 cut(s)	541, 2373
EcoT38I	GRGCYC	1 cut(s)	1288
EgeI	GGCGCC	1 cut(s)	476
EheI	GGCGCC	1 cut(s)	476
ErhI	CCWWGG	6 cut(s)	483, 1280, 1466, 1753, 1876, 2883
Esp3I	CGTCTC	1 cut(s)	2459
FalI	AAGNNNNNCTT	2 cut(s)	3041, 3073
FaqI	GGGAC	4 cut(s)	1235, 2322, 3021, 3123
FauI	CCCGC	2 cut(s)	2372, 2384
FauNDI	CATATG	3 cut(s)	348, 355, 2566
FbaI	TGATCA	1 cut(s)	1690
FblI	GTMKAC	1 cut(s)	2201
Fnu4HI	GCNGC	7 cut(s)	93, 462, 845, 983, 1059, 1194, 1556
FriOI	GRGCYC	1 cut(s)	1288
Fsp4HI	GCNGC	7 cut(s)	93, 462, 845, 983, 1059, 1194, 1556
FspBI	CTAG	8 cut(s)	276, 786, 810, 1281, 1485, 2087, 2732, 3250
FspI	TGCGCA	1 cut(s)	896
GlaI	GCGC	4 cut(s)	332, 476, 896, 2411
GluI	GCNGC	7 cut(s)	93, 462, 845, 983, 1059, 1194, 1556
GsaI	CCCAGC	1 cut(s)	2417
GsuI	CTGGAG	4 cut(s)	516, 1989, 2183, 2573
HaeII	RGCGCY	2 cut(s)	478, 2413
HaeIII	GGCC	4 cut(s)	145, 1471, 1715, 1881
HapII	CCGG	7 cut(s)	447, 602, 1592, 1899, 2627, 2994, 3216
HgaI	GACGC	2 cut(s)	1577, 2187
HhaI	GCGC	4 cut(s)	333, 477, 897, 2412
Hin1I	GRCGYC	3 cut(s)	120, 475, 3112
Hin6I	GCGC	4 cut(s)	331, 475, 895, 2410
HinP1I	GCGC	4 cut(s)	331, 475, 895, 2410
HincII	GTYRAC	7 cut(s)	882, 1066, 1147, 1159, 1203, 2202, 3013
HindII	GTYRAC	7 cut(s)	882, 1066, 1147, 1159, 1203, 2202, 3013
HinfI	GANTC	6 cut(s)	5, 749, 958, 1678, 2361, 3210
HpaI	GTTAAC	1 cut(s)	882
HpaII	CCGG	7 cut(s)	447, 602, 1592, 1899, 2627, 2994, 3216
HphI	GGTGA	9 cut(s)	110, 251, 459, 549, 1123, 2869, 3082, 3196, 3205
Hpy99I	CGWCG	2 cut(s)	122, 2203
HpyCH4IV	ACGT	4 cut(s)	120, 1561, 1764, 3112
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 192, 339, 1628, 2548
HpyF3I	CTNAG	7 cut(s)	21, 975, 1022, 1542, 2032, 2406, 2501
HpySE526I	ACGT	4 cut(s)	120, 1561, 1764, 3112
Hsp92I	GRCGYC	3 cut(s)	120, 475, 3112
HspAI	GCGC	4 cut(s)	331, 475, 895, 2410
KasI	GGCGCC	1 cut(s)	474
KflI	GGGWCCC	2 cut(s)	1249, 3035
Kpn2I	TCCGGA	1 cut(s)	446
KpnI	GGTACC	1 cut(s)	1899
KroI	GCCGGC	1 cut(s)	2626
KroNI	GCCGGC	1 cut(s)	2628
Ksp22I	TGATCA	1 cut(s)	1690
KspAI	GTTAAC	1 cut(s)	882
KspI	CCGCGG	1 cut(s)	2380
LguI	GCTCTTC	1 cut(s)	3059
LmnI	GCTCC	5 cut(s)	497, 1099, 1190, 1291, 2437
Lsp1109I	GCAGC	6 cut(s)	79, 448, 969, 1045, 1180, 1542
LweI	GCATC	8 cut(s)	244, 250, 497, 548, 712, 1528, 2358, 2897
MaeI	CTAG	8 cut(s)	276, 786, 810, 1281, 1485, 2087, 2732, 3250
