Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018955

Physical Location & Seq

Genomic Coordinates Reverse (-)

10974430 .. 10974926

Gene Structure 497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 192 bp

ATGTACTTCAAATGCGGCGATGAGGTTGATGCACGCAAGGTGTTTGATAAAATGTTTGTGAGGAATTTGTACTCGTGGAACAACATGCTGTCTGGGTATGCGAAGATGAGGAATCTGAAGGAGGCCCGGAGCTTGTTTGATAAAATGCCTGAGAGGGATGTTGTGTCCTGGAACCTCCGCAACTCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

63

Amino Acids

7.62

Weight (kDa)

9.51

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	22 - 54	2.4e-07	PPR repeat family
PPR	PF01535	24 - 53	2.1e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018955)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323521 RchiOBHm_Chr1g0323551 RchiOBHm_Chr1g0323691 RchiOBHm_Chr6g0265171 RchiOBHm_Chr6g0311141
rosa_laevigata	RLG00000030330
rosa_rugosa	Rorug01G0038300
rosa_samantha	Rh1AG056000 Rh1CG056400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 178
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	2 cut(s)	5, 71
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
AoxI	GGCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	1 cut(s)	127
BauI	CACGAG	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	127
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	127, 169
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	2 cut(s)	127, 169
BmsI	GCATC	1 cut(s)	19
BpuMI	CCSGG	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	127
BsnI	GGCC	1 cut(s)	125
BspACI	CCGC	2 cut(s)	15, 178
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	173
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	2 cut(s)	125, 167
BsuRI	GGCC	1 cut(s)	125
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	4, 70
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	2 cut(s)	125, 132
CviKI_1	RGCY	2 cut(s)	125, 132
CviQI	GTAC	2 cut(s)	4, 70
DdeI	CTNAG	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	167
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	86, 99, 190
FatI	CATG	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	16
GluI	GCNGC	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	127
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	5 cut(s)	78, 140, 154, 162, 181
LweI	GCATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	115
MluCI	AATT	1 cut(s)	64
MnlI	CCTC	6 cut(s)	16, 54, 102, 115, 147, 185
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	127, 169
MvaI	CCWGG	1 cut(s)	169
NciI	CCSGG	1 cut(s)	127
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	124
RsaI	GTAC	2 cut(s)	5, 71
RsaNI	GTAC	2 cut(s)	4, 70
SatI	GCNGC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	127, 169
SetI	ASST	4 cut(s)	27, 42, 134, 177
SfaNI	GCATC	1 cut(s)	19
Sse9I	AATT	1 cut(s)	64
SsiI	CCGC	2 cut(s)	15, 178
StyD4I	CCNGG	2 cut(s)	125, 167
TasI	AATT	1 cut(s)	64
TatI	WGTACW	2 cut(s)	3, 69
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	112
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.