Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001363

Physical Location & Seq

Genomic Coordinates Reverse (-)

6299589 .. 6302918

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0038300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAGGCGAGGGTGTTCCTGCTTACTAGCACATCACTTCCATTTTCACTTATTCCATCGTCTTCAACCAATCCAAGTCTTTGGTTCTCGCCTTTAAGACCCACATATGCACCTGGCACAGTCTTGAGGAGGAGCATGAAAAAGGAAGAGCCACTATTAGAAGGTCTTCCGAAAGAGTACTACGATGATGAATGGCAATCGCAACAAAGGGAGAAAACTAAGGAGTTTCATCGAAGACGTCAAGAGGAAGACGAAGAGGAGGAGAGAAAGATTGAAGAGTACCGTGAGATCGGCATGAGATTGAAGGATTATCCAGAAGAAGATGTTCGGAAAGCTCGGAAATTGATTTCCAGCTTTATTAGAGCGGCTGAAGAAGTGGAAGAGAAAATTGAGGAAGCTGGTGAGAAAGGGGAACTGACTGAACTTGTTTTGATGGTCATATGGAATCGCCTTGACCTCGCTCGACGGGATGATGTTATTAGAAGTCTTGATTTGCTATACAGAAGGATTGAGGCTGAGATTTTGAAACAGGAGGCCTCACCTGCCATGCGACTTCTCAACGATCTTTTAAATATGCATGATGGTTTTGATGATGAAGGGTGGCAGAAGGAATGTAAAAAGCGCATGATCGATGCATTTCCACGCGAGGATCCATTTAGCATTTTAGTTCCAGAAGGATTTGACATTGATAAGCATGAGGGACCTCTTCGGCCACCGCTTGAAGTAGATGACGCTCTATTGAGGGTAGACTTTGTAAGAGAGGTTGATGCACTGCTACAAGAGGTTCGGGCTGAGCAAAGCGAAGTACAAATTACACAAGGGCTTGATCCTGAATCCATTGCAAGTAGATTGAAGCAGCAGGAGAAGCAACGGGCCATACGGCTGGTAGAAGCTATACTAAACCTGGCCATTAATTTAAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

308

Amino Acids

36.22

Weight (kDa)

4.9

Isoelectric Point (pI)