MaeII	ACGT	4 cut(s)	120, 1561, 1764, 3112
MaeIII	GTNAC	7 cut(s)	1111, 2148, 2300, 2338, 2875, 3020, 3211
MfeI	CAATTG	1 cut(s)	3132
MflI	RGATCY	5 cut(s)	63, 577, 1087, 1744, 2062
MhlI	GDGCHC	2 cut(s)	683, 1288
Mly113I	GGCGCC	1 cut(s)	475
MlyI	GAGTC	3 cut(s)	14, 743, 3219
MmeI	TCCRAC	2 cut(s)	1624, 2734
Mph1103I	ATGCAT	2 cut(s)	541, 2373
MroI	TCCGGA	1 cut(s)	446
MroNI	GCCGGC	1 cut(s)	2626
MroXI	GAANNNNTTC	3 cut(s)	2250, 2265, 2496
MslI	CAYNNNNRTG	1 cut(s)	734
MspA1I	CMGCKG	2 cut(s)	92, 2379
MspI	CCGG	7 cut(s)	447, 602, 1592, 1899, 2627, 2994, 3216
MspR9I	CCNGG	9 cut(s)	471, 495, 603, 1473, 1497, 1508, 1593, 2162, 3158
MunI	CAATTG	1 cut(s)	3132
Mva1269I	GAATGC	1 cut(s)	1633
MvaI	CCWGG	7 cut(s)	471, 495, 1473, 1497, 1508, 2162, 3158
MvnI	CGCG	1 cut(s)	2379
MwoI	GCNNNNNNNGC	5 cut(s)	147, 192, 339, 1628, 2548
NaeI	GCCGGC	1 cut(s)	2628
NarI	GGCGCC	1 cut(s)	475
NciI	CCSGG	2 cut(s)	603, 1593
NcoI	CCATGG	2 cut(s)	483, 1466
NdeI	CATATG	3 cut(s)	348, 355, 2566
NgoMIV	GCCGGC	1 cut(s)	2626
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	6 cut(s)	1111, 2148, 2300, 2338, 2875, 3211
NsbI	TGCGCA	1 cut(s)	896
NsiI	ATGCAT	2 cut(s)	541, 2373
NspI	RCATGY	5 cut(s)	337, 2060, 2375, 2404, 2926
OliI	CACNNNNGTG	1 cut(s)	734
PaeI	GCATGC	2 cut(s)	2375, 2404
PceI	AGGCCT	1 cut(s)	1715
PciI	ACATGT	1 cut(s)	2922
PciSI	GCTCTTC	1 cut(s)	3059
PcsI	WCGNNNNNNNCGW	2 cut(s)	1585, 3118
PctI	GAATGC	1 cut(s)	1633
PdiI	GCCGGC	1 cut(s)	2628
PdmI	GAANNNNTTC	3 cut(s)	2250, 2265, 2496
PfeI	GAWTC	3 cut(s)	958, 1678, 2361
Pfl23II	CGTACG	1 cut(s)	3122
PflMI	CCANNNNNTGG	1 cut(s)	1472
PfoI	TCCNGGA	2 cut(s)	493, 1495
PinAI	ACCGGT	1 cut(s)	3215
PkrI	GCNGC	7 cut(s)	94, 463, 846, 984, 1060, 1195, 1557
PleI	GAGTC	3 cut(s)	13, 743, 3218
PluTI	GGCGCC	1 cut(s)	478
PpsI	GAGTC	3 cut(s)	13, 743, 3218
PpuMI	RGGWCCY	2 cut(s)	1249, 3035
PscI	ACATGT	1 cut(s)	2922
PshBI	ATTAAT	1 cut(s)	2439
Psp5II	RGGWCCY	2 cut(s)	1249, 3035
Psp6I	CCWGG	7 cut(s)	469, 493, 1471, 1495, 1506, 2160, 3156
PspEI	GGTNACC	1 cut(s)	3020
PspFI	CCCAGC	1 cut(s)	2413
PspGI	CCWGG	7 cut(s)	469, 493, 1471, 1495, 1506, 2160, 3156
PspLI	CGTACG	1 cut(s)	3122
PspPI	GGNCC	6 cut(s)	380, 1249, 1664, 1880, 3035, 3218
PspPPI	RGGWCCY	2 cut(s)	1249, 3035
PstI	CTGCAG	1 cut(s)	1651
