Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0018955

Physical Location & Seq

Genomic Coordinates Reverse (-)

11084532 .. 11085487

Gene Structure 956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG056400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAACTTCAAATGCGGTGATGAGGTTGATGCACGCAAGGTGTTTGATAAAATGTTTGTGAGGAATTTGTACTCGTGGAACAATATGCCATCTGGGTATGCGAAGATGAGGAATCTGAAGGAGGCCCGGAACTTGTTTGAGAAAATGCCTGAGAGGGATGTTGTGTTCTGGAACACCGTGGTGATTGGTTATGCCCAGAATGGGGAATGTGATGAGGCTTTGAGGTTTTATAGAGAGTTGCAGAGATTGTCGGTTGGGTTTAATGAGTTTAGTTTTGCGGGTGTTTTGACTCTGTGTGTGAAGATGGGGGAATGGGAGCTTATTAGGCAAGCTCATGGGCAGTGTGGGGAGATGGTGGATGCTAGGAGATTGTTCGATGAGATGGCTGTGAGGGATGTTCTTGCTTGGACCACACTGGTTTTGGGATATGCCAAATGGGGTGATATGAAATCAGCTAGTGAGTTGTTTGATCGGATGCCTGAGAAGAACCCGGTGTCATGGACATCTATGATTTCGGGGTATGTTAGGAATGGATTGGGGCATGAAGCGCTTGCATTGTTTGCAAAGATGATGCTGTTTCAAATCAGGCCTGATCAGTTTACCTTTAGTAGTTGCCTTTGTGCTTGTGCTAGTATAGCTTCGCTTAAGCATGGTAAACAAATTCATGCCTCTTTAGTACGAAGTAATTTAAGACCCAACACGATTGTTGTGAGTTCTCTTATCGACATGTATTCCAAATGCGGCAATTTGGGGGCTAGAAGGCAGGTATTCAAGCTCATGGGTGATAAGCAAGACACCGTGTTATGGAACACAATGATGTCTACCTTAGCACAACATGGTCATGGTATAGAGGCATTGCAGATGTTTGAAGACAGAGGCGGAGCCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

296

Amino Acids

33.7

Weight (kDa)