74.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21090
fragaria_vesca	FvH4_1g26660
malus_domestica	MD05G1117900.v1.1 MD10G1120900.v1.1
prunus_persica	Prupe.8G162400_v2.0.a1
pyrus_communis	pycom05g11190 pycom10g10410 pycom10g10420
rosa_chinensis	RchiOBHm_Chr1g0323421 RchiOBHm_Chr1g0323511 RchiOBHm_Chr1g0323621 RchiOBHm_Chr1g0323681 RchiOBHm_Chr1g0323771
rosa_laevigata	RLG00000030297 RLG00000030299 RLG00000030300 RLG00000030302 RLG00000030317 RLG00000030324
rosa_multiflora	Rmu_sc0000252.1_g000001 Rmu_sc0000252.1_g000002 Rmu_sc0000252.1_g000009 Rmu_sc0000252.1_g000012 Rmu_sc0000252.1_g000023 Rmu_sc0000252.1_g000030 Rmu_sc0000804.1_g000006 Rmu_sc0002634.1_g000016 Rmu_sc0002634.1_g000019 Rmu_sc0008902.1_g000002 Rmu_sc0036879.1_g000001 Rmu_sc0036879.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326420 Rroxscaffold_4G00326490 Rroxscaffold_4G00326520 Rroxscaffold_4G00326590
rosa_rugosa	Rorug01G0038100 Rorug01G0038200 Rorug01G0038300 Rorug01G0039100.1 Rorug01G0039200 Rorug01G0039500
rosa_samantha	Rh1AG055800 Rh1AG055900 Rh1AG056300 Rh1AG056400 Rh1AG056500 Rh1AG056700 Rh1BG047700 Rh1CG056700 Rh1CG058000 Rh1DG061800
rosa_wichuraiana	Rw1G004810 Rw1G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	550
AatII	GACGTC	1 cut(s)	241
Acc36I	ACCTGC	1 cut(s)	550
AccBSI	CCGCTC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	747
AccII	CGCG	1 cut(s)	645
AciI	CCGC	2 cut(s)	365, 716
AclWI	GGATC	3 cut(s)	644, 657, 821
AcoI	YGGCCR	2 cut(s)	710, 906
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	238
AfaI	GTAC	3 cut(s)	179, 281, 807
AgsI	TTSAA	6 cut(s)	66, 275, 304, 526, 722, 853
AjnI	CCWGG	2 cut(s)	112, 903
AluBI	AGCT	4 cut(s)	335, 354, 398, 893
AluI	AGCT	4 cut(s)	335, 354, 398, 893
AlwI	GGATC	3 cut(s)	644, 657, 821
AoxI	GGCC	4 cut(s)	534, 710, 873, 906
ApeKI	GCWGC	1 cut(s)	856
AseI	ATTAAT	1 cut(s)	912
Asp700I	GAANNNNTTC	2 cut(s)	165, 324
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	2 cut(s)	701, 873
AsuHPI	GGTGA	2 cut(s)	413, 531
AvaII	GGWCC	1 cut(s)	701
BalI	TGGCCA	1 cut(s)	908
BamHI	GGATCC	1 cut(s)	649
BbsI	GAAGAC	4 cut(s)	54, 158, 241, 255
BbvI	GCAGC	1 cut(s)	868
BccI	CCATC	3 cut(s)	64, 427, 575
BceAI	ACGGC	1 cut(s)	896
BciT130I	CCWGG	2 cut(s)	114, 905
BfaI	CTAG	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	550
BisI	GCNGC	2 cut(s)	366, 857
BlpI	GCTNAGC	1 cut(s)	792
BlsI	GCNGC	2 cut(s)	367, 858
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	114, 905
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	2 cut(s)	701, 873
BmiI	GGNNCC	2 cut(s)	651, 702
BmrFI	CCNGG	2 cut(s)	114, 905
BmsI	GCATC	2 cut(s)	622, 757
BpiI	GAAGAC	4 cut(s)	54, 158, 241, 255
Bpu1102I	GCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	114, 905
BseCI	ATCGAT	1 cut(s)	630
BseGI	GGATG	1 cut(s)	475
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	2 cut(s)	507, 783
BseRI	GAGGAG	4 cut(s)	142, 145, 272, 275
BseXI	GCAGC	1 cut(s)	868
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	4 cut(s)	536, 712, 875, 908
BshVI	ATCGAT	1 cut(s)	630
BslFI	GGGAC	1 cut(s)	714
BsmFI	GGGAC	1 cut(s)	714
BsnI	GGCC	4 cut(s)	536, 712, 875, 908
Bsp143I	GATC	5 cut(s)	288, 562, 627, 649, 826
Bsp1720I	GCTNAGC	1 cut(s)	792
BspACI	CCGC	2 cut(s)	365, 716
BspANI	GGCC	4 cut(s)	536, 712, 875, 908
BspCNI	CTCAG	2 cut(s)	508, 784
BspDI	ATCGAT	1 cut(s)	630
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	2 cut(s)	651, 702
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	3 cut(s)	644, 657, 821
BspQI	GCTCTTC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	837
BssMI	GATC	5 cut(s)	288, 562, 627, 649, 826
BssNI	GRCGYC	1 cut(s)	238
Bst2UI	CCWGG	2 cut(s)	114, 905
Bst4CI	ACNGT	2 cut(s)	121, 284
Bst6I	CTCTTC	5 cut(s)	141, 249, 270, 375, 711
BstACI	GRCGYC	1 cut(s)	238
BstDEI	CTNAG	3 cut(s)	219, 516, 792
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	5 cut(s)	291, 565, 630, 652, 829
BstMBI	GATC	5 cut(s)	288, 562, 627, 649, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 865
BstNI	CCWGG	2 cut(s)	114, 905
BstSCI	CCNGG	2 cut(s)	112, 903
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	868
BstV2I	GAAGAC	4 cut(s)	54, 158, 241, 255
BstX2I	RGATCY	1 cut(s)	649
BstXI	CCANNNNNNTGG	2 cut(s)	81, 883
BstYI	RGATCY	1 cut(s)	649
Bsu15I	ATCGAT	1 cut(s)	630
BsuRI	GGCC	4 cut(s)	536, 712, 875, 908
BsuTUI	ATCGAT	1 cut(s)	630
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	1 cut(s)	770
BveI	ACCTGC	1 cut(s)	550
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	2 cut(s)	701, 873
ClaI	ATCGAT	1 cut(s)	630
CseI	GACGC	1 cut(s)	740