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	5 cut(s)	63, 577, 1087, 1744, 2062
PvuII	CAGCTG	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	734
SacII	CCGCGG	1 cut(s)	2380
SalI	GTCGAC	1 cut(s)	2200
SapI	GCTCTTC	1 cut(s)	3059
SatI	GCNGC	7 cut(s)	93, 462, 845, 983, 1059, 1194, 1556
Sau96I	GGNCC	6 cut(s)	380, 1249, 1664, 1880, 3035, 3218
ScaI	AGTACT	2 cut(s)	1081, 2847
SchI	GAGTC	3 cut(s)	14, 743, 3219
ScrFI	CCNGG	9 cut(s)	471, 495, 603, 1473, 1497, 1508, 1593, 2162, 3158
SduI	GDGCHC	2 cut(s)	683, 1288
SfaNI	GCATC	8 cut(s)	244, 250, 497, 548, 712, 1528, 2358, 2897
SfcI	CTRYAG	2 cut(s)	1647, 2530
SfoI	GGCGCC	1 cut(s)	476
Sfr303I	CCGCGG	1 cut(s)	2380
SgrBI	CCGCGG	1 cut(s)	2380
SinI	GGWCC	5 cut(s)	380, 1249, 1664, 3035, 3218
SmiMI	CAYNNNNRTG	1 cut(s)	734
SmlI	CTYRAG	3 cut(s)	1717, 1855, 1946
SmoI	CTYRAG	3 cut(s)	1717, 1855, 1946
SphI	GCATGC	2 cut(s)	2375, 2404
SseBI	AGGCCT	1 cut(s)	1715
SsiI	CCGC	4 cut(s)	844, 1357, 2377, 2379
SspDI	GGCGCC	1 cut(s)	474
SspMI	CTAG	8 cut(s)	276, 786, 810, 1281, 1485, 2087, 2732, 3250
StuI	AGGCCT	1 cut(s)	1715
StyD4I	CCNGG	9 cut(s)	469, 493, 601, 1471, 1495, 1506, 1591, 2160, 3156
StyI	CCWWGG	6 cut(s)	483, 1280, 1466, 1753, 1876, 2883
TaiI	ACGT	4 cut(s)	123, 1564, 1767, 3115
TaqI	TCGA	6 cut(s)	963, 1008, 1639, 1828, 2201, 2470
TaqII	GACCGA	1 cut(s)	1047
TatI	WGTACW	4 cut(s)	838, 1079, 2618, 2845
TauI	GCSGC	1 cut(s)	847
TfiI	GAWTC	3 cut(s)	958, 1678, 2361
TscAI	CASTG	5 cut(s)	688, 736, 1098, 2878, 3022
TseFI	GTSAC	6 cut(s)	1111, 2148, 2300, 2338, 2875, 3211
TseI	GCWGC	6 cut(s)	92, 461, 982, 1058, 1193, 1555
Tsp45I	GTSAC	6 cut(s)	1111, 2148, 2300, 2338, 2875, 3211
TspGWI	ACGGA	1 cut(s)	2916
TspRI	CASTG	5 cut(s)	688, 736, 1098, 2878, 3022
Van91I	CCANNNNNTGG	1 cut(s)	1472
VpaK11BI	GGWCC	5 cut(s)	380, 1249, 1664, 3035, 3218
VspI	ATTAAT	1 cut(s)	2439
XagI	CCTNNNNNAGG	1 cut(s)	1437
XapI	RAATTY	4 cut(s)	1232, 1385, 2493, 2651
XbaI	TCTAGA	3 cut(s)	785, 2086, 2731
XceI	RCATGY	5 cut(s)	337, 2060, 2375, 2404, 2926
XmaJI	CCTAGG	1 cut(s)	1280
XmiI	GTMKAC	1 cut(s)	2201
XmnI	GAANNNNTTC	3 cut(s)	2250, 2265, 2496
XspI	CTAG	8 cut(s)	276, 786, 810, 1281, 1485, 2087, 2732, 3250
ZraI	GACGTC	2 cut(s)	121, 3113
ZrmI	AGTACT	2 cut(s)	1081, 2847
Zsp2I	ATGCAT	2 cut(s)	541, 2373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.