8.58

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	52 - 99	4.6e-06	PPR repeat family
PPR	PF01535	135 - 163	7.6e-06	PPR repeat
PPR_2	PF13041	163 - 210	9.6e-11	PPR repeat family
PPR	PF01535	165 - 191	4.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018955)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323521 RchiOBHm_Chr1g0323551 RchiOBHm_Chr1g0323691 RchiOBHm_Chr6g0265171 RchiOBHm_Chr6g0311141
rosa_laevigata	RLG00000030330
rosa_rugosa	Rorug01G0038300
rosa_samantha	Rh1AG056000 Rh1CG056400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	821
AciI	CCGC	4 cut(s)	15, 278, 741, 879
AcsI	RAATTY	2 cut(s)	64, 660
AcuI	CTGAAG	1 cut(s)	137
AfaI	GTAC	2 cut(s)	71, 678
AfeI	AGCGCT	1 cut(s)	549
AfiI	CCNNNNNNNGG	3 cut(s)	201, 202, 804
AflII	CTTAAG	1 cut(s)	644
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	4 cut(s)	10, 581, 772, 869
AleI	CACNNNNGTG	1 cut(s)	179
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AluBI	AGCT	5 cut(s)	319, 332, 455, 638, 775
AluI	AGCT	5 cut(s)	319, 332, 455, 638, 775
Aor51HI	AGCGCT	1 cut(s)	549
AoxI	GGCC	2 cut(s)	123, 587
ApoI	RAATTY	2 cut(s)	64, 660
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	124, 408
AsuC2I	CCSGG	2 cut(s)	127, 491
AsuHPI	GGTGA	4 cut(s)	29, 193, 452, 794
AvaII	GGWCC	1 cut(s)	408
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	876
BccI	CCATC	4 cut(s)	97, 298, 346, 376
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	2 cut(s)	127, 491
BfaI	CTAG	4 cut(s)	363, 456, 630, 756
BfoI	RGCGCY	1 cut(s)	551
BfrI	CTTAAG	1 cut(s)	644
BfuAI	ACCTGC	1 cut(s)	754
BisI	GCNGC	1 cut(s)	742
BlsI	GCNGC	1 cut(s)	743
Bme1390I	CCNGG	2 cut(s)	127, 491
Bme18I	GGWCC	1 cut(s)	408
BmgT120I	GGNCC	2 cut(s)	124, 408
BmiI	GGNNCC	1 cut(s)	883
BmrFI	CCNGG	2 cut(s)	127, 491
BmsI	GCATC	4 cut(s)	19, 349, 465, 561
BpiI	GAAGAC	1 cut(s)	876
Bpu10I	CCTNAGC	1 cut(s)	826
BpuMI	CCSGG	2 cut(s)	127, 491
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 202, 804
Bse1I	ACTGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	854
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	4 cut(s)	163, 364, 400, 480
BseLI	CCNNNNNNNGG	3 cut(s)	201, 202, 804
BseMI	GCAATG	1 cut(s)	854
BseMII	CTCAG	2 cut(s)	141, 471
BseNI	ACTGG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	125, 589
BsiSI	CCGG	2 cut(s)	127, 491
BslI	CCNNNNNNNGG	3 cut(s)	201, 202, 804
BsnI	GGCC	2 cut(s)	125, 589
Bsp143I	GATC	2 cut(s)	469, 592
BspACI	CCGC	4 cut(s)	15, 278, 741, 879
BspANI	GGCC	2 cut(s)	125, 589
BspCNI	CTCAG	2 cut(s)	142, 472
BspLI	GGNNCC	1 cut(s)	883
BspMI	ACCTGC	1 cut(s)	754
BspTI	CTTAAG	1 cut(s)	644
BsrDI	GCAATG	1 cut(s)	854
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	469, 592
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	178, 799
BstAFI	CTTAAG	1 cut(s)	644
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	3 cut(s)	34, 330, 552
BstDEI	CTNAG	3 cut(s)	150, 480, 826
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	4 cut(s)	163, 364, 400, 480
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	2 cut(s)	472, 595
BstMBI	GATC	2 cut(s)	469, 592
BstMWI	GCNNNNNNNGC	4 cut(s)	325, 547, 560, 635
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	125, 489
BstV2I	GAAGAC	1 cut(s)	876
BsuRI	GGCC	2 cut(s)	125, 589
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	4 cut(s)	163, 364, 400, 480
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	347, 413
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	3 cut(s)	34, 330, 552
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	2 cut(s)	124, 408
Csp6I	GTAC	2 cut(s)	70, 677
CviAII	CATG	9 cut(s)	335, 498, 542, 650, 665, 727, 778, 836, 842
CviQI	GTAC	2 cut(s)	70, 677
