Rh1AG056000

DYW family of nucleic acid deaminases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018955
Physical Location & Seq
Reverse (-)
9138062 .. 9138400
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG056000.1

Sequence Viewer

Length: 339 bp
ATGAGGAATCTGAAGGAGGCCCGGAGCTTGTTTGAGAAAATGCCTGAGAGGGATGTTGTGTCCTGGAACACCATGGTGATTGGTTGTGCCCAGACTGGGGAATGTGATGAGGCTTTGAGGTTTTATAGAGAGTCGTGGAGATCGTCGGTTGCTGGTGTTTTGACTGGGTGTGTGAAGATGAGGGAATGGGAGCTTATTACTTTATTAGGCAGGCTCATGGGCAGGTTTTGGTTGCTGGGTTTTTGTCAAATGTGGCGCTTTCGAGTTCGGTGGTGGATTCTTATGCCAAGTGTGGGGAGATGGCGGATACCAGGAGATTGTTCGATGAGATGGCTGTGA

Protein Analysis

112

Amino Acids

13.45

Weight (kDa)

9.81

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 20 - 45 8.7e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 213
AciI CCGC 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 32
AfiI CCNNNNNNNGG 3 cut(s) 96, 97, 293
AjnI CCWGG 2 cut(s) 62, 310
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 2 cut(s) 27, 193
AluI AGCT 2 cut(s) 27, 193
AoxI GGCC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 19
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 91
BccI CCATC 2 cut(s) 294, 324
BciT130I CCWGG 2 cut(s) 64, 312
BciVI GTATCC 1 cut(s) 300
BcnI CCSGG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 213
BfuI GTATCC 1 cut(s) 300
Bme1390I CCNGG 3 cut(s) 22, 64, 312
BmgT120I GGNCC 1 cut(s) 19
BmrFI CCNGG 3 cut(s) 22, 64, 312
BmrI ACTGGG 2 cut(s) 105, 174
BmuI ACTGGG 2 cut(s) 105, 174
BpuMI CCSGG 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 97, 293
Bse1I ACTGG 2 cut(s) 100, 169
BseBI CCWGG 2 cut(s) 64, 312
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 3 cut(s) 96, 97, 293
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 2 cut(s) 100, 169
BseSI GKGCMC 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 235
BshFI GGCC 1 cut(s) 20
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 3 cut(s) 96, 97, 293
BsnI GGCC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 140
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 213
BsrI ACTGG 2 cut(s) 100, 169
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 64, 312
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 45
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 259
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 143
BstMBI GATC 1 cut(s) 140
BstNI CCWGG 2 cut(s) 64, 312
BstSCI CCNGG 3 cut(s) 20, 62, 310
BstSLI GKGCMC 1 cut(s) 91
BsuI GTATCC 1 cut(s) 300
BsuRI GGCC 1 cut(s) 20
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 19
CviAII CATG 2 cut(s) 73, 217
CviJI RGCY 6 cut(s) 20, 27, 113, 193, 214, 334
CviKI_1 RGCY 6 cut(s) 20, 27, 113, 193, 214, 334
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 142
DpnII GATC 1 cut(s) 140
EciI GGCGGA 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 32
EcoRII CCWGG 2 cut(s) 62, 310
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 2 cut(s) 76, 220
FaiI YATR 4 cut(s) 74, 126, 218, 284
FatI CATG 2 cut(s) 72, 216
FokI GGATG 1 cut(s) 65
GlaI GCGC 1 cut(s) 257
GsaI CCCAGC 1 cut(s) 239
HaeII RGCGCY 1 cut(s) 259
HaeIII GGCC 1 cut(s) 20
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 258
Hin1II CATG 2 cut(s) 76, 220
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HinfI GANTC 3 cut(s) 7, 131, 277
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 12
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 7
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 2 cut(s) 76, 220
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 140
LmnI GCTCC 2 cut(s) 24, 190
MalI GATC 1 cut(s) 142
MboI GATC 1 cut(s) 140
MboII GAAGA 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 91
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 5 cut(s) 10, 42, 103, 111, 174
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 3 cut(s) 22, 64, 312
MvaI CCWGG 2 cut(s) 64, 312
NciI CCSGG 1 cut(s) 22
NcoI CCATGG 1 cut(s) 72
NdeII GATC 1 cut(s) 140
NlaIII CATG 2 cut(s) 76, 220
OliI CACNNNNGTG 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PfeI GAWTC 2 cut(s) 7, 277
PfoI TCCNGGA 1 cut(s) 62
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 62, 310
PspFI CCCAGC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 62, 310
PspPI GGNCC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 74
Sau3AI GATC 1 cut(s) 140
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 3 cut(s) 22, 64, 312
SduI GDGCHC 1 cut(s) 91
SetI ASST 4 cut(s) 29, 122, 195, 227
SmiMI CAYNNNNRTG 1 cut(s) 74
SsiI CCGC 1 cut(s) 304
StyD4I CCNGG 3 cut(s) 20, 62, 310
StyI CCWWGG 1 cut(s) 72
TaqI TCGA 2 cut(s) 262, 323
TfiI GAWTC 2 cut(s) 7, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.