Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018955

Physical Location & Seq

Genomic Coordinates Forward (+)

59704362 .. 59704910

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTACTTCAAATGCGGCGATGTGGTTGATGCACGCCAGATGTTTGATAAAATGTTTGTGAGAAATTTGTACTCGTGGAACAATATGCTATCTGGGTATGCGAAGATGAGGAATCTGAAGGAGGCCCGGACCTTGTTTGTTAAAATGCCTGAGAGGGATGTTGTGTCCTGGAACACCATGGTGATTGGTTATGCGCAGACTGGGGAATGTGATGAGGCTTTGAGGTTTTATAGAGAGTTGCGCAGATCGTCGGAAGGGCGTAGGCTTTTCAAGTCCATGACTGATGATTATGGCATTGTTCCTCATGAGGAACATTATGCATGCTTAATTGATCTCTTGGGTCGAGCTGGATGTTTTAATGAGTTGATGAACCAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

127

Amino Acids

14.91

Weight (kDa)

7.65

Isoelectric Point (pI)

61.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	24 - 53	2.5e-07	PPR repeat
PPR	PF01535	55 - 83	4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018955)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323521 RchiOBHm_Chr1g0323551 RchiOBHm_Chr1g0323691 RchiOBHm_Chr6g0265171 RchiOBHm_Chr6g0311141
rosa_laevigata	RLG00000030330
rosa_rugosa	Rorug01G0038300
rosa_samantha	Rh1AG056000 Rh1CG056400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	195, 242
AciI	CCGC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	2 cut(s)	5, 71
AgsI	TTSAA	2 cut(s)	10, 271
AjnI	CCWGG	1 cut(s)	167
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	347, 376
AluI	AGCT	2 cut(s)	347, 376
AoxI	GGCC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	2 cut(s)	196, 243
AspS9I	GGNCC	2 cut(s)	124, 129
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	127
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
Bme1390I	CCNGG	2 cut(s)	127, 169
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	124, 129
BmrFI	CCNGG	2 cut(s)	127, 169
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	163, 356
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	127
BsnI	GGCC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	245, 331
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	142
BspHI	TCATGA	1 cut(s)	304
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	245, 331
BssSI	CACGAG	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	34, 322
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	163, 356
BstHHI	GCGC	2 cut(s)	196, 243
BstKTI	GATC	2 cut(s)	248, 334
BstMBI	GATC	2 cut(s)	245, 331
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	125, 167
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	177
BtgZI	GCGATG	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	163, 356
Cac8I	GCNNGC	2 cut(s)	34, 322
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	2 cut(s)	196, 243
Cfr13I	GGNCC	2 cut(s)	124, 129
Csp6I	GTAC	2 cut(s)	4, 70
CviAII	CATG	4 cut(s)	178, 277, 305, 321
CviJI	RGCY	5 cut(s)	125, 218, 265, 347, 376
CviKI_1	RGCY	5 cut(s)	125, 218, 265, 347, 376
CviQI	GTAC	2 cut(s)	4, 70
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	2 cut(s)	247, 333
DpnII	GATC	2 cut(s)	245, 331
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	4 cut(s)	181, 280, 308, 324
FatI	CATG	4 cut(s)	177, 276, 304, 320
Fnu4HI	GCNGC	1 cut(s)	16
FokI	GGATG	2 cut(s)	170, 363
Fsp4HI	GCNGC	1 cut(s)	16
FspI	TGCGCA	2 cut(s)	195, 242
GlaI	GCGC	2 cut(s)	195, 242
GluI	GCNGC	1 cut(s)	16
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	127
HhaI	GCGC	2 cut(s)	196, 243
Hin1II	CATG	4 cut(s)	181, 280, 308, 324
Hin6I	GCGC	2 cut(s)	194, 241
HinP1I	GCGC	2 cut(s)	194, 241
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	127
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	117, 253
Hpy188III	TCNNGA	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	112, 248
HpyCH4V	TGCA	2 cut(s)	32, 320
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	4 cut(s)	181, 280, 308, 324
HspAI	GCGC	2 cut(s)	194, 241
Kzo9I	GATC	2 cut(s)	245, 331
LpnPI	CCDG	8 cut(s)	50, 78, 140, 154, 162, 181, 186, 333
LweI	GCATC	1 cut(s)	19
MalI	GATC	2 cut(s)	247, 333
MboI	GATC	2 cut(s)	245, 331
MboII	GAAGA	1 cut(s)	115
MluCI	AATT	2 cut(s)	64, 327
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	7 cut(s)	102, 115, 147, 208, 216, 301, 312
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	3 cut(s)	141, 326, 357
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	127, 169
MvaI	CCWGG	1 cut(s)	169
NciI	CCSGG	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	245, 331
NlaIII	CATG	4 cut(s)	181, 280, 308, 324
NsbI	TGCGCA	2 cut(s)	195, 242
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	324
OliI	CACNNNNGTG	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	324
PagI	TCATGA	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	124, 129
RsaI	GTAC	2 cut(s)	5, 71
RsaNI	GTAC	2 cut(s)	4, 70
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	141, 326, 357
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	2 cut(s)	245, 331
Sau96I	GGNCC	2 cut(s)	124, 129
ScrFI	CCNGG	2 cut(s)	127, 169
SetI	ASST	4 cut(s)	134, 227, 349, 378
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	179
SphI	GCATGC	1 cut(s)	324
Sse9I	AATT	2 cut(s)	64, 327
SsiI	CCGC	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	125, 167
StyI	CCWWGG	1 cut(s)	177
TaqI	TCGA	1 cut(s)	343
TasI	AATT	2 cut(s)	64, 327
TatI	WGTACW	2 cut(s)	3, 69
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	3 cut(s)	141, 326, 357
Tru9I	TTAA	3 cut(s)	141, 326, 357
VpaK11BI	GGWCC	1 cut(s)	129
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	324
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.