DdeI	CTNAG	3 cut(s)	150, 480, 826
DpnI	GATC	2 cut(s)	471, 594
DpnII	GATC	2 cut(s)	469, 592
Eco147I	AGGCCT	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	408
Eco47III	AGCGCT	1 cut(s)	549
Eco57I	CTGAAG	1 cut(s)	137
FaeI	CATG	9 cut(s)	338, 501, 545, 653, 668, 730, 781, 839, 845
FatI	CATG	9 cut(s)	334, 497, 541, 649, 664, 726, 777, 835, 841
FauI	CCCGC	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	821
Fnu4HI	GCNGC	1 cut(s)	742
FokI	GGATG	4 cut(s)	170, 371, 407, 487
Fsp4HI	GCNGC	1 cut(s)	742
FspBI	CTAG	4 cut(s)	363, 456, 630, 756
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	1 cut(s)	742
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	2 cut(s)	125, 589
HapII	CCGG	2 cut(s)	127, 491
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	9 cut(s)	338, 501, 545, 653, 668, 730, 781, 839, 845
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HinfI	GANTC	2 cut(s)	112, 289
HpaII	CCGG	2 cut(s)	127, 491
HphI	GGTGA	4 cut(s)	29, 193, 452, 794
Hpy166II	GTNNAC	3 cut(s)	600, 656, 822
Hpy188I	TCNGA	2 cut(s)	117, 474
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	3 cut(s)	600, 656, 822
HpyAV	CCTTC	2 cut(s)	112, 753
HpyCH4III	ACNGT	2 cut(s)	178, 799
HpyCH4V	TGCA	5 cut(s)	32, 241, 554, 563, 859
HpyF10VI	GCNNNNNNNGC	4 cut(s)	325, 547, 560, 635
HpyF3I	CTNAG	3 cut(s)	150, 480, 826
Hsp92II	CATG	9 cut(s)	338, 501, 545, 653, 668, 730, 781, 839, 845
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	2 cut(s)	469, 592
LmnI	GCTCC	2 cut(s)	316, 881
LweI	GCATC	4 cut(s)	19, 349, 465, 561
MaeI	CTAG	4 cut(s)	363, 456, 630, 756
MalI	GATC	2 cut(s)	471, 594
MboI	GATC	2 cut(s)	469, 592
MboII	GAAGA	4 cut(s)	115, 313, 496, 881
MluCI	AATT	4 cut(s)	64, 660, 685, 745
MlyI	GAGTC	1 cut(s)	283
MseI	TTAA	3 cut(s)	261, 645, 689
MslI	CAYNNNNRTG	3 cut(s)	179, 815, 840
MspCI	CTTAAG	1 cut(s)	644
MspI	CCGG	2 cut(s)	127, 491
MspR9I	CCNGG	2 cut(s)	127, 491
MwoI	GCNNNNNNNGC	4 cut(s)	325, 547, 560, 635
NciI	CCSGG	2 cut(s)	127, 491
NdeII	GATC	2 cut(s)	469, 592
NlaIII	CATG	9 cut(s)	338, 501, 545, 653, 668, 730, 781, 839, 845
NlaIV	GGNNCC	1 cut(s)	883
NspI	RCATGY	1 cut(s)	730
OliI	CACNNNNGTG	1 cut(s)	179
PceI	AGGCCT	1 cut(s)	589
PciI	ACATGT	1 cut(s)	726
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	743
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PscI	ACATGT	1 cut(s)	726
PspN4I	GGNNCC	1 cut(s)	883
PspPI	GGNCC	2 cut(s)	124, 408
RsaI	GTAC	2 cut(s)	71, 678
RsaNI	GTAC	2 cut(s)	70, 677
RseI	CAYNNNNRTG	3 cut(s)	179, 815, 840
SaqAI	TTAA	3 cut(s)	261, 645, 689
SatI	GCNGC	1 cut(s)	742
Sau3AI	GATC	2 cut(s)	469, 592
Sau96I	GGNCC	2 cut(s)	124, 408
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	127, 491
SfaNI	GCATC	4 cut(s)	19, 349, 465, 561
SinI	GGWCC	1 cut(s)	408
SmiMI	CAYNNNNRTG	3 cut(s)	179, 815, 840
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	4 cut(s)	64, 660, 685, 745
SseBI	AGGCCT	1 cut(s)	589
SsiI	CCGC	4 cut(s)	15, 278, 741, 879
SspMI	CTAG	4 cut(s)	363, 456, 630, 756
StuI	AGGCCT	1 cut(s)	589
StyD4I	CCNGG	2 cut(s)	125, 489
TaaI	ACNGT	2 cut(s)	178, 799
TaqI	TCGA	2 cut(s)	375, 723
TasI	AATT	4 cut(s)	64, 660, 685, 745
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	1 cut(s)	744
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	3 cut(s)	261, 645, 689
Tru9I	TTAA	3 cut(s)	261, 645, 689
TscAI	CASTG	2 cut(s)	347, 420
TspDTI	ATGAA	4 cut(s)	17, 461, 558, 653
TspRI	CASTG	2 cut(s)	347, 420
Vha464I	CTTAAG	1 cut(s)	644
VpaK11BI	GGWCC	1 cut(s)	408
XapI	RAATTY	2 cut(s)	64, 660
XceI	RCATGY	1 cut(s)	730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	821
XspI	CTAG	4 cut(s)	363, 456, 630, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.