Csp6I	GTAC	3 cut(s)	178, 280, 806
CviAII	CATG	6 cut(s)	136, 295, 547, 578, 625, 695
CviQI	GTAC	3 cut(s)	178, 280, 806
DdeI	CTNAG	3 cut(s)	219, 516, 792
DpnI	GATC	5 cut(s)	290, 564, 629, 651, 828
DpnII	GATC	5 cut(s)	288, 562, 627, 649, 826
DraI	TTTAAA	2 cut(s)	570, 918
EaeI	YGGCCR	2 cut(s)	710, 906
Eam1104I	CTCTTC	5 cut(s)	141, 249, 270, 375, 711
EarI	CTCTTC	5 cut(s)	141, 249, 270, 375, 711
Eco147I	AGGCCT	1 cut(s)	536
Eco47I	GGWCC	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	701
EcoRII	CCWGG	2 cut(s)	112, 903
EcoT22I	ATGCAT	2 cut(s)	579, 637
FaeI	CATG	6 cut(s)	139, 298, 550, 581, 628, 698
FaqI	GGGAC	1 cut(s)	714
FatI	CATG	6 cut(s)	135, 294, 546, 577, 624, 694
FauNDI	CATATG	2 cut(s)	106, 440
FblI	GTMKAC	1 cut(s)	747
Fnu4HI	GCNGC	2 cut(s)	366, 857
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	2 cut(s)	366, 857
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	2 cut(s)	366, 857
HaeIII	GGCC	4 cut(s)	536, 712, 875, 908
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	1 cut(s)	624
Hin1I	GRCGYC	1 cut(s)	238
Hin1II	CATG	6 cut(s)	139, 298, 550, 581, 628, 698
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	2 cut(s)	445, 833
HphI	GGTGA	2 cut(s)	413, 531
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	3 cut(s)	171, 330, 339
Hpy188III	TCNNGA	6 cut(s)	124, 242, 314, 488, 671, 830
Hpy8I	GTNNAC	1 cut(s)	748
Hpy99I	CGWCG	1 cut(s)	468
HpyAV	CCTTC	6 cut(s)	155, 298, 498, 590, 601, 668
HpyCH4III	ACNGT	2 cut(s)	121, 284
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	5 cut(s)	110, 577, 635, 770, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 865
HpyF3I	CTNAG	3 cut(s)	219, 516, 792
HpySE526I	ACGT	1 cut(s)	238
Hsp92I	GRCGYC	1 cut(s)	238
Hsp92II	CATG	6 cut(s)	139, 298, 550, 581, 628, 698
HspAI	GCGC	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	288, 562, 627, 649, 826
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	1 cut(s)	868
LweI	GCATC	2 cut(s)	622, 757
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	238
MalI	GATC	5 cut(s)	290, 564, 629, 651, 828
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	5 cut(s)	288, 562, 627, 649, 826
MflI	RGATCY	1 cut(s)	649
MlsI	TGGCCA	1 cut(s)	908
MluCI	AATT	4 cut(s)	341, 387, 810, 913
MluNI	TGGCCA	1 cut(s)	908
Mox20I	TGGCCA	1 cut(s)	908
Mph1103I	ATGCAT	2 cut(s)	579, 637
MroXI	GAANNNNTTC	2 cut(s)	165, 324
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	4 cut(s)	95, 569, 912, 917
Msp20I	TGGCCA	1 cut(s)	908
MspR9I	CCNGG	2 cut(s)	114, 905
MvaI	CCWGG	2 cut(s)	114, 905
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	2 cut(s)	542, 865
NdeI	CATATG	2 cut(s)	106, 440
NdeII	GATC	5 cut(s)	288, 562, 627, 649, 826
NlaIII	CATG	6 cut(s)	139, 298, 550, 581, 628, 698
NlaIV	GGNNCC	2 cut(s)	651, 702
NsiI	ATGCAT	2 cut(s)	579, 637
PaqCI	CACCTGC	1 cut(s)	550
PceI	AGGCCT	1 cut(s)	536
PciSI	GCTCTTC	1 cut(s)	141
PdmI	GAANNNNTTC	2 cut(s)	165, 324
PfeI	GAWTC	2 cut(s)	445, 833
PkrI	GCNGC	2 cut(s)	367, 858
PpuMI	RGGWCCY	1 cut(s)	701
PshBI	ATTAAT	1 cut(s)	912
Psp5II	RGGWCCY	1 cut(s)	701
Psp6I	CCWGG	2 cut(s)	112, 903
PspGI	CCWGG	2 cut(s)	112, 903
PspN4I	GGNNCC	2 cut(s)	651, 702
PspPI	GGNCC	2 cut(s)	701, 873
PspPPI	RGGWCCY	1 cut(s)	701
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	3 cut(s)	179, 281, 807
RsaNI	GTAC	3 cut(s)	178, 280, 806
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	4 cut(s)	95, 569, 912, 917
SatI	GCNGC	2 cut(s)	366, 857
Sau3AI	GATC	5 cut(s)	288, 562, 627, 649, 826
Sau96I	GGNCC	2 cut(s)	701, 873
ScaI	AGTACT	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	114, 905
SfaNI	GCATC	2 cut(s)	622, 757
SinI	GGWCC	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
Sse9I	AATT	4 cut(s)	341, 387, 810, 913
SseBI	AGGCCT	1 cut(s)	536
SsiI	CCGC	2 cut(s)	365, 716
SspMI	CTAG	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	2 cut(s)	112, 903
TaaI	ACNGT	2 cut(s)	121, 284
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	3 cut(s)	232, 463, 630
TasI	AATT	4 cut(s)	341, 387, 810, 913
TatI	WGTACW	2 cut(s)	177, 805
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	445, 833
Tru1I	TTAA	4 cut(s)	95, 569, 912, 917
Tru9I	TTAA	4 cut(s)	95, 569, 912, 917
TscAI	CASTG	1 cut(s)	777
TseI	GCWGC	1 cut(s)	856
TspDTI	ATGAA	4 cut(s)	152, 204, 218, 609
TspRI	CASTG	1 cut(s)	777
VpaK11BI	GGWCC	1 cut(s)	701
VspI	ATTAAT	1 cut(s)	912
XmiI	GTMKAC	1 cut(s)	747
XmnI	GAANNNNTTC	2 cut(s)	165, 324
XspI	CTAG	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	179
Zsp2I	ATGCAT	2 cut(s)	579, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.